Denis Thieffry

13.4k total citations · 1 hit paper
141 papers, 7.6k citations indexed

About

Denis Thieffry is a scholar working on Molecular Biology, Genetics and Immunology. According to data from OpenAlex, Denis Thieffry has authored 141 papers receiving a total of 7.6k indexed citations (citations by other indexed papers that have themselves been cited), including 110 papers in Molecular Biology, 19 papers in Genetics and 14 papers in Immunology. Recurrent topics in Denis Thieffry's work include Gene Regulatory Network Analysis (50 papers), Bioinformatics and Genomic Networks (36 papers) and Genomics and Chromatin Dynamics (25 papers). Denis Thieffry is often cited by papers focused on Gene Regulatory Network Analysis (50 papers), Bioinformatics and Genomic Networks (36 papers) and Genomics and Chromatin Dynamics (25 papers). Denis Thieffry collaborates with scholars based in France, Mexico and Belgium. Denis Thieffry's co-authors include Claudine Chaouiya, Aurélien Naldi, René Thomas, Élisabeth Rémy, Lucas Sánchez, Adrien Fauré, Jacques van Helden, Morgane Thomas‐Chollier, Julio Collado‐Vides and Marcelle Kaufman and has published in prestigious journals such as Nature, Cell and Proceedings of the National Academy of Sciences.

In The Last Decade

Denis Thieffry

132 papers receiving 7.4k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Modularity in development and evolution

2000 562 citations Denis Thieffry et al. profile →

Peers

Countries citing papers authored by Denis Thieffry

Since Specialization

Citations

This map shows the geographic impact of Denis Thieffry's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Denis Thieffry with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Denis Thieffry more than expected).

Fields of papers citing papers by Denis Thieffry

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Denis Thieffry. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Denis Thieffry. The network helps show where Denis Thieffry may publish in the future.

