Stephanie Kim

3.2k total citations · 1 hit paper
29 papers, 1.4k citations indexed

About

Stephanie Kim is a scholar working on Molecular Biology, Oncology and Pulmonary and Respiratory Medicine. According to data from OpenAlex, Stephanie Kim has authored 29 papers receiving a total of 1.4k indexed citations (citations by other indexed papers that have themselves been cited), including 22 papers in Molecular Biology, 6 papers in Oncology and 3 papers in Pulmonary and Respiratory Medicine. Recurrent topics in Stephanie Kim's work include Protein Structure and Dynamics (7 papers), Machine Learning in Bioinformatics (4 papers) and Epigenetics and DNA Methylation (4 papers). Stephanie Kim is often cited by papers focused on Protein Structure and Dynamics (7 papers), Machine Learning in Bioinformatics (4 papers) and Epigenetics and DNA Methylation (4 papers). Stephanie Kim collaborates with scholars based in United States, South Korea and Germany. Stephanie Kim's co-authors include Martin Steinegger, Johannes Söding, Michel van Kempen, Jeong-Jae Lee, Charlotte Tumescheit, Milot Mirdita, Cameron L. M. Gilchrist, Steffen Lindert, Justin T. Seffernick and Laura Bauer and has published in prestigious journals such as Science, JAMA and Nucleic Acids Research.

In The Last Decade

Stephanie Kim

28 papers receiving 1.3k citations

Hit Papers

align trajectories sort by overperformance

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Fast and accurate protein structure search with Foldseek

2023 956 citations Michel van Kempen, Stephanie Kim et al. Nature Biotechnology profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Stephanie Kim United States	13	914	191	135	134	114	29	1.4k
Bong-Hyun Kim United States	6	1.1k 1.2×	132 0.7×	181 1.3×	147 1.1×	249 2.2×	8	1.4k
Qingping Xu United States	20	1.1k 1.2×	105 0.5×	101 0.7×	291 2.2×	135 1.2×	38	1.4k
Kristoffer Brännström Sweden	23	809 0.9×	77 0.4×	190 1.4×	124 0.9×	79 0.7×	42	1.4k
Jeremiah D. Farelli United States	12	773 0.8×	164 0.9×	58 0.4×	328 2.4×	134 1.2×	20	999
Heather K. Lamb United Kingdom	26	1.1k 1.2×	98 0.5×	180 1.3×	243 1.8×	248 2.2×	62	1.5k
Andreas Bernsel Sweden	10	1.4k 1.6×	122 0.6×	136 1.0×	319 2.4×	68 0.6×	11	1.8k
Damien Lieberherr Switzerland	6	1.0k 1.1×	133 0.7×	345 2.6×	141 1.1×	37 0.3×	9	1.4k
Hye‐Jin Yoon South Korea	23	1.1k 1.2×	93 0.5×	425 3.1×	189 1.4×	143 1.3×	88	1.7k
Ye Gao China	25	952 1.0×	92 0.5×	106 0.8×	385 2.9×	139 1.2×	71	1.6k
Håkan Viklund Sweden	9	1.2k 1.3×	105 0.5×	152 1.1×	231 1.7×	61 0.5×	10	1.5k

Countries citing papers authored by Stephanie Kim

Since Specialization

Citations

This map shows the geographic impact of Stephanie Kim's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Stephanie Kim with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Stephanie Kim more than expected).

Fields of papers citing papers by Stephanie Kim

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Stephanie Kim. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Stephanie Kim. The network helps show where Stephanie Kim may publish in the future.

Co-authorship network of co-authors of Stephanie Kim

This figure shows the co-authorship network connecting the top 25 collaborators of Stephanie Kim. A scholar is included among the top collaborators of Stephanie Kim based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Stephanie Kim. Stephanie Kim is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Faure, Guilhem, Makoto Saito, Max E. Wilkinson, et al.. (2025). TIGR-Tas: A family of modular RNA-guided DNA-targeting systems in prokaryotes and their viruses. Science. 388(6746). eadv9789–eadv9789. 17 indexed citations

Kim, Stephanie, et al.. (2025). Targeting α-synuclein translation: Novel PROTEIMERs as 5’-UTR directed inhibitors. Journal of Alzheimer s Disease. 106(3). 1187–1197. 1 indexed citations

Lee, Jihyeon, Hyunbin Kim, Stephanie Kim, et al.. (2024). Discovery of highly active kynureninases for cancer immunotherapy through protein language model. Nucleic Acids Research. 53(1). 4 indexed citations

Harwell, Matthew C., et al.. (2024). The EPA Ecosystem Services Tool Selection Portal. Sustainability. 16(5). 1739–1739.

