Benjamin P. Berman

42.4k citations

75 papers · 5.3k indexed · h-index 37

Molecular Biology top 1%
Cancer Research top 2%
Genetics top 2%
Pulmonary and Respiratory Medicine top 5%
Immunology top 5%

Co-authors: Peter W. Laird Yaping Liu Gerald M. Rubin S Celniker Pavel Tomančák Peggy Farnham Lijing Yao Peter A. Jones
Topics: Epigenetics and DNA Methylation (23 papers)Genomics and Chromatin Dynamics (21 papers)Cancer-related gene regulation (12 papers)
Cited by: Cancer Research Molecular Biology Genetics
Journals: Proceedings of the National Academy of Sciences Nucleic Acids Research Circulation
Partner nations: United States Israel China

In The Last Decade

Benjamin P. Berman

72 papers receiving 5.3k citations

Peers

Countries citing papers authored by Benjamin P. Berman

Since Specialization

Citations

This map shows the geographic impact of Benjamin P. Berman's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Benjamin P. Berman with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Benjamin P. Berman more than expected).

Fields of papers citing papers by Benjamin P. Berman

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Benjamin P. Berman. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Benjamin P. Berman. The network helps show where Benjamin P. Berman may publish in the future.

Co-authorship network of co-authors of Benjamin P. Berman

This figure shows the co-authorship network connecting the top 25 collaborators of Benjamin P. Berman. A scholar is included among the top collaborators of Benjamin P. Berman based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Benjamin P. Berman. Benjamin P. Berman is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Understanding the complex chromatin dynamics in primary human neutrophils during PMA-induced NET formation 2024 ·Frontiers in Immunology ·(unknown),Benjamin P. Berman,Theresa K. Kelly,(unknown)	5
2	Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation 2023 ·Genome biology ·Yueyuan Zheng,(unknown),Allen S. Ho,Uttam K. Sinha,Li‐Yan Xu,En‐Min Li,H. Phillip Koeffler,Benjamin P. Berman,De‐Chen Lin	9
3	Muscle injury causes long-term changes in stem-cell DNA methylation 2022 ·Proceedings of the National Academy of Sciences ·(unknown),Ofra Sabag,(unknown),(unknown),(unknown),Yuval Nevo,Yuval Gielchinsky,Benjamin P. Berman,Howard Cedar,Yehudit Bergman	8
4	Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing 2022 ·Genome biology ·(unknown),Shari Orlanski,Filippo Martignano,Ilana Fox-Fisher,Ruth Shemer,Yuval Dor,Aviad Zick,Amir Eden,Iacopo Petrini,Silvestro G. Conticello,Benjamin P. Berman	69
5	A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes 2021 ·Nature Communications ·Yueyuan Zheng,Guowei Huang,Tiago C. Silva,Qian Yang,Yan‐Yi Jiang,H. Phillip Koeffler,De‐Chen Lin,Benjamin P. Berman	26
6	Publisher Correction: A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes 2021 ·Nature Communications ·Yueyuan Zheng,Guowei Huang,Tiago C. Silva,Qian Yang,Yan‐Yi Jiang,H. Phillip Koeffler,De‐Chen Lin,Benjamin P. Berman	2
7	Lineage-Specific Epigenomic and Genomic Activation of Oncogene HNF4A Promotes Gastrointestinal Adenocarcinomas 2020 ·Cancer Research ·Jian Pan,Tiago C. Silva,Nicole Gull,Qian Yang,Jasmine Plummer,Stephanie Chen,Kenji Daigo,Takao Hamakubo,Sigal Gery,Ling‐Wen Ding,Yan‐Yi Jiang,Shaoyan Hu,Li‐Yan Xu,En‐Min Li,Yanbing Ding,Samuel J. Klempner,Simon A. Gayther,Benjamin P. Berman,H. Phillip Koeffler,De‐Chen Lin	38
8	Non-coding somatic mutations converge on the PAX8 pathway in ovarian cancer 2020 ·Nature Communications ·Rosario I. Corona,Ji-Heui Seo,Xianzhi Lin,Dennis J. Hazelett,Jessica Reddy,Marcos A. Fonseca,(unknown),Yvonne G. Lin,Paulette Mhawech‐Fauceglia,Sohrab P. Shah,David G. Huntsman,Alexander Gusev,Beth Y. Karlan,Benjamin P. Berman,Matthew L. Freedman,Simon A. Gayther,Kate Lawrenson	45
