Darren A. Natale

41.2k total citations · 2 hit papers
41 papers, 5.8k citations indexed

About

Darren A. Natale is a scholar working on Molecular Biology, Genetics and Artificial Intelligence. According to data from OpenAlex, Darren A. Natale has authored 41 papers receiving a total of 5.8k indexed citations (citations by other indexed papers that have themselves been cited), including 39 papers in Molecular Biology, 7 papers in Genetics and 5 papers in Artificial Intelligence. Recurrent topics in Darren A. Natale's work include Genomics and Phylogenetic Studies (18 papers), Biomedical Text Mining and Ontologies (16 papers) and Machine Learning in Bioinformatics (10 papers). Darren A. Natale is often cited by papers focused on Genomics and Phylogenetic Studies (18 papers), Biomedical Text Mining and Ontologies (16 papers) and Machine Learning in Bioinformatics (10 papers). Darren A. Natale collaborates with scholars based in United States, China and United Kingdom. Darren A. Natale's co-authors include Eugene V. Koonin, Yuri I. Wolf, Raja Mazumder, Sona Vasudevan, Alexander V. Sverdlov, John D. Jackson, Aviva R. Jacobs, Dmitri M. Krylov, Natalie D. Fedorova and Sergei Mekhedov and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Journal of Biological Chemistry.

In The Last Decade

Darren A. Natale

41 papers receiving 5.7k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The COG database: an updated version includes eukaryotes

2003 3.6k citations Roman L. Tatusov, Natalie D. Fedorova et al. BMC Bioinformatics profile →
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

2004 794 citations Eugene V. Koonin, Natalie D. Fedorova et al. Genome biology profile →

Peers

Countries citing papers authored by Darren A. Natale

Since Specialization

Citations

This map shows the geographic impact of Darren A. Natale's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Darren A. Natale with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Darren A. Natale more than expected).

Fields of papers citing papers by Darren A. Natale

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Darren A. Natale. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Darren A. Natale. The network helps show where Darren A. Natale may publish in the future.

