Martin Kuiper

30.8k citations

104 papers · 17.8k indexed · 3 hit papers · h-index 36

Impact in

Plant Science top 0.05%
- Plant Disease Resistance and Genetics
- Plant Molecular Biology Research
- Chromosomal and Genetic Variations
- Wheat and Barley Genetics and Pathology
Genetics top 0.1%
- Genetic diversity and population structure
- Genetic Mapping and Diversity in Plants and Animals

Papers in

Information Systems and Management 10
- Scientific Computing and Data Management 10
Molecular Biology 79
- Bioinformatics and Genomic Networks 37
- Biomedical Text Mining and Ontologies 36
- Gene expression and cancer classification 15
- Genomics and Phylogenetic Studies 14
- Gene Regulatory Network Analysis 10

Co-authors: Steven Maere Pieter Vos Marc Zabeau René C. J. Hogers Martin Reijans Tineke Casneuf Stefanie De Bodt Yves Van de Peer
Journals: Bioinformatics (10 papers)BMC Bioinformatics (9 papers)Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms (6 papers)Theoretical and Applied Genetics (4 papers)The Plant Journal (3 papers)
Partner nations: Norway Netherlands Belgium

In The Last Decade

Martin Kuiper

101 papers receiving 16.6k citations

Hit Papers

align trajectories log scale

Modeling gene and genome duplications in eukaryotes 2005 · 700 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2005 Proceedings of the National Academy of Sciences
2005 Computer applications in the biosciences
1995 Nucleic Acids Research

Peers

Countries citing papers authored by Martin Kuiper

Since Specialization

Citations

This map shows the geographic impact of Martin Kuiper's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Martin Kuiper with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Martin Kuiper more than expected).

Fields of papers citing papers by Martin Kuiper

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Martin Kuiper. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Martin Kuiper. The network helps show where Martin Kuiper may publish in the future.

