Lindsey Doyle

3.0k total citations · 3 hit papers
22 papers, 2.1k citations indexed

About

Lindsey Doyle is a scholar working on Molecular Biology, Ecology and Genetics. According to data from OpenAlex, Lindsey Doyle has authored 22 papers receiving a total of 2.1k indexed citations (citations by other indexed papers that have themselves been cited), including 20 papers in Molecular Biology, 6 papers in Ecology and 6 papers in Genetics. Recurrent topics in Lindsey Doyle's work include RNA and protein synthesis mechanisms (10 papers), Protein Structure and Dynamics (6 papers) and Bacteriophages and microbial interactions (6 papers). Lindsey Doyle is often cited by papers focused on RNA and protein synthesis mechanisms (10 papers), Protein Structure and Dynamics (6 papers) and Bacteriophages and microbial interactions (6 papers). Lindsey Doyle collaborates with scholars based in United States, United Kingdom and Switzerland. Lindsey Doyle's co-authors include David Baker, Barry Stoddard, Barry Stoddard, Donald Hilvert, Fernando R. Clemente, Fujie Tanaka, Lin Jiang, Alexandre Zanghellini, Jasmine L. Gallaher and K. N. Houk and has published in prestigious journals such as Nature, Science and Nucleic Acids Research.

In The Last Decade

Lindsey Doyle

21 papers receiving 2.0k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

De Novo Computational Design of Retro-Aldol Enzymes

2008 890 citations Lin Jiang, Eric A. Althoff et al. Science profile →
Computational design of ligand-binding proteins with high affinity and selectivity

2013 325 citations Christine E. Tinberg, Sagar D. Khare et al. Nature profile →
De novo design of a fluorescence-activating β-barrel

2018 249 citations Jiayi Dou, Anastassia A. Vorobieva et al. Nature profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Lindsey Doyle United States	15	1.7k	452	201	172	165	22	2.1k
Giulia Palermo United States	32	2.3k 1.3×	349 0.8×	211 1.0×	217 1.3×	50 0.3×	89	3.0k
Harumi Fukada Japan	22	1.3k 0.8×	246 0.5×	94 0.5×	95 0.6×	219 1.3×	65	1.8k
Yifan Song China	18	2.3k 1.3×	633 1.4×	87 0.4×	237 1.4×	260 1.6×	46	3.0k
Roberto Tejero Spain	22	1.5k 0.9×	674 1.5×	160 0.8×	173 1.0×	140 0.8×	60	2.1k
Jason W. Labonte United States	15	1.4k 0.8×	271 0.6×	128 0.6×	198 1.2×	193 1.2×	24	1.8k
Thomas J. Magliery United States	22	1.7k 1.0×	255 0.6×	128 0.6×	326 1.9×	226 1.4×	51	2.1k
Vikram Khipple Mulligan United States	20	2.5k 1.4×	494 1.1×	171 0.9×	167 1.0×	315 1.9×	32	3.0k
Pedro L. Mateo Spain	26	2.1k 1.2×	792 1.8×	182 0.9×	83 0.5×	111 0.7×	65	2.5k
Christopher R. Otey United States	12	1.5k 0.8×	241 0.5×	125 0.6×	350 2.0×	147 0.9×	15	1.9k
L. Serrano Germany	12	2.6k 1.5×	726 1.6×	120 0.6×	337 2.0×	215 1.3×	18	3.2k

Countries citing papers authored by Lindsey Doyle

Since Specialization

Citations

This map shows the geographic impact of Lindsey Doyle's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Lindsey Doyle with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Lindsey Doyle more than expected).

Fields of papers citing papers by Lindsey Doyle

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Lindsey Doyle. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Lindsey Doyle. The network helps show where Lindsey Doyle may publish in the future.

Co-authorship network of co-authors of Lindsey Doyle

This figure shows the co-authorship network connecting the top 25 collaborators of Lindsey Doyle. A scholar is included among the top collaborators of Lindsey Doyle based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Lindsey Doyle. Lindsey Doyle is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Doyle, Lindsey, Maria Puiu, Abigail Kelly, et al.. (2025). PglZ from Type I BREX phage defence systems is a metal-dependent nuclease that forms a sub-complex with BrxB. Nucleic Acids Research. 53(12).

