Barry Stoddard

10.7k total citations · 5 hit papers
77 papers, 8.2k citations indexed

About

Barry Stoddard is a scholar working on Molecular Biology, Materials Chemistry and Genetics. According to data from OpenAlex, Barry Stoddard has authored 77 papers receiving a total of 8.2k indexed citations (citations by other indexed papers that have themselves been cited), including 61 papers in Molecular Biology, 28 papers in Materials Chemistry and 8 papers in Genetics. Recurrent topics in Barry Stoddard's work include Enzyme Structure and Function (26 papers), Protein Structure and Dynamics (25 papers) and RNA and protein synthesis mechanisms (20 papers). Barry Stoddard is often cited by papers focused on Enzyme Structure and Function (26 papers), Protein Structure and Dynamics (25 papers) and RNA and protein synthesis mechanisms (20 papers). Barry Stoddard collaborates with scholars based in United States, South Africa and Switzerland. Barry Stoddard's co-authors include David Baker, Gregory C. Ireton, Gautam Dantas, Gabriele Varani, Brian Kuhlman, Betty Shen, Jasmine L. Gallaher, Margaret E. Black, Daniel E. Koshland and Andrew D. Mesecar and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

Barry Stoddard

77 papers receiving 8.1k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

2003 1.3k citations Brian Kuhlman, Gautam Dantas et al. Science profile →
De Novo Computational Design of Retro-Aldol Enzymes

2008 890 citations Lindsey Doyle, Alexandre Zanghellini et al. Science profile →
Computational Design of an Enzyme Catalyst for a Stereoselective Bimolecular Diels-Alder Reaction

2010 692 citations Justin B. Siegel, Alexandre Zanghellini et al. Science profile →
Computational protein design enables a novel one-carbon assimilation pathway

2015 315 citations Justin B. Siegel, Sean Poust et al. Proceedings of the National Academy of Sciences profile →
De novo design of a fluorescence-activating β-barrel

2018 249 citations Jiayi Dou, Anastassia A. Vorobieva et al. Nature profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Barry Stoddard United States	39	6.3k	2.0k	607	604	600	77	8.2k
John R. Engen United States	53	7.8k 1.3×	989 0.5×	560 0.9×	586 1.0×	1.3k 2.2×	194	11.3k
Jean‐Paul Mornon France	42	4.1k 0.7×	702 0.3×	450 0.7×	533 0.9×	248 0.4×	132	6.5k
Gleb Bourenkov Germany	43	4.9k 0.8×	1.7k 0.8×	327 0.5×	227 0.4×	151 0.3×	114	7.4k
Anthony A. Kossiakoff United States	52	6.7k 1.1×	1.3k 0.7×	231 0.4×	533 0.9×	1.7k 2.9×	173	9.5k
Paul A. Bates United Kingdom	53	6.5k 1.0×	1.4k 0.7×	199 0.3×	977 1.6×	658 1.1×	184	10.0k
Roberto Sánchez United States	32	5.6k 0.9×	1.0k 0.5×	255 0.4×	340 0.6×	224 0.4×	66	7.2k
M.E.M. Noble United Kingdom	63	9.9k 1.6×	2.1k 1.0×	294 0.5×	1.5k 2.5×	400 0.7×	144	13.7k
Virginia W. Cornish United States	38	7.5k 1.2×	630 0.3×	197 0.3×	1.3k 2.2×	648 1.1×	95	10.9k
Chung‐Jung Tsai United States	52	8.7k 1.4×	2.1k 1.1×	168 0.3×	382 0.6×	474 0.8×	132	10.4k
Masoud Vedadi Canada	49	7.9k 1.3×	650 0.3×	249 0.4×	558 0.9×	277 0.5×	141	9.7k

Countries citing papers authored by Barry Stoddard

Since Specialization

Citations

This map shows the geographic impact of Barry Stoddard's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Barry Stoddard with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Barry Stoddard more than expected).

Fields of papers citing papers by Barry Stoddard

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Barry Stoddard. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Barry Stoddard. The network helps show where Barry Stoddard may publish in the future.

Co-authorship network of co-authors of Barry Stoddard

This figure shows the co-authorship network connecting the top 25 collaborators of Barry Stoddard. A scholar is included among the top collaborators of Barry Stoddard based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Barry Stoddard. Barry Stoddard is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Glasscock, Cameron J., Ryan McHugh, Lindsey Doyle, et al.. (2025). Computational design of sequence-specific DNA-binding proteins. Nature Structural & Molecular Biology. 32(11). 2252–2261. 1 indexed citations

Lee, Sangmin, Ryan D. Kibler, Green Ahn, et al.. (2024). Four-component protein nanocages designed by programmed symmetry breaking. Nature. 638(8050). 546–552. 16 indexed citations

