Bing Ren

115.9k total citations · 27 hit papers
216 papers, 45.0k citations indexed

About

Bing Ren is a scholar working on Molecular Biology, Genetics and Plant Science. According to data from OpenAlex, Bing Ren has authored 216 papers receiving a total of 45.0k indexed citations (citations by other indexed papers that have themselves been cited), including 183 papers in Molecular Biology, 29 papers in Genetics and 28 papers in Plant Science. Recurrent topics in Bing Ren's work include Genomics and Chromatin Dynamics (116 papers), Epigenetics and DNA Methylation (62 papers) and RNA Research and Splicing (45 papers). Bing Ren is often cited by papers focused on Genomics and Chromatin Dynamics (116 papers), Epigenetics and DNA Methylation (62 papers) and RNA Research and Splicing (45 papers). Bing Ren collaborates with scholars based in United States, China and Belgium. Bing Ren's co-authors include Jesse R. Dixon, Gary C. Hon, Siddarth Selvaraj, Feng Yue, Ming Hu, Audrey Kim, Yin Shen, Zhen Ye, R. David Hawkins and Jun S. Liu and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

Bing Ren

212 papers receiving 44.6k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Topological domains in mammalian genomes identified by analysis of chromatin interactions

2012 4.5k citations Ming Hu, Bing Ren et al. Nature profile →
Human DNA methylomes at base resolution show widespread epigenomic differences

2009 3.4k citations Bing Ren, Joseph R. Ecker et al. Nature profile →
N6-methyladenosine-dependent regulation of messenger RNA stability

2013 3.3k citations Bing Ren, Chuan He et al. Nature profile →
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

2007 2.5k citations Bing Ren et al. Nature Genetics profile →
Genome-Wide Location and Function of DNA Binding Proteins

2000 1.4k citations Bing Ren et al. Science profile →
Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification

2011 1.4k citations Bing Ren et al. profile →
The NIH Roadmap Epigenomics Mapping Consortium

2010 1.2k citations Bing Ren, Manolis Kellis et al. Nature Biotechnology profile →
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

2011 1.1k citations Bing Ren, Joseph R. Ecker et al. Nature profile →
Remodeling of Yeast Genome Expression in Response to Environmental Changes

2001 1.1k citations Bing Ren et al. profile →
Chromatin architecture reorganization during stem cell differentiation

2015 1.1k citations Ah Young Lee, Joseph R. Ecker et al. Nature profile →
A map of the cis-regulatory sequences in the mouse genome

2012 1.0k citations Bing Ren et al. Nature profile →
A high-resolution map of the three-dimensional chromatin interactome in human cells

2013 828 citations Ah Young Lee, Bing Ren et al. Nature profile →
Analysis of the Vertebrate Insulator Protein CTCF-Binding Sites in the Human Genome

2007 811 citations Bing Ren et al. profile →
Base-Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome

2012 798 citations Miao Yu, Bing Ren et al. profile →
A high-resolution map of active promoters in the human genome

2005 726 citations Bing Ren et al. Nature profile →
CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

2015 648 citations Bing Ren et al. profile →
Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

2013 566 citations Bing Ren et al. Proceedings of the National Academy of Sciences profile →
Chromatin Domains: The Unit of Chromosome Organization

2016 504 citations Bing Ren et al. profile →
A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome

2016 489 citations Ming Hu, Zheng Xu et al. profile →
Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition

2016 450 citations Guoqiang Li, Ah Young Lee et al. Nature profile →
The 4D nucleome project

2017 439 citations Bing Ren et al. Nature profile →
Human body epigenome maps reveal noncanonical DNA methylation variation

2015 424 citations Eran A. Mukamel, Bing Ren et al. Nature profile →
Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis

2013 334 citations Bing Ren, Joseph R. Ecker et al. profile →
Comprehensive analysis of single cell ATAC-seq data with SnapATAC

2021 225 citations Rongxin Fang, Sebastian Preißl et al. Nature Communications profile →
A single-cell atlas of chromatin accessibility in the human genome

2021 200 citations Kai Zhang, Xiaomeng Hou et al. profile →
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation

2021 184 citations Naoki Kubo, Haruhiko Ishii et al. profile →
Spatially organized cellular communities form the developing human heart

2024 64 citations Elie N. Farah, Colin Kern et al. Nature profile →

Peers

Countries citing papers authored by Bing Ren

Since Specialization

Citations

This map shows the geographic impact of Bing Ren's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Bing Ren with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Bing Ren more than expected).