Co-authorship network of co-authors of Darren A. Natale

This figure shows the co-authorship network connecting the top 25 collaborators of Darren A. Natale. A scholar is included among the top collaborators of Darren A. Natale based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Darren A. Natale. Darren A. Natale is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model 2021 ·Briefings in Bioinformatics ·(unknown), (unknown), Amanda Bell, (unknown), Keith A. Crandall, (unknown), Robel Kahsay, Darren A. Natale, Lynn M. Schriml, (unknown), Raja Mazumder	10
2	Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources 2018 ·Scientific Reports ·Liang‐Chin Huang, Karen Ross, Timothy R. Baffi, Harold Drabkin, Krzysztof Kochut, Zheng Ruan, Peter D’Eustachio, Daniel McSkimming, Cecilia N. Arighi, Chuming Chen, Darren A. Natale, Cynthia L. Smith, Pascale Gaudet, Alexandra C. Newton, Cathy Wu, Natarajan Kannan	23
3	Tutorial on Protein Ontology Resources 2017 ·Methods in molecular biology ·Cecilia N. Arighi, Harold Drabkin, Karen Christie, Karen Ross, Darren A. Natale	3
4	The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology 2016 ·Journal of Biomedical Semantics ·Jingshan Huang, Karen Eilbeck, Barry Smith, Judith A. Blake, Dejing Dou, (unknown), Darren A. Natale, Alan Ruttenberg, Jun Huan, Michael T. Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, (unknown), Yongqun He, Shaojie Zhang, Xiaowei Wang, Zixing Liu, Glen M. Borchert, Ming Tan	7
5	OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data 2016 ·Journal of Biomedical Semantics ·Jingshan Huang, (unknown), (unknown), Dejing Dou, (unknown), Barry Smith, Judith A. Blake, Karen Eilbeck, Darren A. Natale, Yu Lin, Bin Wu, Nisansa de Silva, Xiaowei Wang, Zixing Liu, Glen M. Borchert, Ming Tan, Alan Ruttenberg	19
6	Knowledge Representation of Protein PTMs and Complexes in the Protein Ontology: Application to Multi-Faceted Disease Analysis 2014 ·Karen Ross, Catalina O. Tudor, Gang Li, (unknown), (unknown), Julie Cowart, Cecilia N. Arighi, Darren A. Natale, Cathy Wu	1
7	OMIT: Dynamic, Semi-Automated Ontology Development for the microRNA Domain 2014 ·PLoS ONE ·Jingshan Huang, Jiangbo Dang, Glen M. Borchert, Karen Eilbeck, He Zhang, (unknown), Weijian Jiang, (unknown), Judith A. Blake, Darren A. Natale, Ming Tan	19
8	Use of the Protein Ontology for Multi-Faceted Analysis of Biological Processes: A Case Study of the Spindle Checkpoint 2013 ·Frontiers in Genetics ·Karen Ross, Cecilia N. Arighi, Jia Ren, Darren A. Natale, Hongzhan Huang, Cathy Wu	4
9	Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation 2011 ·PLoS ONE ·Chuming Chen, Darren A. Natale, ROBERT FINN, Hongzhan Huang, Jian Zhang, Cathy Wu, Raja Mazumder	76
10	The Protein Ontology: a structured representation of protein forms and complexes 2010 ·Nucleic Acids Research ·Darren A. Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold Drabkin, Peter D’Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, (unknown), Barry Smith, Jian Zhang, Cathy Wu	88
11	Protein-Centric Data Integration for Functional Analysis of Comparative Proteomics Data 2010 ·Methods in molecular biology ·Peter B. McGarvey, Jian Zhang, Darren A. Natale, Cathy Wu, Hongzhan Huang	4
12	Structure-Guided Rule-Based Annotation of Protein Functional Sites in UniProt Knowledgebase 2010 ·Methods in molecular biology ·Sona Vasudevan, C R Vinayaka, Darren A. Natale, Hongzhan Huang, Robel Kahsay, Cathy Wu	5
13	Computational identification of strain-, species- and genus-specific proteins 2005 ·BMC Bioinformatics ·Raja Mazumder, Darren A. Natale, (unknown), Rathi D. Thiagarajan, Cathy Wu	13
14	A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes breakdown → 2004 ·Genome biology ·Eugene V. Koonin, Natalie D. Fedorova, John D. Jackson, Aviva R. Jacobs, Dmitri M. Krylov, Kira S. Makarova, Raja Mazumder, Sergei Mekhedov, A. N. NIKOL'SKAYA, (unknown), Igor B. Rogozin, (unknown), Alexander V. Sorokin, Alexander V. Sverdlov, Sona Vasudevan, Yuri I. Wolf, (unknown), Darren A. Natale	794
15	Evolution of Eukaryotic Gene Repertoire and Gene Structure: Discovering the Unexpected Dynamics of Genome Evolution 2003 ·Cold Spring Harbor Symposia on Quantitative Biology ·Igor B. Rogozin, Vladimir N. Babenko, Natalie D. Fedorova, John David Jackson, Aviva R. Jacobs, Dmitri M. Krylov, Kira S. Makarova, Raja Mazumder, (unknown), Boris Mirkin, A. N. NIKOL'SKAYA, (unknown), (unknown), Alexander V. Sorokin, Alexander V. Sverdlov, Sona Vasudevan, Yuri I. Wolf, (unknown), Darren A. Natale, Eugene V. Koonin	5
16	The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens 2002 ·Proceedings of the National Academy of Sciences ·Alexeï Slesarev, (unknown), Kira S. Makarova, Nikolai N. Polushin, (unknown), (unknown), Galina I. Belova, L. Aravind, Darren A. Natale, Igor B. Rogozin, Roman L. Tatusov, Yuri I. Wolf, Karl O. Stetter, Andrei Malykh, Eugene V. Koonin, Sergei A. Kozyavkin	219
17	Initiation of eukaryotic DNA replication: conservative or liberal? 2000 ·Journal of Cellular Physiology ·Joseph A. Bogan, Darren A. Natale, Melvin Depamphilis	72
18	Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs) 2000 ·Genome biology ·Darren A. Natale, Uma Shankavaram, Michael Y. Galperin, Yuri I. Wolf, L. Aravind, Eugene V. Koonin	129
19	Absence of an Unusual “Densely Methylated Island” at the Hamster dhfr ori-β 1997 ·Journal of Biological Chemistry ·Theo Rein, Darren A. Natale, Ulrike Gärtner, (unknown), Melvin L. DePamphilis, Haralabos Zorbas	20
20	Ease of DNA unwinding is a conserved property of yeast replication origins 1993 ·Nucleic Acids Research ·Darren A. Natale, Robert M. Umek, David Kowalski	105

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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