Patrick Flaherty

7.1k total citations
34 papers, 1.7k citations indexed

About

Patrick Flaherty is a scholar working on Molecular Biology, Cancer Research and Epidemiology. According to data from OpenAlex, Patrick Flaherty has authored 34 papers receiving a total of 1.7k indexed citations (citations by other indexed papers that have themselves been cited), including 20 papers in Molecular Biology, 8 papers in Cancer Research and 7 papers in Epidemiology. Recurrent topics in Patrick Flaherty's work include Cancer Genomics and Diagnostics (8 papers), Genomics and Phylogenetic Studies (6 papers) and Gene expression and cancer classification (5 papers). Patrick Flaherty is often cited by papers focused on Cancer Genomics and Diagnostics (8 papers), Genomics and Phylogenetic Studies (6 papers) and Gene expression and cancer classification (5 papers). Patrick Flaherty collaborates with scholars based in United States, Switzerland and Canada. Patrick Flaherty's co-authors include Louis C. Coyle, Steven M. Kent, Allen J. Taylor, Marina Vernalis, Adam P. Arkin, Michael I. Jordan, Guri Giaever, Jochen Kumm, Hanlee P. Ji and Corey Nislow and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Journal of Biological Chemistry.

In The Last Decade

Patrick Flaherty

33 papers receiving 1.6k citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Patrick Flaherty United States 15 755 336 231 211 209 34 1.7k
Julie Klein France 30 1.2k 1.6× 188 0.6× 121 0.5× 232 1.1× 145 0.7× 107 2.5k
Marie‐Pierre Gratacap France 29 1.1k 1.4× 303 0.9× 412 1.8× 230 1.1× 85 0.4× 57 2.7k
Max Levin Sweden 21 914 1.2× 213 0.6× 154 0.7× 211 1.0× 301 1.4× 56 1.8k
Alexey V. Sorokin United States 22 1.3k 1.7× 219 0.7× 117 0.5× 222 1.1× 353 1.7× 53 2.2k
Huan Deng China 23 692 0.9× 180 0.5× 128 0.6× 200 0.9× 240 1.1× 84 1.7k
Qi Feng China 26 750 1.0× 182 0.5× 128 0.6× 308 1.5× 263 1.3× 96 1.6k
Youngchul Kim United States 29 813 1.1× 370 1.1× 68 0.3× 411 1.9× 238 1.1× 193 2.5k
Xin Luo China 27 1.5k 2.0× 165 0.5× 211 0.9× 252 1.2× 423 2.0× 74 2.9k
Fan Xia China 24 614 0.8× 165 0.5× 100 0.4× 281 1.3× 144 0.7× 115 1.9k

Countries citing papers authored by Patrick Flaherty

Since Specialization
Citations

This map shows the geographic impact of Patrick Flaherty's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Patrick Flaherty with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Patrick Flaherty more than expected).

Fields of papers citing papers by Patrick Flaherty

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Patrick Flaherty. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Patrick Flaherty. The network helps show where Patrick Flaherty may publish in the future.

Co-authorship network of co-authors of Patrick Flaherty

This figure shows the co-authorship network connecting the top 25 collaborators of Patrick Flaherty. A scholar is included among the top collaborators of Patrick Flaherty based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Patrick Flaherty. Patrick Flaherty is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Durán, Iván, Patrick Flaherty, Yok‐Ai Que, et al.. (2024). Development of a biomarker prediction model for post-trauma multiple organ failure/dysfunction syndrome based on the blood transcriptome. Annals of Intensive Care. 14(1). 134–134. 1 indexed citations
2.
Sarsani, Vishal, et al.. (2022). Model-based identification of conditionally-essential genes from transposon-insertion sequencing data. PLoS Computational Biology. 18(3). e1009273–e1009273. 3 indexed citations
3.
Sarsani, Vishal, et al.. (2021). A Bayesian nonparametric model for inferring subclonal populations from structured DNA sequencing data. The Annals of Applied Statistics. 15(2). 925–951.
4.
Tsurumi, Amy, Patrick Flaherty, Yok‐Ai Que, et al.. (2020). Multi-Biomarker Prediction Models for Multiple Infection Episodes Following Blunt Trauma. iScience. 23(11). 101659–101659. 8 indexed citations
5.
Liu, Tao, Haixin Song, Shaoyang Cui, et al.. (2020). Targeted Metabolomic Profiling Reveals Association Between Altered Amino Acids and Poor Functional Recovery After Stroke. Frontiers in Neurology. 10. 1425–1425. 16 indexed citations
6.
Sarsani, Vishal, et al.. (2020). SCSIM: Jointly simulating correlated single-cell and bulk next-generation DNA sequencing data. BMC Bioinformatics. 21(1). 215–215. 5 indexed citations
7.
Ding, Xinxin, et al.. (2018). Conditional genetic screen in Physcomitrella patens reveals a novel microtubule depolymerizing-end-tracking protein. PLoS Genetics. 14(5). e1007221–e1007221. 14 indexed citations
8.
Zhang, Fan & Patrick Flaherty. (2017). Variational inference for rare variant detection in deep, heterogeneous next-generation sequencing data. BMC Bioinformatics. 18(1). 45–45. 2 indexed citations
9.
Defreitas, Timothy, et al.. (2016). GEMINI: a computationally-efficient search engine for large gene expression datasets. BMC Bioinformatics. 17(1). 102–102. 8 indexed citations
10.
Wong, Lai Hong, Sunita Sinha, Julien R. C. Bergeron, et al.. (2016). Reverse Chemical Genetics: Comprehensive Fitness Profiling Reveals the Spectrum of Drug Target Interactions. PLoS Genetics. 12(9). e1006275–e1006275. 10 indexed citations
11.
Flaherty, Patrick & Ronald W. Davis. (2015). Robust Optimization of Biological Protocols. Technometrics. 57(2). 234–244. 4 indexed citations
12.
Yan, Shuangchun, Amy Tsurumi, Yok‐Ai Que, et al.. (2014). Prediction of Multiple Infections After Severe Burn Trauma. Annals of Surgery. 261(4). 781–792. 29 indexed citations
13.
Schiffman, Joshua D., John Hodgson, Scott R. VandenBerg, et al.. (2010). Oncogenic BRAF Mutation with CDKN2A Inactivation Is Characteristic of a Subset of Pediatric Malignant Astrocytomas. Cancer Research. 70(2). 512–519. 185 indexed citations
14.
Flaherty, Patrick, Mala L. Radhakrishnan, Robert A. Rebres, et al.. (2008). A Dual Receptor Crosstalk Model of G-Protein-Coupled Signal Transduction. PLoS Computational Biology. 4(9). e1000185–e1000185. 33 indexed citations
15.
Flaherty, Patrick, Adam P. Arkin, & Michael I. Jordan. (2005). Robust design of biological experiments. Neural Information Processing Systems. 18. 363–370. 49 indexed citations
16.
Flaherty, Patrick, Guri Giaever, Jochen Kumm, Michael I. Jordan, & Adam P. Arkin. (2005). A latent variable model for chemogenomic profiling. Bioinformatics. 21(15). 3286–3293. 48 indexed citations
17.
Giaever, Guri, Patrick Flaherty, Jochen Kumm, et al.. (2004). Chemogenomic profiling: Identifying the functional interactions of small molecules in yeast. Proceedings of the National Academy of Sciences. 101(3). 793–798. 377 indexed citations
18.
19.
Kent, Steven M., et al.. (2003). Effect of atorvastatin and pravastatin on serum C-reactive protein. American Heart Journal. 145(2). P1–P4. 38 indexed citations
20.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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