Timothy T. Harkins

18.0k citations

63 papers · 3.5k indexed · 1 hit paper · h-index 31

Molecular Biology top 5%
Genetics top 2%
Plant Science top 5%
Ecology top 5%
Cancer Research top 10%

Co-authors: Charles B. Grissom Janet E. Lindsley Chinnappa D. Kodira Pascal Bouffard Clarence Lee Philipp W. Simon Dhruba J. SenGupta Christopher Rosenthal
Topics: Genomics and Phylogenetic Studies (17 papers)Cancer Genomics and Diagnostics (10 papers)Genomics and Rare Diseases (6 papers)
Cited by: Horticulture Molecular Biology Genetics
Journals: Science Proceedings of the National Academy of Sciences Journal of the American Chemical Society
Partner nations: United States Netherlands Canada

In The Last Decade

Timothy T. Harkins

63 papers receiving 3.4k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex

2017 326 citations Chongyuan Luo, Christopher L. Keown et al. Science profile →

Peers

Countries citing papers authored by Timothy T. Harkins

Since Specialization

Citations

This map shows the geographic impact of Timothy T. Harkins's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Timothy T. Harkins with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Timothy T. Harkins more than expected).

Fields of papers citing papers by Timothy T. Harkins

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Timothy T. Harkins. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Timothy T. Harkins. The network helps show where Timothy T. Harkins may publish in the future.

