Barry Stoddard

10.7k citations

77 papers · 8.2k indexed · 5 hit papers · h-index 39

Molecular Biology top 0.5%
Materials Chemistry top 2%
Hematology top 2%
Organic Chemistry top 5%
Radiology, Nuclear Medicine and Imaging top 2%

Co-authors: David Baker Gregory C. Ireton Gautam Dantas Gabriele Varani Brian Kuhlman Betty Shen Jasmine L. Gallaher Margaret E. Black
Topics: Enzyme Structure and Function (26 papers)Protein Structure and Dynamics (25 papers)RNA and protein synthesis mechanisms (20 papers)
Cited by: Molecular Biology Sensory Systems Hematology
Journals: Nature Science Cell
Partner nations: United States South Africa Switzerland

In The Last Decade

Barry Stoddard

77 papers receiving 8.1k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

2003 1.3k citations Brian Kuhlman, Gautam Dantas et al. Science profile →
De Novo Computational Design of Retro-Aldol Enzymes

2008 890 citations Lindsey Doyle, Alexandre Zanghellini et al. Science profile →
Computational Design of an Enzyme Catalyst for a Stereoselective Bimolecular Diels-Alder Reaction

2010 692 citations Justin B. Siegel, Alexandre Zanghellini et al. Science profile →
Computational protein design enables a novel one-carbon assimilation pathway

2015 315 citations Justin B. Siegel, Sean Poust et al. Proceedings of the National Academy of Sciences profile →
De novo design of a fluorescence-activating β-barrel

2018 249 citations Jiayi Dou, Anastassia A. Vorobieva et al. Nature profile →

Peers

Countries citing papers authored by Barry Stoddard

Since Specialization

Citations

This map shows the geographic impact of Barry Stoddard's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Barry Stoddard with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Barry Stoddard more than expected).

Fields of papers citing papers by Barry Stoddard

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Barry Stoddard. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Barry Stoddard. The network helps show where Barry Stoddard may publish in the future.