Kang, Hyun Ju, Donghyo Kim, Stephanie Kim, et al.. (2024). expHRD: an individualized, transcriptome-based prediction model for homologous recombination deficiency assessment in cancer. BMC Bioinformatics. 25(1). 236–236. 2 indexed citations

Kempen, Michel van, Stephanie Kim, Charlotte Tumescheit, et al.. (2023). Fast and accurate protein structure search with Foldseek. Nature Biotechnology. 42(2). 243–246. 956 indexed citations breakdown →

Bordin, Nicola, Ian Sillitoe, Clemens Rauer, et al.. (2023). AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms. Communications Biology. 6(1). 160–160. 44 indexed citations

Kim, Stephanie, Seung Cho Lee, Bumjin Lim, et al.. (2023). DNA methylation biomarkers distinguishing early-stage prostate cancer from benign prostatic hyperplasia. Prostate International. 11(2). 113–121. 12 indexed citations

Kim, Stephanie, et al.. (2023). The art of specimen orientation: Two‐dimensional maps for oropharynx squamous cell carcinoma. Head & Neck. 46(3). 702–707. 1 indexed citations

10.

Bordin, Nicola, Christian Dallago, Michael Heinzinger, et al.. (2022). Novel machine learning approaches revolutionize protein knowledge. Trends in Biochemical Sciences. 48(4). 345–359. 31 indexed citations

11.

Seffernick, Justin T., et al.. (2022). Prediction of Intrinsic Disorder Using Rosetta ResidueDisorder and AlphaFold2. The Journal of Physical Chemistry B. 126(42). 8439–8446. 8 indexed citations

12.

Kim, Stephanie, et al.. (2022). ‘Omics in environmental epidemiological studies of chemical exposures: A systematic evidence map. Environment International. 164. 107243–107243. 21 indexed citations

13.

Kim, Stephanie, et al.. (2022). Harmonization of transcriptomic and methylomic analysis in environmental epidemiology studies for potential application in chemical risk assessment. Environment International. 164. 107278–107278. 4 indexed citations

14.

Kim, Stephanie, Jing Cui, Shili Xu, et al.. (2020). Abstract 554: Histone deacetylase inhibition is synthetically lethal with arginine deprivation in pancreatic cancers with low argininosuccinate synthetase 1 expression. Cancer Research. 80(16_Supplement). 554–554. 1 indexed citations

15.

Kim, Stephanie, Shili Xu, Jing Cui, et al.. (2019). Histone deacetylase inhibition is synthetically lethal with arginine deprivation in pancreatic cancers with low argininosuccinate synthetase 1 expression. Theranostics. 10(2). 829–840. 25 indexed citations

16.

Kim, Stephanie, Melanie L. Aprahamian, & Steffen Lindert. (2019). Improving inverse docking target identification with Z‐score selection. Chemical Biology & Drug Design. 93(6). 1105–1116. 17 indexed citations

17.

Dann, Amanda M., et al.. (2018). Association of Hospital Length of Stay and Complications With Readmission After Open Pancreaticoduodenectomy. JAMA Surgery. 154(1). 88–88. 26 indexed citations

18.

Kim, Stephanie, Justin T. Seffernick, & Steffen Lindert. (2018). Accurately Predicting Disordered Regions of Proteins Using Rosetta ResidueDisorder Application. The Journal of Physical Chemistry B. 122(14). 3920–3930. 17 indexed citations

19.

Kim, Stephanie, Melissa Eliot, Devin C. Koestler, et al.. (2016). Enlarged Leukocyte Referent Libraries can Explain Additional Variance in Blood-Based Epigenome-Wide Association Studies. Epigenomics. 8(9). 1185–1192. 11 indexed citations

20.

Sherry, Christina L., Stephanie Kim, Ryan N. Dilger, et al.. (2010). Sickness behavior induced by endotoxin can be mitigated by the dietary soluble fiber, pectin, through up-regulation of IL-4 and Th2 polarization. Brain Behavior and Immunity. 24(4). 631–640. 77 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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