Ioannis Xénarios

37.2k total citations · 7 hit papers
171 papers, 14.3k citations indexed

About

Ioannis Xénarios is a scholar working on Molecular Biology, Genetics and Immunology. According to data from OpenAlex, Ioannis Xénarios has authored 171 papers receiving a total of 14.3k indexed citations (citations by other indexed papers that have themselves been cited), including 137 papers in Molecular Biology, 29 papers in Genetics and 18 papers in Immunology. Recurrent topics in Ioannis Xénarios's work include Genomics and Phylogenetic Studies (31 papers), Bioinformatics and Genomic Networks (28 papers) and Microbial Metabolic Engineering and Bioproduction (22 papers). Ioannis Xénarios is often cited by papers focused on Genomics and Phylogenetic Studies (31 papers), Bioinformatics and Genomic Networks (28 papers) and Microbial Metabolic Engineering and Bioproduction (22 papers). Ioannis Xénarios collaborates with scholars based in Switzerland, United States and United Kingdom. Ioannis Xénarios's co-authors include David Eisenberg, Lydie Bougueleret, Alan Bridge, Edward M. Marcotte, Edouard de Castro, Luis Mendoza, Beatrice Cuche, Lorenzo Cerutti, Christian J A Sigrist and Nicolas Hulo and has published in prestigious journals such as Nature, Cell and Proceedings of the National Academy of Sciences.

In The Last Decade

Ioannis Xénarios

165 papers receiving 14.0k citations

Hit Papers

DIP, the Database of Inte... 2000 2026 2008 2017 2002 2012 2011 2000 2015 400 800 1.2k
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

  1. DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions
    2002 1.3k citations Ioannis Xénarios Nucleic Acids Research profile →
  2. New and continuing developments at PROSITE
    2012 1.1k citations Alan Bridge, Lydie Bougueleret et al. Nucleic Acids Research profile →
  3. T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
    2011 869 citations Ioannis Xénarios et al. Nucleic Acids Research profile →
  4. DIP: the Database of Interacting Proteins
    2000 813 citations Ioannis Xénarios Nucleic Acids Research profile →
  5. UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View
    2015 581 citations Emmanuel Boutet, Damien Lieberherr et al. Methods in molecular biology profile →
  6. Protein function in the post-genomic era
    2000 536 citations David Eisenberg, Edward M. Marcotte et al. profile →
  7. Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling
    2012 489 citations Markus V. Kohnen, Martine Trévisan et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Ioannis Xénarios Switzerland 52 10.3k 2.0k 1.2k 1.2k 1.1k 171 14.3k
Marc A. Martı́-Renom Spain 45 11.5k 1.1× 1.6k 0.8× 980 0.8× 1.7k 1.4× 897 0.8× 123 15.4k
Nicolas Guex Switzerland 33 9.5k 0.9× 1.6k 0.8× 730 0.6× 1.5k 1.2× 1.3k 1.1× 76 14.6k
Gabriel Studer Switzerland 17 9.5k 0.9× 2.0k 1.0× 977 0.8× 1.4k 1.1× 1.1k 1.0× 22 15.2k
Henning Hermjakob United Kingdom 54 12.8k 1.2× 945 0.5× 754 0.6× 1.2k 1.0× 1.1k 1.0× 213 17.4k
Andrea Franceschini Switzerland 8 9.8k 1.0× 1.1k 0.5× 1.1k 0.9× 1.4k 1.1× 1.4k 1.2× 11 14.7k
Thomas Dandekar Germany 61 8.6k 0.8× 1.8k 0.9× 523 0.4× 1.3k 1.1× 703 0.6× 369 14.8k
Tobias Doerks Germany 35 10.5k 1.0× 2.3k 1.1× 545 0.4× 1.6k 1.3× 1.1k 1.0× 48 14.2k
Edward M. Marcotte United States 71 18.8k 1.8× 1.7k 0.9× 1.1k 0.9× 3.2k 2.6× 1.1k 0.9× 236 23.6k
Silvio C. E. Tosatto Italy 48 10.9k 1.1× 2.7k 1.4× 626 0.5× 1.3k 1.1× 659 0.6× 182 14.8k
Steven E. Brenner United States 49 19.2k 1.9× 2.6k 1.3× 748 0.6× 2.7k 2.2× 1.3k 1.1× 141 23.7k

Countries citing papers authored by Ioannis Xénarios

Since Specialization
Citations

This map shows the geographic impact of Ioannis Xénarios's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ioannis Xénarios with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ioannis Xénarios more than expected).

Fields of papers citing papers by Ioannis Xénarios

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ioannis Xénarios. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ioannis Xénarios. The network helps show where Ioannis Xénarios may publish in the future.