9	Mapping Citrullinated Sites in Multiple Organs of Mice Using Hypercitrullinated Library 2019 ·Journal of Proteome Research ·Justyna Fert‐Bober,Vidya Venkatraman,Christie L. Hunter,Ruining Liu,Erin L. Crowgey,Rakhi Pandey,Ronald J. Holewinski,Aleksandr Stotland,Benjamin P. Berman,Jennifer E. Van Eyk	30
10	ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles 2018 ·Bioinformatics ·Tiago C. Silva,Simon G. Coetzee,Nicole Gull,Lijing Yao,Dennis J. Hazelett,Houtan Noushmehr,De‐Chen Lin,Benjamin P. Berman	62
11	Genomic and Epigenomic Heterogeneity of Hepatocellular Carcinoma 2017 ·Cancer Research ·De‐Chen Lin,Anand Mayakonda,Huy Q. Dinh,Pinbo Huang,Lehang Lin,Xiaoping Liu,Ling‐Wen Ding,Jie Wang,Benjamin P. Berman,Erwei Song,Dong Yin,H. Phillip Koeffler	148
12	Volumetry of low‐contrast liver lesions with CT: Investigation of estimation uncertainties in a phantom study 2016 ·Medical Physics ·Qin Li,(unknown),Qiao Huang,Min Zong,Benjamin P. Berman,Marios A. Gavrielides,Lawrence H. Schwartz,Binsheng Zhao,Nicholas Petrick	7
13	The role of DNA methylation in directing the functional organization of the cancer epigenome 2015 ·Genome Research ·Fides D. Lay,Yaping Liu,Theresa K. Kelly,Heather Witt,Peggy Farnham,Peter A. Jones,Benjamin P. Berman	75
14	Integrated Transcriptomic and Epigenomic Analysis of Primary Human Lung Epithelial Cell Differentiation 2013 ·PLoS Genetics ·Crystal N. Marconett,Beiyun Zhou,Megan E. Rieger,Suhaida A. Selamat,(unknown),Xiaohui Fang,(unknown),Theresa Ryan Stueve,Kimberly D. Siegmund,Benjamin P. Berman,Zea Borok,Ite A. Laird‐Offringa	37
15	Parameter estimation and uncertainty quantification for an epidemic model 2012 ·Mathematical Biosciences & Engineering ·(unknown),(unknown),Benjamin P. Berman,(unknown),Justin P. Wright,Alun L. Lloyd,(unknown),(unknown),(unknown)	51
16	Opposing Effects of Runx2 and Estradiol on Breast Cancer Cell Proliferation: In Vitro Identification of Reciprocally Regulated Gene Signature Related to Clinical Letrozole Responsiveness 2011 ·Clinical Cancer Research ·Nyam-Osor Chimge,Sanjeev K. Baniwal,Jingqin Luo,Simon G. Coetzee,Omar Khalid,Benjamin P. Berman,Debu Tripathy,Matthew J. Ellis,Baruch Frenkel	39
17	Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion 2011 ·Nucleic Acids Research ·Gillian H. Little,Houtan Noushmehr,Sanjeev K. Baniwal,Benjamin P. Berman,Gerhard A. Coetzee,Baruch Frenkel	37
18	Genomic Androgen Receptor-Occupied Regions with Different Functions, Defined by Histone Acetylation, Coregulators and Transcriptional Capacity 2008 ·PLoS ONE ·Jia Li,Benjamin P. Berman,(unknown),Xiting Yan,Jon Cogan,(unknown),(unknown),Grant Buchanan,Baruch Frenkel,Gerhard A. Coetzee	116
19	Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome 2002 ·Proceedings of the National Academy of Sciences ·Benjamin P. Berman,Yutaka Nibu,Barret D. Pfeiffer,Pavel Tomančák,S Celniker,Michael Levine,Gerald M. Rubin,Michael B. Eisen	483
20	Mitochondrial protonophoric activity induced by a thyromimetic fatty acid analogue 2000 ·Biochimica et Biophysica Acta (BBA) - Bioenergetics ·(unknown),Bella Kalderon,Benjamin P. Berman,Jacob Bar‐Tana	15

About Benjamin P. Berman

Benjamin P. Berman is a scholar working on Cancer Research, Molecular Biology and Genetics, having authored 75 papers that have together received 5.3k indexed citations. Recurring topics across this work include Epigenetics and DNA Methylation (23 papers), Genomics and Chromatin Dynamics (21 papers) and Cancer-related gene regulation (12 papers). The work is most often cited by research in Cancer Research (925 citations), Molecular Biology (4.0k citations) and Genetics (869 citations). Benjamin P. Berman has collaborated with scholars based in United States, Israel and China. Frequent co-authors include Peter W. Laird, Yaping Liu, Gerald M. Rubin, S Celniker, Pavel Tomančák, Peggy Farnham, Lijing Yao, Peter A. Jones, Michael B. Eisen and Barret D. Pfeiffer. Their work appears in journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Circulation.

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