Glasscock, Cameron J., Ryan McHugh, Lindsey Doyle, et al.. (2025). Computational design of sequence-specific DNA-binding proteins. Nature Structural & Molecular Biology. 32(11). 2252–2261. 1 indexed citations

Grünberg, Sebastian, Lindsey Doyle, Nan Dai, et al.. (2023). The structural basis of mRNA recognition and binding by yeast pseudouridine synthase PUS1. PLoS ONE. 18(11). e0291267–e0291267. 4 indexed citations

Doyle, Lindsey, Ryan D. Kibler, Lukas F. Milles, et al.. (2023). De novo design of knotted tandem repeat proteins. Nature Communications. 14(1). 6746–6746. 10 indexed citations

Shen, Betty, Lindsey Doyle, Yvette A. Luyten, et al.. (2023). Structure, substrate binding and activity of a unique AAA+ protein: the BrxL phage restriction factor. Nucleic Acids Research. 51(8). 3513–3528. 15 indexed citations

Luyten, Yvette A., Lindsey Doyle, Abigail R. Lambert, et al.. (2022). Identification and characterization of the WYL BrxR protein and its gene as separable regulatory elements of a BREX phage restriction system. Nucleic Acids Research. 50(9). 5171–5190. 29 indexed citations

Doyle, Lindsey, Betty Shen, Mesfin Gewe, et al.. (2021). Design of functionalised circular tandem repeat proteins with longer repeat topologies and enhanced subunit contact surfaces. Communications Biology. 4(1). 1240–1240. 5 indexed citations

Doyle, Lindsey, Lauren Gagnon, Min Yen Lee, et al.. (2021). Incorporation of sensing modalities into de novo designed fluorescence-activating proteins. Nature Communications. 12(1). 856–856. 25 indexed citations

Correnti, Colin, Lindsey Doyle, Carla A. Jaeger-Ruckstuhl, et al.. (2020). Engineering and functionalization of large circular tandem repeat protein nanoparticles. Nature Structural & Molecular Biology. 27(4). 342–350. 14 indexed citations

10.

Dou, Jiayi, Anastassia A. Vorobieva, William Sheffler, et al.. (2018). De novo design of a fluorescence-activating β-barrel. Nature. 561(7724). 485–491. 249 indexed citations breakdown →

11.

Rinaldi, Fábio C., Lindsey Doyle, Barry Stoddard, & Adam J. Bogdanove. (2017). The effect of increasing numbers of repeats on TAL effector DNA binding specificity. Nucleic Acids Research. 45(11). 6960–6970. 32 indexed citations

12.

Dou, Jiayi, Lindsey Doyle, Per Greisen, et al.. (2017). Sampling and energy evaluation challenges in ligand binding protein design. Protein Science. 26(12). 2426–2437. 31 indexed citations

13.

Doyle, Lindsey, Jill M. Bolduc, Fabio Parmeggiani, et al.. (2015). Rational design of α-helical tandem repeat proteins with closed architectures. Nature. 528(7583). 585–588. 99 indexed citations

14.

Smith, Richard D., Kelly L. Damm‐Ganamet, James B. Dunbar, et al.. (2015). CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge. Journal of Chemical Information and Modeling. 56(6). 1022–1031. 43 indexed citations

15.

King, Chris, Lindsey Doyle, A.P. Kuzin, et al.. (2015). Precise assembly of complex beta sheet topologies from de novo designed building blocks. eLife. 4. 16 indexed citations

16.

Galizi, Roberto, Lindsey Doyle, Federica Bernardini, et al.. (2014). A synthetic sex ratio distortion system for the control of the human malaria mosquito. Nature Communications. 5(1). 3977–3977. 207 indexed citations

17.

Tinberg, Christine E., Sagar D. Khare, Jiayi Dou, et al.. (2013). Computational design of ligand-binding proteins with high affinity and selectivity. Nature. 501(7466). 212–216. 325 indexed citations breakdown →

18.

Ulge, Umut Y., et al.. (2011). Comprehensive homing endonuclease target site specificity profiling reveals evolutionary constraints and enables genome engineering applications. Nucleic Acids Research. 40(6). 2587–2598. 14 indexed citations

19.

Jarjour, Jordan, Hoku West‐Foyle, Michael T. Certo, et al.. (2009). High-resolution profiling of homing endonuclease binding and catalytic specificity using yeast surface display. Nucleic Acids Research. 37(20). 6871–6880. 53 indexed citations

20.

Jiang, Lin, Eric A. Althoff, Fernando R. Clemente, et al.. (2008). De Novo Computational Design of Retro-Aldol Enzymes. Science. 319(5868). 1387–1391. 890 indexed citations breakdown →

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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