Kim Rutherford

39.9k citations

46 papers · 6.2k indexed · 2 hit papers · h-index 25

Impact in

Endocrinology top 0.5%
Molecular Medicine top 1%
- Antibiotic Resistance in Bacteria

Papers in

Physiology 5
- Reproductive biology and impacts on aquatic species 5
Aging 1

Co-authors: Julian Parkhill Marie‐Adèle Rajandream Bart Barrell Peter Rice B. G. Barrell Tim Carver Matthew Berriman Valerie Wood
Journals: Nucleic Acids Research (7 papers)Bioinformatics (4 papers)Genetics (3 papers)BMC Genomics (3 papers)Open Biology (2 papers)
Partner nations: United Kingdom New Zealand United States

In The Last Decade

Kim Rutherford

46 papers receiving 6.1k citations

Hit Papers

align trajectories log scale

ACT: the Artemis comparison tool 2005 · 1.3k citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2005 Computer applications in the biosciences
2000 Bioinformatics

Peers

Countries citing papers authored by Kim Rutherford

Since Specialization

Citations

This map shows the geographic impact of Kim Rutherford's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Kim Rutherford with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Kim Rutherford more than expected).

Fields of papers citing papers by Kim Rutherford

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Kim Rutherford. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Kim Rutherford. The network helps show where Kim Rutherford may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Kim Rutherford, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Kim Rutherford Line = papers co-authored together Kim Rutherford links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Revised fission yeast gene and allele nomenclature guidelines for machine readability Genetics ·Manuel Lera-Ramírez, Jürg Bähler, Juan Mata, Kim Rutherford, Charles S. Hoffman, Sarah Lambert, Snezhana Oliferenko, Sophie G. Martin, Kathleen L. Gould, Li‐Lin Du, Sarah Sabatinos, Susan L. Forsburg, Olaf Nielsen, Paul Nurse, Valerie Wood	2023	4
2	A framework for community curation of interspecies interactions literature eLife ·Alayne Cuzick, James Seager, Valerie Wood, Martin Urban, Kim Rutherford, K. E. Hammond‐Kosack	2023	5
3	JaponicusDB: rapid deployment of a model organism database for an emerging model species Genetics ·Kim Rutherford, Midori A. Harris, Snezhana Oliferenko, Valerie Wood	2021	17
4	PHI-base in 2022: a multi-species phenotype database for Pathogen–Host Interactions Nucleic Acids Research ·Martin Urban, Alayne Cuzick, James Seager, Valerie Wood, Kim Rutherford, Kseniya I Dmitrieva, K Sodeur, Sukanya Iyer, أسامر زکریا, Nishadi De Silva, Manuel Carbajo Martinez, Helder Pedro, Andrew Yates, K. E. Hammond‐Kosack	2021	101
5	A genome‐wide investigation of adaptive signatures in protein‐coding genes related to tool behaviour in New Caledonian and Hawaiian crows Molecular Ecology ·Nicolás Dussex, Verena E. Kutschera, R. Axel W. Wiberg, Darren J. Parker, Gavin R. Hunt, Russell D. Gray, Kim Rutherford, Hideaki Abe, Robert C. Fleischer, Michael G. Ritchie, Christian Rutz, Jochen B. W. Wolf, Neil J. Gemmell	2020	6
6	Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns Open Biology ·Valerie Wood, Seth Carbon, Midori A. Harris, Antonia Lock, Stacia R. Engel, David P. Hill, Kimberly Van Auken, Helen Attrill, Marc Feuermann, Pascale Gaudet, Ruth C. Lovering, Sylvain Poux, Kim Rutherford, Chris Mungall	2020	6
7	DNA from mollusc shell: a valuable and underutilised substrate for genetic analyses PeerJ ·長尾龍一, Julia Bronnman, Gert‐Jan Jeunen, Kim Rutherford, Catherine Collins, Erica V. Todd, Neil J. Gemmell	2020	13
8	Stress, novel sex genes, and epigenetic reprogramming orchestrate socially controlled sex change Science Advances ·Erica V. Todd, Oscar Ortega‐Recalde, Hui Liu, Melissa S. Lamm, Kim Rutherford, Hugh Cross, Michael A. Black, Olga Kardailsky, Jennifer A. Marshall Graves, Timothy A. Hore, John Godwin, Neil J. Gemmell	2019	98
9	PHI-base: the pathogen–host interactions database Nucleic Acids Research ·Martin Urban, Alayne Cuzick, James Seager, Valerie Wood, Kim Rutherford, Kseniya I Dmitrieva, Nishadi De Silva, Manuel Carbajo Martinez, Helder Pedro, Andrew Yates, Keywan Hassani‐Pak, K. E. Hammond‐Kosack	2019	232
