Nad’a Špačková

3.0k citations

38 papers · 2.4k indexed · h-index 25

Impact in

Molecular Biology top 5%
- DNA and Nucleic Acid Chemistry
- RNA and protein synthesis mechanisms
- Advanced biosensing and bioanalysis techniques
- RNA modifications and cancer
- RNA Interference and Gene Delivery
- Protein Structure and Dynamics
- RNA Research and Splicing
Physical and Theoretical Chemistry top 5%

Papers in

Molecular Biology 37
- DNA and Nucleic Acid Chemistry 28
- RNA and protein synthesis mechanisms 24
- Advanced biosensing and bioanalysis techniques 12
- RNA modifications and cancer 9
- RNA Interference and Gene Delivery 8
- Protein Structure and Dynamics 6
- RNA Research and Splicing 4
- DNA Repair Mechanisms 2
Hepatology 2

Co-authors: Jiřı́ Šponer Imre Berger Thomas E. Cheatham Jaroslav Koča Richard Štefl Jerzy Leszczyński Neocles B. Leontis Filip Lankaš
Journals: Journal of the American Chemical Society (8 papers)The Journal of Physical Chemistry B (5 papers)Biophysical Journal (5 papers)Journal of Molecular Biology (3 papers)Nucleic Acids Research (3 papers)
Partner nations: Czechia United States Switzerland

In The Last Decade

Nad’a Špačková

38 papers receiving 2.4k citations

Peers

Countries citing papers authored by Nad’a Špačková

Since Specialization

Citations

This map shows the geographic impact of Nad’a Špačková's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Nad’a Špačková with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Nad’a Špačková more than expected).

Fields of papers citing papers by Nad’a Špačková

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Nad’a Špačková. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Nad’a Špačková. The network helps show where Nad’a Špačková may publish in the future.