Co-authorship network of co-authors of Timothy T. Harkins

This figure shows the co-authorship network connecting the top 25 collaborators of Timothy T. Harkins. A scholar is included among the top collaborators of Timothy T. Harkins based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Timothy T. Harkins. Timothy T. Harkins is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	A GPU-accelerated compute framework for pathogen genomic variant identification to aid genomic epidemiology of infectious disease: a malaria case study 2022 ·Briefings in Bioinformatics ·Giovanna Carpi,(unknown),Timothy T. Harkins,(unknown),Pankaj Vats	4
2	Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum 2020 ·Scientific Reports ·(unknown),(unknown),Cassie Schumacher,Timothy T. Harkins,Álex Aguilar,Asunción Borrell,Marisa Ferreira,Lorenzo Rojas‐Bracho,Kelly M. Robertson,Barbara L. Taylor,Gísli A. Víkingsson,(unknown),Jonathan Romiguier,Phillip A. Morin,Michaël C. Fontaine	17
3	ERASE-Seq: Leveraging replicate measurements to enhance ultralow frequency variant detection in NGS data 2018 ·PLoS ONE ·(unknown),(unknown),Laurie Kurihara,Timothy T. Harkins,Prithwish Pal,(unknown),Cristian Ionescu‐Zanetti	18
4	Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortexbreakdown → 2017 ·Science ·Chongyuan Luo,Christopher L. Keown,Laurie Kurihara,Jingtian Zhou,Yupeng He,Junhao Li,Rosa Castanon,Jacinta Lucero,Joseph R. Nery,Justin P. Sandoval,(unknown),Terrence J. Sejnowski,Timothy T. Harkins,Eran A. Mukamel,M. Margarita Behrens,Joseph R. Ecker	326
5	Genomic Analysis of Uterine Lavage Fluid Detects Early Endometrial Cancers and Reveals a Prevalent Landscape of Driver Mutations in Women without Histopathologic Evidence of Cancer: A Prospective Cross-Sectional Study 2016 ·PLoS Medicine ·Navya Nair,Olga Camacho‐Vanegas,Dmitry Rykunov,(unknown),Sandra Catalina Camacho,Cassie Schumacher,Jonathan C. Irish,Timothy T. Harkins,(unknown),(unknown),Elena Pereira,Sviatoslav M. Kendall,(unknown),Tamara Kalir,Robert Sebra,Boris Reva,Peter Dottino,John A. Martignetti	69
6	The Genome of the Self-Fertilizing Mangrove Rivulus Fish,Kryptolebias marmoratus: A Model for Studying Phenotypic Plasticity and Adaptations to Extreme Environments 2016 ·Genome Biology and Evolution ·Joanna L. Kelley,Muh‐Ching Yee,Anthony P. Brown,(unknown),Andrey Tatarenkov,Clarence Lee,Timothy T. Harkins,Carlos D. Bustamante,Ryan L. Earley	39
7	Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions 2014 ·BMC Genomics ·Bas E. Dutilh,Cristiane C. Thompson,(unknown),Michel A Marín,Clarence Lee,(unknown),Robert Schmieder,(unknown),Luciane A. Chimetto,Daniel Cuevas,Daniel Garza,Iruka N. Okeke,Aaron O. Aboderin,Jessica Spangler,(unknown),Elizabeth A. Dinsdale,Fabiano L. Thompson,Timothy T. Harkins,Robert A. Edwards	20
8	Performance Comparison of Illumina and Ion Torrent Next-Generation Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling 2014 ·Applied and Environmental Microbiology ·Stephen J. Salipante,Toana Kawashima,Christopher Rosenthal,Daniel R. Hoogestraat,Lisa A. Cummings,Dhruba J. SenGupta,Timothy T. Harkins,Brad T. Cookson,Noah G. Hoffman	224
9	Rapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections 2013 ·PLoS ONE ·Stephen J. Salipante,Dhruba J. SenGupta,Christopher Rosenthal,Gina L. Costa,Jessica Spangler,Elizabeth H. Sims,Michael A. Jacobs,Samuel I. Miller,Daniel R. Hoogestraat,Brad T. Cookson,Connor O. McCoy,F. A. Matsen,Jay Shendure,Clarence Lee,Timothy T. Harkins,Noah G. Hoffman	174
10	Genomic and transcriptomic plasticity in treatment-naïve ovarian cancer 2013 ·Genome Research ·Marlous Hoogstraat,Mirjam S. de Pagter,Geert A. Cirkel,Markus J. van Roosmalen,Timothy T. Harkins,Karen Duran,(unknown),Ivo Renkens,Petronella O. Witteveen,Clarence Lee,Isaäc J. Nijman,(unknown),Ruben van ‘t Slot,Trudy N. Jonges,Martijn P. Lolkema,Marco J. Koudijs,Ronald P. Zweemer,Emile E. Voest,Edwin Cuppen,Wigard P. Kloosterman	63
11	The Possibility of De Novo Assembly of the Genome and Population Genomics of the Mangrove Rivulus, Kryptolebias marmoratus 2012 ·Integrative and Comparative Biology ·Joanna L. Kelley,(unknown),(unknown),(unknown),Mihir Shah,Timothy T. Harkins,Ryan L. Earley,Carlos D. Bustamante	11
12	Next-Generation Sequencing of Human Mitochondrial Reference Genomes Uncovers High Heteroplasmy Frequency 2012 ·PLoS Computational Biology ·Maria X. Sosa,I.K. Ashok Sivakumar,Samantha Maragh,Vamsi Veeramachaneni,Ramesh Hariharan,(unknown),Karin M. Fredrikson,Timothy T. Harkins,Jeffrey S. Lin,Andrew B. Feldman,Pramila Tata,Georg Ehret,Aravinda Chakravarti	56
13	Sequencing of Seven Haloarchaeal Genomes Reveals Patterns of Genomic Flux 2012 ·PLoS ONE ·(unknown),Morgan G. I. Langille,Aaron E. Darling,Elizabeth G. Wilbanks,(unknown),(unknown),(unknown),Clotilde Teiling,Timothy T. Harkins,Robert A. Edwards,Jonathan A. Eisen,Marc T. Facciotti	37
14	Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.) 2010 ·BMC Genomics ·Pablo F. Cavagnaro,Douglas Senalik,Luming Yang,Philipp W. Simon,Timothy T. Harkins,Chinnappa D. Kodira,Sanwen Huang,Yiqun Weng	286
15	Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species 2010 ·Genome Research ·Phillip A. Morin,Frederick I. Archer,Andrew D. Foote,Julia T. Vilstrup,Eric E. Allen,Paul R. Wade,(unknown),Kim M. Parsons,Robert L. Pitman,Lewyn Li,Pascal Bouffard,Sandra C. A. Nielsen,Morten Rasmussen,Eske Willerslev,M. Thomas P. Gilbert,Timothy T. Harkins	317
16	The Tasmanian Devil Transcriptome Reveals Schwann Cell Origins of a Clonally Transmissible Cancer 2009 ·Science ·Elizabeth P. Murchison,Cesar Tovar,Arthur Hsu,Hannah Bender,Pouya Kheradpour,Clare A. Rebbeck,David Obendorf,(unknown),Melanie Bahlo,Catherine A. Blizzard,Stephen Pyecroft,Alexandre Kreiss,Manolis Kellis,Alexander Stark,Timothy T. Harkins,Jennifer A. Marshall Graves,GM Woods,Gregory J. Hannon,Anthony T. Papenfuss	4
17	Major histocompatibility complex genotyping with massively parallel pyrosequencing 2009 ·Nature Medicine ·Roger W. Wiseman,Julie A. Karl,Benjamin N. Bimber,Claire E. O’Leary,Simon M. Lank,Jennifer J. Tuscher,Ann Detmer,Pascal Bouffard,(unknown),Cynthia Turcotte,(unknown),Chris Wright,Timothy T. Harkins,David H. O’Connor	118
18	Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing 2009 ·BMC Genomics ·Shrinivasrao P. Mane,Clive Evans,(unknown),Oswald Crasta,Otto Folkerts,Stephen Hutchison,Timothy T. Harkins,Danielle Thierry‐Mieg,Jean Thierry‐Mieg,Roderick V. Jensen	59
19	Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome 2008 ·BMC Genomics ·(unknown),Natasha Levenkova,William Chow,Pascal Bouffard,Keith A. Boroevich,James Knight,Thomas Jarvie,Krzysztof P. Lubieniecki,Brian Desany,Ben F. Koop,Timothy T. Harkins,William S. Davidson	66
20	Kinetic and Thermodynamic Analysis of Mutant Type II DNA Topoisomerases That Cannot Covalently Cleave DNA 1999 ·Journal of Biological Chemistry ·(unknown),Timothy T. Harkins,(unknown),Janet E. Lindsley	22

About Timothy T. Harkins

Timothy T. Harkins is a scholar working on Horticulture, Cancer Research and Ophthalmology, having authored 63 papers that have together received 3.5k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (17 papers), Cancer Genomics and Diagnostics (10 papers) and Genomics and Rare Diseases (6 papers). The work is most often cited by research in Horticulture (73 citations), Molecular Biology (1.9k citations) and Genetics (735 citations). Timothy T. Harkins has collaborated with scholars based in United States, Netherlands and Canada. Frequent co-authors include Charles B. Grissom, Janet E. Lindsley, Chinnappa D. Kodira, Pascal Bouffard, Clarence Lee, Philipp W. Simon, Dhruba J. SenGupta, Christopher Rosenthal, Douglas Senalik and Pablo F. Cavagnaro. Their work appears in journals such as Science, Proceedings of the National Academy of Sciences and Journal of the American Chemical Society.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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