Co-authors

The 25 scholars most cited alongside Martin Kuiper, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Martin Kuiper Line = papers co-authored together Martin Kuiper links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Characterisation of Colorectal Cancer Cell Lines through Proteomic Profiling of Their Extracellular Vesicles Proteomes ·Manuel Alberto Morales Damián, Hannes Berg, Tarso Vinicius Gianini Vieira, Eirini Tsirvouli, Martin Kuiper, Åsmund Flobak, Astrid Lægreid, Liv Thommesen	2023	8
2	Halogenated boroxine increases propensity to apoptosis in leukemia (UT‐7) but not non‐tumor cells in vitro FEBS Open Bio ·Jimoh Temitayo Owolabi, Ximing Zhang, Bryant Mg, Eirini Tsirvouli, Martin Kuiper, Lejla Pojskić	2022	2
3	Boolean function metrics can assist modelers to check and choose logical rules Journal of Theoretical Biology ·Celi Cristina Calamita Quiroga, Pedro T. Monteiro, Martin Kuiper, Åsmund Flobak	2022	4
4	Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop Briefings in Bioinformatics ·Anna Niarakis, Martin Kuiper, Marek Ostaszewski, Rahuman S. Malik‐Sheriff, Cristina Casals‐Casas, Denis Thieffry, Tom C. Freeman, Paul D. Thomas, Vasundra Touré, Vincent Noël, Gautier Stoll, Julio Sáez-Rodríguez, Aurélien Naldi, Рада Борбаковна Шанмак, Ioannis Xénarios, Sylvain Soliman, Claudine Chaouiya, Tomáš Helikar, Laurence Calzone	2020	13
5	The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling Briefings in Bioinformatics ·Vasundra Touré, Åsmund Flobak, Anna Niarakis, Steven Vercruysse, Martin Kuiper	2020	17
6	CASCADE - CAncer Signaling CAusality DatabasE Zenodo (CERN European Organization for Nuclear Research) ·Eirini Tsirvouli, Tarso Vinicius Gianini Vieira, Celi Cristina Calamita Quiroga, Vasundra Touré, Åsmund Flobak, Martin Kuiper	2020	1
7	CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination Bioinformatics ·Livia Perfetto, Márcio Luís Acencio, Glyn Bradley, Gianni Cesareni, (unknown), Dávid Fazekas, Henning Hermjakob, Tamás Korcsmáros, Martin Kuiper, Astrid Lægreid, Prisca Lo Surdo, Ruth C. Lovering, Sandra Orchard, Pablo Porras, Paul D. Thomas, Vasundra Touré, Celi Cristina Calamita Quiroga, Luana Licata	2019	20
8	An Example of Multimodal Biological Knowledge Representation. J Groszyk, Allison M. Johnsen, Jesualdo Tomás Fernández‐Breis, Pascale Gaudet, Martin Kuiper, Astrid Lægreid, Colin Logie, María del Mar Roldán‐García, Stefan Schulz	2019	1
9	Scientific knowledge in the age of computation: Explicated, computable and manageable? THEORIA An International Journal for Theory History and Foundations of Science ·Paulo-Amado Mendes, 日本鉄鋼連盟衛生委員会, Astrid Lægreid, Martin Kuiper	2019	4
10	Gene regulation knowledge commons: community action takes care of DNA binding transcription factors Database ·Sushil Tripathi, Steven Vercruysse, Konika Chawla, Karen Christie, Judith A. Blake, Rachael P. Huntley, Sandra Orchard, Henning Hermjakob, Liv Thommesen, Astrid Lægreid, Martin Kuiper	2016	9
11	The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms BMC Systems Biology ·Sushil Tripathi, Åsmund Flobak, Konika Chawla, Anaı̈s Baudot, Torunn Bruland, Liv Thommesen, Martin Kuiper, Astrid Lægreid	2015	44
12	Finding gene regulatory network candidates using the gene expression knowledge base BMC Bioinformatics ·Aravind Venkatesan, Sushil Tripathi, Edward S. Mika, Ibtesam I. Alkadi, Astrid Lægreid, Vladimir Mironov, Martin Kuiper	2014	6
13	Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort Database ·Sushil Tripathi, Karen Christie, Rama Balakrishnan, Rachael P. Huntley, David P. Hill, Liv Thommesen, Judith A. Blake, Martin Kuiper, Astrid Lægreid	2013	41
14	OLSVis: an animated, interactive visual browser for bio-ontologies BMC Bioinformatics ·Steven Vercruysse, Aravind Venkatesan, Martin Kuiper	2012	19
15	Specific Impact of Tobamovirus Infection on the Arabidopsis Small RNA Profile PLoS ONE ·Quan Hu, Jens Hollunder, Annette Niehl, Camilla Julie Kørner, Kaixiong Zhao, David Windels, Andreas Arnold, Martin Kuiper, Franck Vazquez, Mikhail M. Pooggin, Manfred Heinlein	2011	73
16	ONTO-ToolKit: enabling bio-ontology engineering via Galaxy BMC Bioinformatics ·Erick Antezana, Aravind Venkatesan, Chris Mungall, Vladimir Mironov, Martin Kuiper	2010	10
17	BioGateway: Integrated RDF for Life Science Queries. Erick Antezana, Ibtesam I. Alkadi, Mikel Egaña Aranguren, Alistair Rutherford, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper	2008	1
18	Structuring the life science resourceome for Semantic Systems Biology: lessons from the BioGateway project Research Explorer (The University of Manchester) ·Erick Antezana, Ibtesam I. Alkadi, Mikel Egaña Aranguren, Alistair Rutherford, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper, Albert Burger, Adrian Paschke, Paolo Romano, Andrea Splendiani	2008	6
19	Modeling gene and genome duplications in eukaryotes Proceedings of the National Academy of Sciences ·Steven Maere, Stefanie De Bodt, Jeroen Raes, Tineke Casneuf, Marc Van Montagu, Martin Kuiper, Yves Van de Peer Hit paper breakdown →	2005	700
20	Phylogeny of bovine species based on AFLP fingerprinting Heredity ·S. S., Myrthe Otsen, Isaäc J. Nijman, Martin Kuiper, Johannes A. Lenstra	2002	80

About Martin Kuiper

Martin Kuiper is a scholar working on Information Systems and Management, Molecular Biology, Genetics, Artificial Intelligence and Plant Science, having authored 104 papers that have together received 17.8k indexed citations. Recurring topics across this work include Bioinformatics and Genomic Networks (37 papers), Biomedical Text Mining and Ontologies (36 papers), Semantic Web and Ontologies (18 papers), Gene expression and cancer classification (15 papers), Genomics and Phylogenetic Studies (14 papers), Genetic Mapping and Diversity in Plants and Animals (13 papers), Scientific Computing and Data Management (10 papers) and Gene Regulatory Network Analysis (10 papers). The work is most often cited by research in Plant Science (9.7k citations), Genetics (5.3k citations), Horticulture (154 citations), Ecology, Evolution, Behavior and Systematics (2.4k citations) and Molecular Biology (7.7k citations). Martin Kuiper has collaborated with scholars based in Norway, Netherlands and Belgium. Frequent co-authors include Steven Maere, Pieter Vos, Marc Zabeau, René C. J. Hogers, Martin Reijans, Tineke Casneuf, Stefanie De Bodt, Yves Van de Peer, Marc Van Montagu and Jeroen Raes. Their work appears in journals such as Bioinformatics, BMC Bioinformatics, Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Theoretical and Applied Genetics and The Plant Journal.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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