Co-authorship network of co-authors of Denis Thieffry

This figure shows the co-authorship network connecting the top 25 collaborators of Denis Thieffry. A scholar is included among the top collaborators of Denis Thieffry based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Denis Thieffry. Denis Thieffry is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Reproducible Boolean model analyses and simulations with the CoLoMoTo software suite: a tutorial 2025 ·Interface Focus ·Vincent Noël, Aurélien Naldi, Laurence Calzone, Loïc Paulevé, Denis Thieffry	0
2	Glial-to-mesenchymal transition of tumor Schwann cells drives the genetic burden in MPNSTs from neurofibromatosis type 1 mouse model 2025 ·Science Advances ·Katarzyna J. Radomska, (unknown), Laure Lecerf, Bastien Job, (unknown), (unknown), (unknown), Denis Thieffry, Patrick Charnay, P. Wolkenstein, Nicolás Ortonne, (unknown), Piotr Topilko	0
3	RSAT 2022: regulatory sequence analysis tools 2022 ·Nucleic Acids Research ·Walter Santana-Garcia, Jaime A. Castro-Mondragón, (unknown), Nga Thi Thuy Nguyen, (unknown), (unknown), (unknown), Denis Thieffry, Pierre Vincens, Bruno Contreras‐Moreira, Jacques van Helden, Morgane Thomas‐Chollier, Alejandra Medina-Rivera	45
4	Cis -acting variation is common across regulatory layers but is often buffered during embryonic development 2020 ·Genome Research ·Swann Floc’hlay, Emily Wong, Bingqing Zhao, Rebecca R. Viales, Morgane Thomas‐Chollier, Denis Thieffry, David Garfield, Eileen E. M. Furlong	19
5	Deciphering and modelling the TGF-β signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo 2020 ·Development ·Swann Floc’hlay, Maria Dolores Molina, Céline Hernandez, Emmanuel Haillot, Morgane Thomas‐Chollier, Thierry Lepage, Denis Thieffry	9
6	Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop 2020 ·Briefings in Bioinformatics ·Anna Niarakis, Martin Kuiper, Marek Ostaszewski, Rahuman S. Malik‐Sheriff, Cristina Casals‐Casas, Denis Thieffry, Tom C. Freeman, Paul D. Thomas, Vasundra Touré, Vincent Noël, Gautier Stoll, Julio Sáez-Rodríguez, Aurélien Naldi, (unknown), Ioannis Xénarios, Sylvain Soliman, Claudine Chaouiya, Tomáš Helikar, Laurence Calzone	13
7	RSAT 2018: regulatory sequence analysis tools 20th anniversary 2018 ·Nucleic Acids Research ·Nga Thi Thuy Nguyen, Bruno Contreras‐Moreira, Jaime A. Castro-Mondragón, Walter Santana-Garcia, Raúl Ossio, Carla Daniela Robles‐Espinoza, Mathieu Bahin, Samuel Collombet, Pierre Vincens, Denis Thieffry, Jacques van Helden, Alejandra Medina-Rivera, Morgane Thomas‐Chollier	122
8	Logical modeling of lymphoid and myeloid cell specification and transdifferentiation 2017 ·Proceedings of the National Academy of Sciences ·Samuel Collombet, Chris van Oevelen, José Luis Sardina, Wassim Abou-Jaoudé, Bruno Di Stefano, Morgane Thomas‐Chollier, Thomas Graf, Denis Thieffry	79
9	RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections 2017 ·Nucleic Acids Research ·Jaime A. Castro-Mondragón, Sébastien Jaeger, Denis Thieffry, Morgane Thomas‐Chollier, Jacques van Helden	70
10	Logical modelling of Drosophila signalling pathways 2013 ·Molecular BioSystems ·(unknown), Guillaume Junion, Christine Brun, Eileen E. M. Furlong, Denis Thieffry	20
11	Proteomic Analysis of the SH2Domain-containing Leukocyte Protein of 76 kDa (SLP76) Interactome 2013 ·Molecular & Cellular Proteomics ·(unknown), Anne-Marie Hesse, Bruno Iannascoli, Luca Grieco, Yohann Couté, Anna Niarakis, Romain Roncagalli, (unknown), Kong‐Peng Lam, Caroline Demangel, Denis Thieffry, Jérôme Garin, Bernard Malissen, Marc Daëron	10
12	Dynamical modeling and analysis of large cellular regulatory networks.: D. Bérenguier, C. Chaouiya, P. T. Monteiro, A. Naldi, E. Remy, D. Thieffry and L. Tichit 2013 ·Chaos An Interdisciplinary Journal of Nonlinear Science ·Duncan Bérenguier, Claudine Chaouiya, Pedro T. Monteiro, Aurélien Naldi, Élisabeth Rémy, Denis Thieffry, Laurent Tichit	2
13	Integrative Modelling of the Influence of MAPK Network on Cancer Cell Fate Decision 2013 ·PLoS Computational Biology ·Luca Grieco, Laurence Calzone, Isabelle Bernard‐Pierrot, François Radvanyi, Brigitte Kahn‐Perlès, Denis Thieffry	109
14	Bacterial Molecular Networks: Methods and Protocols, 804 2012 ·Dépôt institutionnel de l'Université libre de Bruxelles (Université Libre de Bruxelles) ·Jacques van Helden, Ariane Toussaint, Denis Thieffry	18
15	Dynamically consistent reduction of logical regulatory graphs 2010 ·Theoretical Computer Science ·Aurélien Naldi, Élisabeth Rémy, Denis Thieffry, Claudine Chaouiya	89
16	Modular logical modelling of the budding yeast cell cycle 2009 ·Molecular BioSystems ·Adrien Fauré, Aurélien Naldi, Fabrice Lopez, Claudine Chaouiya, Andrea Ciliberto, Denis Thieffry	43
17	Logical modelling of cell cycle control in eukaryotes: a comparative study 2009 ·Molecular BioSystems ·Adrien Fauré, Denis Thieffry	43
18	Functional organisation of Escherichia coli transcriptional regulatory network 2008 ·Journal of Molecular Biology ·Agustino Martínez‐Antonio, Sarath Chandra Janga, Denis Thieffry	110
19	Multiple aspects of DNA and RNA : from biophysics to bioinformatics : École d'été de physique des Houches, session LXXXII, 2-27 August 2004, Euro Summer School, NATO Advanced Study Institute, École thématique du CNRS 2005 ·Elsevier eBooks ·École d'été de physique théorique, (unknown), D. Chatenay, Simona Cocco, Rémi Monasson, Denis Thieffry, Jean Dalibard	1
20	Jacobian loops dynamics 2002 ·Revista Mexicana de Física ·(unknown), (unknown), Denis Thieffry	0

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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