Fields of papers citing papers by Bing Ren

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Bing Ren. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Bing Ren. The network helps show where Bing Ren may publish in the future.

Co-authorship network of co-authors of Bing Ren

This figure shows the co-authorship network connecting the top 25 collaborators of Bing Ren. A scholar is included among the top collaborators of Bing Ren based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Bing Ren. Bing Ren is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	A Whole-Genome Survey and the Mitochondrial Genome of Acanthocepola indica Provide Insights into Its Phylogenetic Relationships in Priacanthiformes 2024 ·Animals ·Weihua Mao, Ziyi Xu, Qi Liu, Na Li, (unknown), Bing Ren, Tianxiang Gao, Chuan Liu	1
2	Enhanced braille recognition based on piezoresistive and piezoelectric dual-mode tactile sensors 2024 ·Sensors and Actuators A Physical ·(unknown), (unknown), Bing Ren, Jing Han, Jie Li	15
3	SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data 2023 ·Nature Communications ·Lindsay Lee, Hongyu Yu, (unknown), (unknown), Chenxu Zhu, Jiawen Chen, Liangqi Xie, Antonina Hafner, Shreya Mishra, (unknown), Caterina Strambio‐De‐Castillia, Alistair N. Boettiger, Bing Ren, Yun Li, Ming Hu	5
4	SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data 2023 ·Briefings in Bioinformatics ·Lindsay Lee, Miao Yu, Xiaoqi Li, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu, (unknown), Shreya Mishra, Bing Ren, Yun Li, Ming Hu	4
5	Human-gained heart enhancers are associated with species-specific cardiac attributes 2022 ·Nature Cardiovascular Research ·Eugin Destici, Fugui Zhu, (unknown), Sebastian Preißl, Elie N. Farah, Yanxiao Zhang, (unknown), Olivier Poirion, Ah Young Lee, Jonathan D. Grinstein, Joshua Bloomekatz, Hong Sook Kim, (unknown), Sylvia Μ. Evans, Bing Ren, Christopher Benner, C. Neil	6
6	SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data 2021 ·Nature Methods ·Miao Yu, Armen Abnousi, Yanxiao Zhang, Guoqiang Li, Lindsay Lee, (unknown), Rongxin Fang, (unknown), Yuchen Yang, Jia Wen, Quan Sun, Yun Li, Bing Ren, Ming Hu	49
7	CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains 2021 ·Nature Genetics ·Hui Huang, Quan Zhu, (unknown), Yuanyuan Han, Bogdan Bintu, Colin Kern, Mattia Conte, Yanxiao Zhang, Simona Bianco, Andrea M. Chiariello, Miao Yu, Rong Hu, Melodi Tastemel, Ivan Jurić, Ming Hu, Mario Nicodemi, Xiaowei Zhuang, Bing Ren	104
8	Comprehensive analysis of single cell ATAC-seq data with SnapATAC breakdown → 2021 ·Nature Communications ·Rongxin Fang, Sebastian Preißl, Yang Li, Xiaomeng Hou, Jacinta Lucero, Xinxin Wang, Amir Motamedi, Andrew K. Shiau, Xinzhu Zhou, Fangming Xie, Eran A. Mukamel, Kai Zhang, Yanxiao Zhang, M. Margarita Behrens, Joseph R. Ecker, Bing Ren	225
9	Joint profiling of histone modifications and transcriptome in single cells from mouse brain 2021 ·Nature Methods ·Chenxu Zhu, Yanxiao Zhang, Yang Eric Li, Jacinta Lucero, M. Margarita Behrens, Bing Ren	181