Co-authors

The 25 scholars most cited alongside Nad’a Špačková, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Nad’a Špačková Line = papers co-authored together Nad’a Špačková links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Protein environment affects the water–tryptophan binding mode. MD, QM/MM, and NMR studies of engrailed homeodomain mutants Physical Chemistry Chemical Physics ·Nad’a Špačková, Sun Daxi, 森田ひとみ, Warih Arbi Hernowo, Jaroslav V. Burda, Pavel Srb, 幸夫東田, Lukáš Žı́dek, Jiřı́ Kozelka	2018	3
2	DNA mutation motifs in the genes associated with inherited diseases PLoS ONE ·Michal Růžička, Petr Kulhánek, Lenka Radová, Wu Weifang, Nad’a Špačková, Lenka Fajkusová, Kamila Réblová	2017	21
3	μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA Nucleic Acids Research ·Marco Pasi, John H. Maddocks, David L. Beveridge, Thomas C. Bishop, David A. Case, Thomas E. Cheatham, Pablo D. Dans, B. Jayaram, Filip Lankaš, Charles A. Laughton, Jonathan S. Mitchell, Roman Osman, Modesto Orozco, Alberto Pérez, Daiva Petkevičiūtė-Gerlach, Nad’a Špačková, Jiřı́ Šponer, K. Zakrzewska, Richard Lavery	2014	166
4	Mechanical Model of DNA Allostery The Journal of Physical Chemistry Letters ·Tomáš Dršata, Marie Zgarbová, Nad’a Špačková, Petr Jurečka, Jiřı́ Šponer, Filip Lankaš	2014	22
5	Revisiting the planarity of nucleic acid bases: Pyramidilization at glycosidic nitrogen in purine bases is modulated by orientation of glycosidic torsion Nucleic Acids Research ·Vladimı́r Sychrovský, Silvie Foldynová-Trantírková, Nad’a Špačková, Koen Robeyns, Luc Van Meervelt, Wulf Blankenfeldt, Kai Zhao, Jiřı́ Šponer, Lukáš Trantı́rek	2009	21
6	A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA Nucleic Acids Research ·Richard Lavery, K. Zakrzewska, David L. Beveridge, Thomas C. Bishop, David A. Case, Thomas E. Cheatham, Surjit B. Dixit, B. Jayaram, Filip Lankaš, Charles A. Laughton, John H. Maddocks, Ibragimova Maftuna Lutfulla qizi, Roman Osman, Modesto Orozco, Alberto Pérez, Tanya Singh, Nad’a Špačková, Jiřı́ Šponer	2009	258
7	Impact of an extruded nucleotide on cleavage activity and dynamic catalytic core conformation of the hepatitis delta virus ribozyme Biopolymers ·Jana Sefcikova, Eduarda Theisen Vogt, Nad’a Špačková, Jiřı́ Šponer, Nils G. Walter	2007	21
8	Molecular dynamics simulations and their application to four-stranded DNA Methods ·Jiřı́ Šponer, Nad’a Špačková	2007	85
9	Molecular dynamics simulations of RNA: An in silico single molecule approach Biopolymers ·Arturo Mena-Lorca, Nad’a Špačková, Jiřı́ Šponer, Nils G. Walter	2006	116
10	Structural Dynamics of Precursor and Product of the RNA Enzyme from the Hepatitis Delta Virus as Revealed by Molecular Dynamics Simulations Journal of Molecular Biology ·Eduarda Theisen Vogt, Jana Sefcikova, Nad’a Špačková, Jiřı́ Šponer, Nils G. Walter	2005	52
11	Molecular Dynamics Simulations of Guanine Quadruplex Loops: Advances and Force Field Limitations Biophysical Journal ·Eva Fadrná, Nad’a Špačková, Richard Štefl, Jaroslav Koča, Thomas E. Cheatham, Jiřı́ Šponer	2004	107
12	Long-Residency Hydration, Cation Binding, and Dynamics of Loop E/Helix IV rRNA-L25 Protein Complex Biophysical Journal ·Kamila Réblová, Nad’a Špačková, Jaroslav Koča, Neocles B. Leontis, Jiřı́ Šponer	2004	38
13	Ribosomal RNA Kink-turn Motif—A Flexible Molecular Hinge Journal of Biomolecular Structure and Dynamics ·Filip Rázga, Nad’a Špačková, Kamila Réblová, Jaroslav Koča, Neocles B. Leontis, Jiřı́ Šponer	2004	39
14	Unique Tertiary and Neighbor Interactions Determine Conservation Patterns of Cis Watson–Crick A/G Base-pairs Journal of Molecular Biology ·Jiřı́ Šponer, Ali H. Mokdad, Sigalit Ben-Shlomo, Sigalit Ben-Shlomo, Nad’a Špačková, Jerzy Leszczyński, Neocles B. Leontis	2003	62
15	Formation Pathways of a Guanine-Quadruplex DNA Revealed by Molecular Dynamics and Thermodynamic Analysis of the Substates Biophysical Journal ·Richard Štefl, Thomas E. Cheatham, Nad’a Špačková, Eva Fadrná, Imre Berger, Jaroslav Koča, Jiřı́ Šponer	2003	110
16	Non-Watson-Crick Basepairing and Hydration in RNA Motifs: Molecular Dynamics of 5S rRNA Loop E Biophysical Journal ·Kamila Réblová, Nad’a Špačková, Richard Štefl, David Barrett, Jaroslav Koča, Neocles B. Leontis, Jiřı́ Šponer	2003	94
17	Molecular Dynamics of DNA Quadruplex Molecules Containing Inosine, 6-Thioguanine and 6-Thiopurine Biophysical Journal ·Richard Štefl, Nad’a Špačková, Imre Berger, Jaroslav Koča, Jiřı́ Šponer	2001	47
18	Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding 1 1Edited by J. Doudna Journal of Molecular Biology ·David Barrett, Nad’a Špačková, Richard Štefl, Jiřı́ Šponer, Neocles B. Leontis	2001	65
19	Aromatic Base Stacking in DNA: Fromab initioCalculations to Molecular Dynamics Simulations Journal of Biomolecular Structure and Dynamics ·Jiřı́ Šponer, Imre Berger, Nad’a Špačková, Jerzy Leszczyński, Pavel Hobza	2000	23
20	Nanosecond Molecular Dynamics of Zipper-like DNA Duplex Structures Containing Sheared G·A Mismatch Pairs Journal of the American Chemical Society ·Nad’a Špačková, Imre Berger, Jiřı́ Šponer	2000	40

About Nad’a Špačková

Nad’a Špačková is a scholar working on Molecular Biology, Hepatology, Physical and Theoretical Chemistry, Biophysics and Insect Science, having authored 38 papers that have together received 2.4k indexed citations. Recurring topics across this work include DNA and Nucleic Acid Chemistry (28 papers), RNA and protein synthesis mechanisms (24 papers), Advanced biosensing and bioanalysis techniques (12 papers), RNA modifications and cancer (9 papers), RNA Interference and Gene Delivery (8 papers), Protein Structure and Dynamics (6 papers), RNA Research and Splicing (4 papers) and DNA Repair Mechanisms (2 papers). The work is most often cited by research in Molecular Biology (2.3k citations), Physical and Theoretical Chemistry (156 citations), Ecology (279 citations), Spectroscopy (108 citations) and Hepatology (46 citations). Nad’a Špačková has collaborated with scholars based in Czechia, United States and Switzerland. Frequent co-authors include Jiřı́ Šponer, Imre Berger, Thomas E. Cheatham, Jaroslav Koča, Richard Štefl, Jerzy Leszczyński, Neocles B. Leontis, Filip Lankaš, Judit E. Šponer and Modesto Orozco. Their work appears in journals such as Journal of the American Chemical Society, The Journal of Physical Chemistry B, Biophysical Journal, Journal of Molecular Biology and Nucleic Acids Research.

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