Tanya Berardini

22.1k total citations · 3 hit papers
36 papers, 4.9k citations indexed

About

Tanya Berardini is a scholar working on Molecular Biology, Artificial Intelligence and Plant Science. According to data from OpenAlex, Tanya Berardini has authored 36 papers receiving a total of 4.9k indexed citations (citations by other indexed papers that have themselves been cited), including 32 papers in Molecular Biology, 7 papers in Artificial Intelligence and 6 papers in Plant Science. Recurrent topics in Tanya Berardini's work include Biomedical Text Mining and Ontologies (17 papers), Bioinformatics and Genomic Networks (17 papers) and Genomics and Phylogenetic Studies (14 papers). Tanya Berardini is often cited by papers focused on Biomedical Text Mining and Ontologies (17 papers), Bioinformatics and Genomic Networks (17 papers) and Genomics and Phylogenetic Studies (14 papers). Tanya Berardini collaborates with scholars based in United States, United Kingdom and Switzerland. Tanya Berardini's co-authors include Eva Huala, Donghui Li, M. Garcia-Hernandez, Christopher Wilks, Leonore Reiser, David Swarbreck, Robert Müller, Rajkumar Sasidharan, Kate Dreher and Robert Müller and has published in prestigious journals such as Science, Proceedings of the National Academy of Sciences and Nucleic Acids Research.

In The Last Decade

Tanya Berardini

35 papers receiving 4.8k citations

Hit Papers

align trajectories sort by overperformance

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

2011 1.7k citations Philippe Lamesch, Tanya Berardini et al. Nucleic Acids Research profile →
The Arabidopsis Information Resource (TAIR): gene structure and function annotation

2007 774 citations David Swarbreck, Christopher Wilks et al. Nucleic Acids Research profile →
The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome

2015 747 citations Tanya Berardini, Leonore Reiser et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Tanya Berardini United States	21	3.6k	2.9k	427	186	182	36	4.9k
Eva Huala United States	24	4.6k 1.3×	4.2k 1.4×	648 1.5×	274 1.5×	165 0.9×	33	6.3k
Marie‐Laure Martin‐Magniette France	27	2.3k 0.6×	2.4k 0.8×	221 0.5×	106 0.6×	183 1.0×	63	3.8k
Wojciech M. Karłowski Poland	25	2.2k 0.6×	2.8k 0.9×	271 0.6×	131 0.7×	58 0.3×	78	3.7k
Pierre Rouzé Belgium	38	4.0k 1.1×	2.8k 0.9×	387 0.9×	110 0.6×	136 0.7×	76	5.5k
Christopher Wilks United States	11	2.4k 0.7×	1.7k 0.6×	336 0.8×	127 0.7×	49 0.3×	16	3.3k
Tatsuya Sakai Japan	40	4.2k 1.2×	4.7k 1.6×	517 1.2×	162 0.9×	39 0.2×	94	6.5k
Andrew Farmer United States	44	1.9k 0.5×	4.6k 1.6×	708 1.7×	408 2.2×	89 0.5×	109	5.8k
Lars Hennig Sweden	52	7.8k 2.2×	7.9k 2.7×	494 1.2×	274 1.5×	234 1.3×	116	10.5k
Jens Keilwagen Germany	26	1.7k 0.5×	1.3k 0.5×	573 1.3×	202 1.1×	99 0.5×	77	2.9k
Li‐Qing Chen United States	30	2.5k 0.7×	6.2k 2.1×	149 0.3×	172 0.9×	70 0.4×	60	7.3k

Countries citing papers authored by Tanya Berardini

Since Specialization

Citations

This map shows the geographic impact of Tanya Berardini's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tanya Berardini with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tanya Berardini more than expected).

Fields of papers citing papers by Tanya Berardini

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tanya Berardini. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tanya Berardini. The network helps show where Tanya Berardini may publish in the future.