Co-authorship network of co-authors of Barry Stoddard

This figure shows the co-authorship network connecting the top 25 collaborators of Barry Stoddard. A scholar is included among the top collaborators of Barry Stoddard based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Barry Stoddard. Barry Stoddard is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Computational design of sequence-specific DNA-binding proteins 2025 ·Nature Structural & Molecular Biology ·Cameron J. Glasscock,(unknown),Ryan McHugh,Lindsey Doyle,Wei Chen,(unknown),(unknown),(unknown),Yuliya Politanska,Hugh K. Haddox,David Cox,Christoffer Norn,Brian Coventry,Inna Goreshnik,Dionne Vafeados,Gyu Rie Lee,Raluca Gordân,Barry Stoddard,Frank DiMaio,David Baker	1
2	Four-component protein nanocages designed by programmed symmetry breaking 2024 ·Nature ·Sangmin Lee,Ryan D. Kibler,Green Ahn,Yang Hsia,Andrew J. Borst,(unknown),(unknown),Buwei Huang,Barry Stoddard,David Baker	16
3	Design of pseudosymmetric protein hetero-oligomers 2024 ·Nature Communications ·Ryan D. Kibler,Sangmin Lee,(unknown),Basile I. M. Wicky,(unknown),(unknown),Ann G. Carr,Xinting Li,Cameron M. Chow,Tina K. Nguyen,Lauren Carter,Vicki H. Wysocki,Barry Stoddard,David Baker	5
4	De novo design of knotted tandem repeat proteins 2023 ·Nature Communications ·Lindsey Doyle,(unknown),Ryan D. Kibler,Lukas F. Milles,(unknown),(unknown),Sophie Jackson,Barry Stoddard,Philip Bradley	10
5	Design of functionalised circular tandem repeat proteins with longer repeat topologies and enhanced subunit contact surfaces 2021 ·Communications Biology ·(unknown),Lindsey Doyle,Betty Shen,Mesfin Gewe,(unknown),(unknown),Della Friend,James Roberts,Philip Bradley,Barry Stoddard	5
6	Engineering and functionalization of large circular tandem repeat protein nanoparticles 2020 ·Nature Structural & Molecular Biology ·Colin Correnti,(unknown),Lindsey Doyle,(unknown),Carla A. Jaeger-Ruckstuhl,Yuexin Xu,Betty Shen,(unknown),(unknown),Della Friend,Ashok D. Bandaranayake,Stanley R. Riddell,Brett K. Kaiser,Barry Stoddard,Philip Bradley	14
7	De novo design of a fluorescence-activating β-barrelbreakdown → 2018 ·Nature ·Jiayi Dou,Anastassia A. Vorobieva,William Sheffler,Lindsey Doyle,Hahnbeom Park,Matthew J. Bick,Binchen Mao,Glenna Foight,Min Yen Lee,Lauren Gagnon,Lauren Carter,Banumathi Sankaran,Sergey Ovchinnikov,Enrique Marcos,Po‐Ssu Huang,Joshua C. Vaughan,Barry Stoddard,David Baker	249
8	Computational protein design enables a novel one-carbon assimilation pathwaybreakdown → 2015 ·Proceedings of the National Academy of Sciences ·Justin B. Siegel,(unknown),Sean Poust,Adam J. Wargacki,Arren Bar‐Even,(unknown),Betty Shen,Christopher B. Eiben,Huu M. Tran,Εlad Noor,Jasmine L. Gallaher,Jacob B. Bale,Yasuo Yoshikuni,Michael H. Gelb,Jay D. Keasling,Barry Stoddard,Mary E. Lidstrom,David Baker	315
9	Computational Design of an Unnatural Amino Acid Dependent Metalloprotein with Atomic Level Accuracy 2013 ·Journal of the American Chemical Society ·Jeremy H. Mills,Sagar D. Khare,Jill M. Bolduc,F. Forouhar,Vikram Khipple Mulligan,Scott Lew,J. Seetharaman,Liang Tong,Barry Stoddard,David Baker	94
10	Computational Design of an Enzyme Catalyst for a Stereoselective Bimolecular Diels-Alder Reactionbreakdown → 2010 ·Science ·Justin B. Siegel,Alexandre Zanghellini,Helena M. Lovick,Gert Kiss,Abigail R. Lambert,(unknown),Jasmine L. Gallaher,Donald Hilvert,Michael H. Gelb,Barry Stoddard,K. N. Houk,Forrest E. Michael,David Baker	692
11	Alteration of enzyme specificity by computational loop remodeling and design 2009 ·Proceedings of the National Academy of Sciences ·Paul Murphy,Jill M. Bolduc,Jasmine L. Gallaher,Barry Stoddard,David Baker	112
12	Bacterial Cytosine Deaminase Mutants Created by Molecular Engineering Show Improved 5-Fluorocytosine–Mediated Cell Killing In vitro and In vivo 2009 ·Cancer Research ·(unknown),Andressa Ardiani,Lei Zhao,(unknown),Barry Stoddard,Margaret E. Black	35
13	Mis-translation of a Computationally Designed Protein Yields an Exceptionally Stable Homodimer: Implications for Protein Engineering and Evolution 2006 ·Journal of Molecular Biology ·Gautam Dantas,Alexander L. Watters,Bradley M. Lunde,Ziad M. Eletr,Nancy Isern,(unknown),Jan Lipfert,Sebastian Doniach,Martin Tompa,Brian Kuhlman,Barry Stoddard,Gabriele Varani,David Baker	24
14	Computational Thermostabilization of an Enzyme 2005 ·Science ·Aaron Korkegian,Margaret E. Black,David Baker,Barry Stoddard	287
15	Accumulation of Free ADP-ribose from Mitochondria Mediates Oxidative Stress-induced Gating of TRPM2 Cation Channels 2004 ·Journal of Biological Chemistry ·Anne-Laure Perraud,Christina L. Takanishi,Betty Shen,Shin Jung Kang,Megan Smith,Carsten Schmitz,(unknown),Dana Ferraris,Weixing Li,Jie Zhang,Barry Stoddard,Andrew M. Scharenberg	290
16	NUDT9, a Member of the Nudix Hydrolase Family, Is an Evolutionarily Conserved Mitochondrial ADP-ribose Pyrophosphatase 2003 ·Journal of Biological Chemistry ·Anne‐Laure Perraud,Betty Shen,Christopher Dunn,Karsten Rippe,Megan Smith,Maurice Bessman,Barry Stoddard,Andrew M. Scharenberg	98
17	The Crystal Structure and Mutational Analysis of Human NUDT9 2003 ·Journal of Molecular Biology ·Betty Shen,Anne-Laure Perraud,Andrew M. Scharenberg,Barry Stoddard	79
18	Optimization of factor VIII replacement therapy: can structural studies help in evading antibody inhibitors? 2002 ·British Journal of Haematology ·Paul Spiegel,Barry Stoddard	11
19	Trapping Reaction Intermediates in Macromolecular Crystals for Structural Analyses 2001 ·Methods ·Barry Stoddard	25
20	Purification, crystallization, and preliminary X-ray studies of a bifunctional 5,10-methenyl/methylene tetrahydrofolate cyclohydrolase/dehydrogenase fromEscherichia coli 1997 ·Proteins Structure Function and Bioinformatics ·Edwin Cheung,Linda D'Ari,Jesse C. Rabinowitz,David H. Dyer,(unknown),Barry Stoddard	2

About Barry Stoddard

Barry Stoddard is a scholar working on Molecular Biology, Biochemistry and Physiology, having authored 77 papers that have together received 8.2k indexed citations. Recurring topics across this work include Enzyme Structure and Function (26 papers), Protein Structure and Dynamics (25 papers) and RNA and protein synthesis mechanisms (20 papers). The work is most often cited by research in Molecular Biology (6.3k citations), Sensory Systems (307 citations) and Hematology (607 citations). Barry Stoddard has collaborated with scholars based in United States, South Africa and Switzerland. Frequent co-authors include David Baker, Gregory C. Ireton, Gautam Dantas, Gabriele Varani, Brian Kuhlman, Betty Shen, Jasmine L. Gallaher, Margaret E. Black, Daniel E. Koshland and Andrew D. Mesecar. Their work appears in journals such as Nature, Science and Cell.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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