Co-authorship network of co-authors of Ioannis Xénarios

This figure shows the co-authorship network connecting the top 25 collaborators of Ioannis Xénarios. A scholar is included among the top collaborators of Ioannis Xénarios based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Ioannis Xénarios. Ioannis Xénarios is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
2.
Hofmeister, Robin J., et al.. (2024). Improving population scale statistical phasing with whole-genome sequencing data. PLoS Genetics. 20(7). e1011092–e1011092.
3.
Santuari, Luca, et al.. (2024). AI-accelerated therapeutic antibody development: practical insights. SHILAP Revista de lepidopterología. 4. 2 indexed citations
4.
Xénarios, Ioannis, et al.. (2023). Exploiting parallelization in positional Burrows–Wheeler transform (PBWT) algorithms for efficient haplotype matching and compression. Bioinformatics Advances. 3(1). vbad021–vbad021. 1 indexed citations
5.
Taylor, Alysha, Nastassia Gobet, Branduff McAllister, et al.. (2022). Repeat Detector: versatile sizing of expanded tandem repeats and identification of interrupted alleles from targeted DNA sequencing. NAR Genomics and Bioinformatics. 4(4). lqac089–lqac089. 7 indexed citations
6.
Guex, Nicolas, et al.. (2020). PamgeneAnalyzeR: open and reproducible pipeline for kinase profiling. Bioinformatics. 36(20). 5117–5119. 4 indexed citations
7.
Niarakis, Anna, Martin Kuiper, Marek Ostaszewski, et al.. (2020). Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop. Briefings in Bioinformatics. 22(2). 1848–1859. 13 indexed citations
8.
Hor, Charlotte N., Jake Yeung, Maxime Jan, et al.. (2019). Sleep–wake-driven and circadian contributions to daily rhythms in gene expression and chromatin accessibility in the murine cortex. Proceedings of the National Academy of Sciences. 116(51). 25773–25783. 58 indexed citations
9.
Dellicour, Simon, Philippe Lemey, Jean Artois, et al.. (2019). Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference — Application to H5N1 spread in the Mekong region. Bioinformatics. 36(7). 2098–2104. 16 indexed citations
10.
Beer, Ilan, Christian Iseli, Chloé Chong, et al.. (2018). Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome*. Molecular & Cellular Proteomics. 17(12). 2347–2357. 74 indexed citations
11.
Fiorucci, Anne-Sophie, et al.. (2017). Local auxin production underlies a spatially restricted neighbor-detection response in Arabidopsis. Proceedings of the National Academy of Sciences. 114(28). 7444–7449. 74 indexed citations
12.
Crespo, Isaac, Lou Götz, Robin Liechti, et al.. (2016). Identifying biological mechanisms for favorable cancer prognosis using non-hypothesis-driven iterative survival analysis. npj Systems Biology and Applications. 2(1). 16037–16037. 5 indexed citations
13.
Kohnen, Markus V., Emanuel Schmid‐Siegert, Martine Trévisan, et al.. (2016). Neighbor Detection Induces Organ-Specific Transcriptomes, Revealing Patterns Underlying Hypocotyl-Specific Growth. The Plant Cell. 28(12). 2889–2904. 133 indexed citations
14.
Boutet, Emmanuel, Damien Lieberherr, Michael Tognolli, et al.. (2015). UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View. Methods in molecular biology. 1374. 23–54. 581 indexed citations breakdown →
15.
Ibberson, Mark, Nicolas Guex, Assia Ifticene‐Treboux, et al.. (2013). TIE-2 and VEGFR Kinase Activities Drive Immunosuppressive Function of TIE-2–Expressing Monocytes in Human Breast Tumors. Clinical Cancer Research. 19(13). 3439–3449. 32 indexed citations
16.
Zhang, Xuezhi, Karl‐Heinz Krause, Ioannis Xénarios, Thierry Soldati, & Brigitte Boeckmann. (2013). Evolution of the Ferric Reductase Domain (FRD) Superfamily: Modularity, Functional Diversification, and Signature Motifs. PLoS ONE. 8(3). e58126–e58126. 72 indexed citations
17.
Ortiz, M., Nicolas Guex, Étienne Patin, et al.. (2009). Evolutionary Trajectories of Primate Genes Involved in HIV Pathogenesis. Molecular Biology and Evolution. 26(12). 2865–2875. 43 indexed citations
18.
Xénarios, Ioannis. (2002). DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Research. 30(1). 303–305. 1269 indexed citations breakdown →
19.
Landgraf, Ralf, Ioannis Xénarios, & David Eisenberg. (2001). Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins11Edited by J. Thornton. Journal of Molecular Biology. 307(5). 1487–1502. 199 indexed citations
20.
Marcotte, Edward M., Ioannis Xénarios, Alexander M. van der Bliek, & David Eisenberg. (2000). Localizing proteins in the cell from their phylogenetic profiles. Proceedings of the National Academy of Sciences. 97(22). 12115–12120. 174 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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