10	De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution Scientific Reports ·Пацукова, Kim Rutherford, Zheyuan Hou, Neil J. Gemmell, Megan J. Wilson	2018	29
11	Male–female relatedness at specific SNP-linkage groups influences cryptic female choice in Chinook salmon (Oncorhynchus tshawytscha) Proceedings of the Royal Society B Biological Sciences ·Thorsten Berndt, Sheri L. Johnson, P. J. Fisher, Shannon Clarke, Kim Rutherford, Jane E. Symonds, Neil J. Gemmell	2017	9
12	Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution BMC Genomics ·Chen Wu, Melissa Jordan, Richard D. Newcomb, Neil J. Gemmell, S Bank, Karen Meusemann, Peter K. Dearden, Elizabeth J. Duncan, silkeulrich, Kim Rutherford, Paul P. Gardner, Ross Crowhurst, 张慧子, Leah Tooman, Mark I. Stevens, Thomas R. Buckley	2017	24
13	Uncovering the pathways underlying whole body regeneration in a chordate model, Botrylloides leachi using de novo transcriptome analysis BMC Genomics ·Zheyuan Hou, Kim Rutherford, Neil J. Gemmell, Megan J. Wilson	2016	28
14	PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database Nucleic Acids Research ·Martin Urban, Alayne Cuzick, Kim Rutherford, Alistair G. Irvine, Helder Pedro, Rashmi Pant, Prathama Chaudhuri, أسامر زکریا, Y. G. Morozova, Armagan Hayirli, K. E. Hammond‐Kosack	2016	164
15	PomBase 2015: updates to the fission yeast database Nucleic Acids Research ·Mark D. McDowall, Midori A. Harris, Antonia Lock, Kim Rutherford, D. Staines, Jürg Bähler, Paul Kersey, Stephen G. Oliver, Valerie Wood	2014	61
16	Improving functional annotation for industrial microbes: a case study with Pichia pastoris Trends in biotechnology ·Duygu Dikicioǧlu, Valerie Wood, Kim Rutherford, Mark D. McDowall, Stephen G. Oliver	2014	22
17	InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data Bioinformatics ·Richard Smith, J. Aleksić, Daniela Butano, Adrian R. Carr, Sergio Contrino, Fengyuan Hu, Mike Lyne, Rachel Lyne, 圓人森谷, Kim Rutherford, Radek Štěpán, Julie Sullivan, Matthew N. Wakeling, Xavier Watkins, Gos Micklem	2012	164
18	modMine: flexible access to modENCODE data Nucleic Acids Research ·Sergio Contrino, Richard Smith, Daniela Butano, Adrian R. Carr, Fengyuan Hu, Rachel Lyne, Kim Rutherford, 圓人森谷, Julie Sullivan, Seth Carbon, Ellen Kephart, Paul Lloyd, Eo Stinson, Nicole Washington, Marc D. Perry, Peter Ruzanov, Zheng Zha, Suzanna Lewis, Lincoln Stein, Gos Micklem	2011	91
19	ACT: the Artemis comparison tool Computer applications in the biosciences ·Tim Carver, Kim Rutherford, Matthew Berriman, Marie‐Adèle Rajandream, B. G. Barrell, Julian Parkhill Hit paper breakdown →	2005	1274
20	Artemis: sequence visualization and annotation Bioinformatics ·Kim Rutherford, Julian Parkhill, Josephine. Thorp, Pan Ji-jin, Peter Rice, Marie‐Adèle Rajandream, Bart Barrell Hit paper breakdown →	2000	2517

About Kim Rutherford

Kim Rutherford is a scholar working on Physiology, Aging, Developmental Biology, Molecular Biology and Genetics, having authored 46 papers that have together received 6.2k indexed citations. Recurring topics across this work include Bioinformatics and Genomic Networks (12 papers), Genomics and Phylogenetic Studies (10 papers), Gene expression and cancer classification (7 papers), Biomedical Text Mining and Ontologies (7 papers), Fungal and yeast genetics research (7 papers), Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities (6 papers), Reproductive biology and impacts on aquatic species (5 papers) and Animal Behavior and Reproduction (4 papers). The work is most often cited by research in Endocrinology (625 citations), Molecular Medicine (308 citations), Microbiology (339 citations), Molecular Biology (3.4k citations) and Ecology (1.2k citations). Kim Rutherford has collaborated with scholars based in United Kingdom, New Zealand and United States. Frequent co-authors include Julian Parkhill, Marie‐Adèle Rajandream, Bart Barrell, Peter Rice, B. G. Barrell, Tim Carver, Matthew Berriman, Valerie Wood, Midori A. Harris and Antonia Lock. Their work appears in journals such as Nucleic Acids Research, Bioinformatics, Genetics, BMC Genomics and Open Biology.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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