Johannes Söding
Impact in
- Molecular Biology top 0.1%
- RNA and protein synthesis mechanisms
- Genomics and Phylogenetic Studies
- Protein Structure and Dynamics
- Machine Learning in Bioinformatics
- RNA Research and Splicing
- Endocrinology top 0.2%
Papers in
-
- RNA and protein synthesis mechanisms 36
- Genomics and Phylogenetic Studies 33
- Protein Structure and Dynamics 23
- Machine Learning in Bioinformatics 17
- Genomics and Chromatin Dynamics 16
- RNA Research and Splicing 14
- Ecology 12
- Bacteriophages and microbial interactions 11
- Co-authors
- Martin Steinegger (15 shared papers)A. Biegert (13 shared papers)Andrei N. Lupas (18 shared papers)Michael Remmert (11 shared papers)Kevin J. Karplus (1 shared paper)Rodrigo Sanz López (1 shared paper)Weizhong Li (1 shared paper)Hamish McWilliam (1 shared paper)
- Journals
- Bioinformatics (17 papers)Nucleic Acids Research (14 papers)Molecular Cell (5 papers)Nature Methods (4 papers)PLoS ONE (4 papers)
- Partner nations
- GermanyUnited StatesSouth Korea
In The Last Decade
Johannes Söding
109 papers receiving 34.7k citations
Johannes Söding's Hit Papers
Peers
Comparison fields: 5 of 188
- Molecular Biology 22.8k
- Endocrinology 1.3k
- Ecology 5.4k
- Microbiology 1.0k
- Molecular Medicine 660
Countries citing papers authored by Johannes Söding
This map shows the geographic impact of Johannes Söding's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Johannes Söding with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Johannes Söding more than expected).
Fields of papers citing papers by Johannes Söding
This network shows the impact of papers produced by Johannes Söding. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Johannes Söding. The network helps show where Johannes Söding may publish in the future.
Co-authors
The 25 scholars most cited alongside Johannes Söding, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.
All Works
Showing the 20 most-cited of 112 papers — load more, or switch the sort, to bring in the rest.
| # | Work | ||
|---|---|---|---|
| 1 | Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega Hit paper breakdown → | 2011 | 11985 |
| 2 | The HHpred interactive server for protein homology detection and structure prediction Hit paper breakdown → | 2005 | 3002 |
| 3 | MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets Hit paper breakdown → | 2017 | 2660 |
| 4 | Protein homology detection by HMM–HMM comparison Hit paper breakdown → | 2004 | 2000 |
| 5 | A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core Hit paper breakdown → | 2017 | 1773 |
| 6 | HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment Hit paper breakdown → | 2011 | 1763 |
| 7 | Fast and accurate protein structure search with Foldseek Hit paper breakdown → | 2023 | 1233 |
| 8 | HH-suite3 for fast remote homology detection and deep protein annotation Hit paper breakdown → | 2019 | 749 |
| 9 | Clustering huge protein sequence sets in linear time Hit paper breakdown → | 2018 | 563 |
| 10 | Protein Sequence Analysis Using the MPI Bioinformatics Toolkit Hit paper breakdown → | 2020 | 526 |
| 11 | Uniclust databases of clustered and deeply annotated protein sequences and alignments Hit paper breakdown → | 2016 | 505 |
| 12 | MMseqs2 desktop and local web server app for fast, interactive sequence searches Hit paper breakdown → | 2019 | 397 |
| 13 | 2009 | 378 | |
| 14 | 2010 | 364 | |
| 15 | 2016 | 317 | |
| 16 | 2014 | 299 | |
| 17 | 2019 | 297 | |
| 18 | 2006 | 246 | |
| 19 | 2019 | 204 | |
| 20 | 2003 | 203 |
About Johannes Söding
Johannes Söding is a scholar working on Molecular Biology, Ecology, Atomic and Molecular Physics, and Optics, Spectroscopy and Genetics, having authored 112 papers that have together received 35.1k indexed citations. Recurring topics across this work include RNA and protein synthesis mechanisms (36 papers), Genomics and Phylogenetic Studies (33 papers), Protein Structure and Dynamics (23 papers), Machine Learning in Bioinformatics (17 papers), Genomics and Chromatin Dynamics (16 papers), RNA Research and Splicing (14 papers), Bacteriophages and microbial interactions (11 papers) and Cold Atom Physics and Bose-Einstein Condensates (10 papers). The work is most often cited by research in Molecular Biology (22.8k citations), Endocrinology (1.3k citations), Ecology (5.4k citations), Microbiology (1.0k citations) and Molecular Medicine (660 citations). Johannes Söding has collaborated with scholars based in Germany, United States and South Korea. Frequent co-authors include Martin Steinegger, A. Biegert, Andrei N. Lupas, Michael Remmert, Kevin J. Karplus, Rodrigo Sanz López, Weizhong Li, Hamish McWilliam, Julie Thompson and Fabian Sievers. Their work appears in journals such as Bioinformatics, Nucleic Acids Research, Molecular Cell, Nature Methods and PLoS ONE.
Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.