Kibler, Ryan D., Sangmin Lee, Basile I. M. Wicky, et al.. (2024). Design of pseudosymmetric protein hetero-oligomers. Nature Communications. 15(1). 10684–10684. 5 indexed citations

Doyle, Lindsey, Ryan D. Kibler, Lukas F. Milles, et al.. (2023). De novo design of knotted tandem repeat proteins. Nature Communications. 14(1). 6746–6746. 10 indexed citations

Doyle, Lindsey, Betty Shen, Mesfin Gewe, et al.. (2021). Design of functionalised circular tandem repeat proteins with longer repeat topologies and enhanced subunit contact surfaces. Communications Biology. 4(1). 1240–1240. 5 indexed citations

Correnti, Colin, Lindsey Doyle, Carla A. Jaeger-Ruckstuhl, et al.. (2020). Engineering and functionalization of large circular tandem repeat protein nanoparticles. Nature Structural & Molecular Biology. 27(4). 342–350. 14 indexed citations

Dou, Jiayi, Anastassia A. Vorobieva, William Sheffler, et al.. (2018). De novo design of a fluorescence-activating β-barrel. Nature. 561(7724). 485–491. 249 indexed citations breakdown →

Siegel, Justin B., Sean Poust, Adam J. Wargacki, et al.. (2015). Computational protein design enables a novel one-carbon assimilation pathway. Proceedings of the National Academy of Sciences. 112(12). 3704–3709. 315 indexed citations breakdown →

Mills, Jeremy H., Sagar D. Khare, Jill M. Bolduc, et al.. (2013). Computational Design of an Unnatural Amino Acid Dependent Metalloprotein with Atomic Level Accuracy. Journal of the American Chemical Society. 135(36). 13393–13399. 94 indexed citations

10.

Siegel, Justin B., Alexandre Zanghellini, Helena M. Lovick, et al.. (2010). Computational Design of an Enzyme Catalyst for a Stereoselective Bimolecular Diels-Alder Reaction. Science. 329(5989). 309–313. 692 indexed citations breakdown →

11.

Murphy, Paul, Jill M. Bolduc, Jasmine L. Gallaher, Barry Stoddard, & David Baker. (2009). Alteration of enzyme specificity by computational loop remodeling and design. Proceedings of the National Academy of Sciences. 106(23). 9215–9220. 112 indexed citations

12.

Ardiani, Andressa, et al.. (2009). Bacterial Cytosine Deaminase Mutants Created by Molecular Engineering Show Improved 5-Fluorocytosine–Mediated Cell Killing In vitro and In vivo. Cancer Research. 69(11). 4791–4799. 35 indexed citations

13.

Dantas, Gautam, Alexander L. Watters, Bradley M. Lunde, et al.. (2006). Mis-translation of a Computationally Designed Protein Yields an Exceptionally Stable Homodimer: Implications for Protein Engineering and Evolution. Journal of Molecular Biology. 362(5). 1004–1024. 24 indexed citations

14.

Korkegian, Aaron, Margaret E. Black, David Baker, & Barry Stoddard. (2005). Computational Thermostabilization of an Enzyme. Science. 308(5723). 857–860. 287 indexed citations

15.

Perraud, Anne-Laure, Christina L. Takanishi, Betty Shen, et al.. (2004). Accumulation of Free ADP-ribose from Mitochondria Mediates Oxidative Stress-induced Gating of TRPM2 Cation Channels. Journal of Biological Chemistry. 280(7). 6138–6148. 290 indexed citations

16.

Perraud, Anne‐Laure, Betty Shen, Christopher Dunn, et al.. (2003). NUDT9, a Member of the Nudix Hydrolase Family, Is an Evolutionarily Conserved Mitochondrial ADP-ribose Pyrophosphatase. Journal of Biological Chemistry. 278(3). 1794–1801. 98 indexed citations

17.

Shen, Betty, Anne-Laure Perraud, Andrew M. Scharenberg, & Barry Stoddard. (2003). The Crystal Structure and Mutational Analysis of Human NUDT9. Journal of Molecular Biology. 332(2). 385–398. 79 indexed citations

18.

Spiegel, Paul & Barry Stoddard. (2002). Optimization of factor VIII replacement therapy: can structural studies help in evading antibody inhibitors?. British Journal of Haematology. 119(2). 310–322. 11 indexed citations

19.

Stoddard, Barry. (2001). Trapping Reaction Intermediates in Macromolecular Crystals for Structural Analyses. Methods. 24(2). 125–138. 25 indexed citations

20.

Cheung, Edwin, et al.. (1997). Purification, crystallization, and preliminary X-ray studies of a bifunctional 5,10-methenyl/methylene tetrahydrofolate cyclohydrolase/dehydrogenase fromEscherichia coli. Proteins Structure Function and Bioinformatics. 27(2). 322–324. 2 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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