10	Systematic analysis of binding of transcription factors to noncoding variants 2021 ·Nature ·Jian Yan, Yunjiang Qiu, (unknown), Yimeng Yin, Yang Eric Li, (unknown), Naoki Nariai, Paola Benaglio, Anugraha Raman, Xiaoyu Li, Shicai Fan, Joshua Chiou, Fulin Chen, Kelly A. Frazer, Kyle J. Gaulton, Maike Sander, Jussi Taipale, Bing Ren	88
11	The changing mouse embryo transcriptome at whole tissue and single-cell resolution 2020 ·Nature ·Peng He, Brian A. Williams, Diane Trout, Georgi K. Marinov, Henry Amrhein, Libera Berghella, (unknown), Ingrid Plajzer-Frick, Veena Afzal, L Pennacchio, Diane E. Dickel, Axel Visel, Bing Ren, Ross C. Hardison, Yu Zhang, B Wold	97
12	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution 2020 ·Nature Biotechnology ·Qiancheng You, Anthony Cheng, Xi Gu, Bryan T. Harada, Miao Yu, Tong Wu, Bing Ren, Zhengqing Ouyang, Chuan He	32
13	Ranking of non-coding pathogenic variants and putative essential regions of the human genome 2019 ·Nature Communications ·(unknown), David Heckerman, Ali Torkamani, Li Yin, Jonathan Sebat, Bing Ren, Amalio Telenti, Julia di Iulio	52
14	Joint profiling of DNA methylation and chromatin architecture in single cells 2019 ·Nature Methods ·Guoqiang Li, Yaping Liu, Yanxiao Zhang, Naoki Kubo, Miao Yu, Rongxin Fang, Manolis Kellis, Bing Ren	151
15	MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments 2019 ·PLoS Computational Biology ·Ivan Jurić, Miao Yu, Armen Abnousi, Ramya Raviram, Rongxin Fang, Yuan Zhao, Yanxiao Zhang, Yunjiang Qiu, Yuchen Yang, Yun Li, Bing Ren, Ming Hu	66
16	Finding a Needle in the Haystack: Attention-Based Classification of High Resolution Microscopy Images. 2018 ·arXiv (Cornell University) ·Naofumi Tomita, Behnaz Abdollahi, Jason Wei, Bing Ren, Arief A. Suriawinata, Saeed Hassanpour	4
17	HUGIn: Hi-C Unifying Genomic Interrogator 2017 ·Bioinformatics ·Joshua S. Martin, Zheng Xu, Alex P. Reiner, Karen L. Mohlke, Patrick F. Sullivan, Bing Ren, Ming Hu, Yun Li	37
18	MPE-seq, a new method for the genome-wide analysis of chromatin structure 2015 ·Proceedings of the National Academy of Sciences ·Haruhiko Ishii, James T. Kadonaga, Bing Ren	56
19	Fine Tuning of Craniofacial Morphology by Distant-Acting Enhancers 2013 ·Science ·Catia Attanasio, Alex S. Nord, Yiwen Zhu, Matthew J. Blow, (unknown), Denise K. Liberton, Harris Morrison, Ingrid Plajzer-Frick, Amy Holt, Roya Hosseini, (unknown), Jennifer A. Akiyama, Malak Shoukry, Veena Afzal, Edward M. Rubin, David Fitzpatrick, Bing Ren, Benedikt Hallgrímsson, L Pennacchio, Axel Visel	170
20	Mnt-Deficient Mammary Glands Exhibit Impaired Involution and Tumors with Characteristics of Myc Overexpression 2006 ·Cancer Research ·Kazuhito Toyo‐oka, (unknown), Shinji Hirotsune, Zirong Li, Sonia Jain, Sara Ota, (unknown), Ivan García-Bassets, Jean Lozach, Michael G. Rosenfeld, Christopher K. Glass, Robert N. Eisenman, Bing Ren, Peter J. Hurlin, Anthony Wynshaw‐Boris	28

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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