J. Michael Cherry

100.4k total citations · 6 hit papers
95 papers, 40.4k citations indexed

About

J. Michael Cherry is a scholar working on Molecular Biology, Food Science and Plant Science. According to data from OpenAlex, J. Michael Cherry has authored 95 papers receiving a total of 40.4k indexed citations (citations by other indexed papers that have themselves been cited), including 82 papers in Molecular Biology, 11 papers in Food Science and 9 papers in Plant Science. Recurrent topics in J. Michael Cherry's work include Bioinformatics and Genomic Networks (39 papers), Fungal and yeast genetics research (28 papers) and Genomics and Phylogenetic Studies (22 papers). J. Michael Cherry is often cited by papers focused on Bioinformatics and Genomic Networks (39 papers), Fungal and yeast genetics research (28 papers) and Genomics and Phylogenetic Studies (22 papers). J. Michael Cherry collaborates with scholars based in United States, United Kingdom and South Korea. J. Michael Cherry's co-authors include David Botstein, Gavin Sherlock, Selina S. Dwight, Catherine A. Ball, Midori A. Harris, Kara Dolinski, Laurie Issel‐Tarver, Judith A. Blake, Michael Ashburner and Allan Peter Davis and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

J. Michael Cherry

94 papers receiving 39.6k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Gene Ontology: tool for the unification of biology

2000 30.2k citations Michael Ashburner, Catherine A. Ball et al. Nature Genetics profile →
Annotation of functional variation in personal genomes using RegulomeDB

2012 1.7k citations Alan P. Boyle, Eurie L. Hong et al. Genome Research profile →
GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

2004 1.5k citations Shuai Weng, David Botstein et al. profile →
The Encyclopedia of DNA elements (ENCODE): data portal update

2017 1.1k citations Carrie Davis, Benjamin C. Hitz et al. Nucleic Acids Research profile →
SGD: Saccharomyces Genome Database

1998 871 citations J. Michael Cherry Nucleic Acids Research profile →
Saccharomyces genome database

2002 531 citations Laurie Issel‐Tarver, Karen Christie et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
J. Michael Cherry United States	35	29.4k	5.4k	4.9k	4.0k	2.8k	95	40.4k
Janan T. Eppig United States	42	26.6k 0.9×	5.9k 1.1×	3.9k 0.8×	3.8k 0.9×	2.8k 1.0×	109	37.4k
Judith A. Blake United States	48	26.4k 0.9×	4.9k 0.9×	3.7k 0.8×	3.7k 0.9×	2.7k 1.0×	137	36.9k
Kara Dolinski United States	31	28.8k 1.0×	4.6k 0.9×	3.8k 0.8×	3.7k 0.9×	2.8k 1.0×	44	38.7k
Catherine A. Ball United States	29	25.2k 0.9×	4.6k 0.9×	3.7k 0.8×	3.6k 0.9×	2.5k 0.9×	48	35.3k
Joel E. Richardson United States	35	24.3k 0.8×	4.6k 0.9×	3.6k 0.7×	3.5k 0.9×	2.6k 0.9×	81	34.7k
Martin Ringwald United States	29	24.5k 0.8×	4.2k 0.8×	3.5k 0.7×	3.4k 0.8×	2.5k 0.9×	57	33.8k
David P. Hill United States	28	23.6k 0.8×	4.1k 0.8×	3.6k 0.7×	3.4k 0.8×	2.4k 0.9×	55	33.3k
Midori A. Harris United Kingdom	24	23.7k 0.8×	4.0k 0.7×	3.6k 0.7×	3.4k 0.8×	2.4k 0.9×	44	32.8k
Selina S. Dwight United States	13	23.2k 0.8×	4.0k 0.7×	3.6k 0.7×	3.3k 0.8×	2.4k 0.8×	20	32.2k
Allan Peter Davis United States	32	25.8k 0.9×	4.4k 0.8×	3.5k 0.7×	3.7k 0.9×	2.7k 0.9×	55	36.5k

Countries citing papers authored by J. Michael Cherry

Since Specialization

Citations

This map shows the geographic impact of J. Michael Cherry's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by J. Michael Cherry with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites J. Michael Cherry more than expected).

Fields of papers citing papers by J. Michael Cherry

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by J. Michael Cherry. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by J. Michael Cherry. The network helps show where J. Michael Cherry may publish in the future.

Co-authorship network of co-authors of J. Michael Cherry

This figure shows the co-authorship network connecting the top 25 collaborators of J. Michael Cherry. A scholar is included among the top collaborators of J. Michael Cherry based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with J. Michael Cherry. J. Michael Cherry is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Engel, Stacia R., Suzi Aleksander, Robert S Nash, et al.. (2024). Saccharomyces Genome Database: advances in genome annotation, expanded biochemical pathways, and other key enhancements. Genetics. 229(3). 8 indexed citations

Wong, Edith D., Stuart R. Miyasato, Suzi Aleksander, et al.. (2023). Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources. Genetics. 224(1). 58 indexed citations

Engel, Stacia R., Edith D. Wong, Robert S Nash, et al.. (2021). New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources. Genetics. 220(4). 43 indexed citations

Wong, Edith D., Marek S. Skrzypek, Shuai Weng, et al.. (2019). Integration of macromolecular complex data into theSaccharomycesGenome Database. Database. 2019. 9 indexed citations

Song, Giltae, Seokwoo Kang, Ho-Yong Lee, et al.. (2019). Integrative Meta-Assembly Pipeline (IMAP): Chromosome-level genome assembler combining multiple de novo assemblies. PLoS ONE. 14(8). e0221858–e0221858. 6 indexed citations

Ng, Patrick, Edith D. Wong, Kevin MacPherson‐Hawthorne, et al.. (2019). Transcriptome visualization and data availability at the Saccharomyces Genome Database. Nucleic Acids Research. 48(D1). D743–D748. 13 indexed citations

Skrzypek, Marek S., Robert S Nash, Edith D. Wong, et al.. (2017). Saccharomyces genome database informs human biology. Nucleic Acids Research. 46(D1). D736–D742. 24 indexed citations

Davis, Carrie, Benjamin C. Hitz, Cricket A. Sloan, et al.. (2017). The Encyclopedia of DNA elements (ENCODE): data portal update. Nucleic Acids Research. 46(D1). D794–D801. 1060 indexed citations breakdown →

Sloan, Cricket A., Esther T. Chan, Jean M. Davidson, et al.. (2015). ENCODE data at the ENCODE portal. Nucleic Acids Research. 44(D1). D726–D732. 317 indexed citations

10.

Boyle, Alan P., Eurie L. Hong, Manoj Hariharan, et al.. (2012). Annotation of functional variation in personal genomes using RegulomeDB. Genome Research. 22(9). 1790–1797. 1713 indexed citations breakdown →

11.

Rangarajan, Arun, Tim Schedl, Karen Yook, et al.. (2011). Toward an interactive article: integrating journals and biological databases. BMC Bioinformatics. 12(1). 175–175. 7 indexed citations

12.

Tian, Weidong, Lan V. Zhang, Murat Taşan, et al.. (2008). Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiaegene function. Genome biology. 9(S1). S7–S7. 76 indexed citations

13.

Cherry, J. Michael, et al.. (2004). Concept Extraction and Synonymy Management for Biomedical Information Retrieval. Text REtrieval Conference. 4 indexed citations

14.

Dong, Qing, Rama Balakrishnan, Gail Binkley, et al.. (2004). Gene function, metabolic pathways and comparative genomics in yeast. 25. 437–438. 1 indexed citations

15.

Ashburner, Michael, Catherine A. Ball, Judith A. Blake, et al.. (2000). Gene Ontology: tool for the unification of biology. Nature Genetics. 25(1). 25–29. 30198 indexed citations breakdown →

16.

Shaw, et al.. (1999). Gene Ontology A controlled vocabulary to describe the function, biological process and cellular location of gene products in genome databases. The American Journal of Human Genetics. 65(4). 419. 9 indexed citations

17.

Rhee, Seung Y., et al.. (1999). Unified display of Arabidopsis thaliana physical maps from AtDB, the A.thaliana database. Nucleic Acids Research. 27(1). 79–84. 12 indexed citations

18.

Cherry, J. Michael. (1998). SGD: Saccharomyces Genome Database. Nucleic Acids Research. 26(1). 73–79. 871 indexed citations breakdown →

19.

Cherry, J. Michael, Catherine A. Ball, Shuai Weng, et al.. (1997). Genetic and physical maps of Saccharomyces cerevisiae. Nature. 387(S6632). 67–73. 167 indexed citations

20.

Cherry, J. Michael. (1995). Computer Manipulation of DNA and Protein Sequences. Current Protocols in Molecular Biology. 30(1). Unit7.7–Unit7.7. 2 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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