Co-authorship network of co-authors of Tanya Berardini

This figure shows the co-authorship network connecting the top 25 collaborators of Tanya Berardini. A scholar is included among the top collaborators of Tanya Berardini based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Tanya Berardini. Tanya Berardini is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Reiser, Leonore, et al.. (2024). The Arabidopsis Information Resource in 2024. Genetics. 227(1). 45 indexed citations

Clarke, Jennifer, Laurel Cooper, Monica F. Poelchau, et al.. (2023). Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. Database. 2023. 6 indexed citations

Attrill, Helen, Pascale Gaudet, Rachael P. Huntley, et al.. (2019). Annotation of gene product function from high-throughput studies using the Gene Ontology. Database. 2019. 20 indexed citations

Reiser, Leonore, Tanya Berardini, Donghui Li, et al.. (2016). Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model. Database. 2016. baw018–baw018. 32 indexed citations

Berardini, Tanya, et al.. (2016). Preliminary Study on the Impact of Literature Curation in a Model Organism Database on Article Citation Rates. D-Lib Magazine. 22(9/10).

Berardini, Tanya, Rebecca E. Foulger, David P. Hill, et al.. (2014). TermGenie – a web-application for pattern-based ontology class generation. Journal of Biomedical Semantics. 5(1). 48–48. 27 indexed citations

Hill, David P., Nico Adams, Colin Batchelor, et al.. (2013). Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology. BMC Genomics. 14(1). 513–513. 40 indexed citations

Roncaglia, Paola, Maryann E. Martone, David P. Hill, et al.. (2013). The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments. Journal of Biomedical Semantics. 4(1). 20–20. 36 indexed citations

Li, Donghui, Kate Dreher, Emma M. Knee, et al.. (2013). Arabidopsis Database and Stock Resources. Methods in molecular biology. 1062. 65–96. 7 indexed citations

10.

Berardini, Tanya, et al.. (2012). Assessment of community-submitted ontology annotations from a novel database-journal partnership. Database. 2012(0). bas030–bas030. 14 indexed citations

11.

Burge, Sarah, Teresa K. Attwood, Alex Bateman, et al.. (2012). Biocurators and Biocuration: surveying the 21st century challenges. Database. 2012(0). bar059–bar059. 49 indexed citations

12.

Wei, Chih-Hsuan, Bethany Harris, Donghui Li, et al.. (2012). Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts. Database. 2012(0). bas041–bas041. 74 indexed citations

13.

Auken, Kimberly Van, Petra Fey, Tanya Berardini, et al.. (2012). Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR. Database. 2012(0). bas040–bas040. 28 indexed citations

14.

Mungall, Chris, Michael Bada, Tanya Berardini, et al.. (2010). Cross-product extensions of the Gene Ontology. Journal of Biomedical Informatics. 44(1). 80–86. 89 indexed citations

15.

Hill, David P., et al.. (2009). Representing ontogeny through ontology: A developmental biologist's guide to the gene ontology. Molecular Reproduction and Development. 77(4). 314–329. 15 indexed citations

16.

Swarbreck, David, Christopher Wilks, P. Lamesch, et al.. (2007). The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Research. 36(Database). D1009–D1014. 774 indexed citations breakdown →

17.

Aukerman, Milo J., et al.. (2003). HASTY, theArabidopsisortholog of exportin 5/MSN5, regulates phase change and morphogenesis. Development. 130(8). 1493–1504. 225 indexed citations

18.

Pezza, John A., Kyung H. Choi, Tanya Berardini, et al.. (2003). Spatial Clustering of Isozyme-specific Residues Reveals Unlikely Determinants of Isozyme Specificity in Fructose-1,6-bisphosphate Aldolase. Journal of Biological Chemistry. 278(19). 17307–17313. 26 indexed citations

19.

Berardini, Tanya, et al.. (1999). Identification of conserved promoter elements for aldB and isozyme specific residues in aldolase B. Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology. 122(1). 53–61. 7 indexed citations

20.

Berardini, Tanya, et al.. (1997). Identification of Neuronal Isozyme Specific Residues by Comparison of Goldfish Aldolase C to Other Aldolases. Comparative Biochemistry and Physiology Part A Physiology. 117(4). 471–476. 16 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact