Jaroslav Koča

11.2k total citations · 2 hit papers
202 papers, 7.4k citations indexed

About

Jaroslav Koča is a scholar working on Molecular Biology, Materials Chemistry and Organic Chemistry. According to data from OpenAlex, Jaroslav Koča has authored 202 papers receiving a total of 7.4k indexed citations (citations by other indexed papers that have themselves been cited), including 122 papers in Molecular Biology, 45 papers in Materials Chemistry and 44 papers in Organic Chemistry. Recurrent topics in Jaroslav Koča's work include Protein Structure and Dynamics (50 papers), Enzyme Structure and Function (34 papers) and Glycosylation and Glycoproteins Research (30 papers). Jaroslav Koča is often cited by papers focused on Protein Structure and Dynamics (50 papers), Enzyme Structure and Function (34 papers) and Glycosylation and Glycoproteins Research (30 papers). Jaroslav Koča collaborates with scholars based in Czechia, United States and Slovakia. Jaroslav Koča's co-authors include Michal Otyepka, Radka Svobodová Vařeková, Jiřı́ Šponer, Anne Imberty, David Sehnal, Jiřı́ Damborský, Karel Berka, Pavel Banáš, Zdeněk Křı́ž and Martin Petřek and has published in prestigious journals such as Journal of the American Chemical Society, Nucleic Acids Research and Journal of Biological Chemistry.

In The Last Decade

Jaroslav Koča

197 papers receiving 7.3k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

2021 661 citations David Sehnal, Radka Svobodová Vařeková et al. Nucleic Acids Research profile →
Structures and mechanisms of glycosyltransferases

2005 547 citations Christelle Breton, Jaroslav Koča et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Jaroslav Koča Czechia	45	5.2k	1.1k	1.1k	701	620	202	7.4k
Jens Erik Nielsen Ireland	31	6.9k 1.3×	1.6k 1.5×	713 0.7×	941 1.3×	394 0.6×	62	9.6k
Daniel R. Roe United States	20	5.4k 1.0×	1.1k 1.0×	766 0.7×	1.1k 1.5×	559 0.9×	38	7.7k
Kevin Hauser United States	9	5.9k 1.1×	1.1k 1.0×	771 0.7×	1.2k 1.8×	477 0.8×	13	8.6k
Lauren Wickstrom United States	17	6.3k 1.2×	1.3k 1.2×	817 0.7×	1.3k 1.8×	617 1.0×	23	8.8k
Pär Bjelkmar Sweden	11	4.5k 0.9×	1.2k 1.1×	777 0.7×	652 0.9×	530 0.9×	18	7.6k
Per Larsson Sweden	21	4.8k 0.9×	1.5k 1.4×	973 0.9×	821 1.2×	745 1.2×	42	8.6k
Peter M. Kasson United States	27	4.7k 0.9×	1.3k 1.1×	696 0.6×	605 0.9×	551 0.9×	81	8.0k
Peter J. Tonge United States	52	5.2k 1.0×	1.1k 0.9×	2.1k 1.9×	1.2k 1.7×	302 0.5×	227	8.6k
Koushik Kasavajhala United States	7	6.7k 1.3×	1.3k 1.2×	900 0.8×	1.4k 2.0×	582 0.9×	9	9.4k
Elizabeth Hatcher United States	17	4.6k 0.9×	1.3k 1.2×	1.2k 1.1×	822 1.2×	609 1.0×	20	8.0k

Countries citing papers authored by Jaroslav Koča

Since Specialization

Citations

This map shows the geographic impact of Jaroslav Koča's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jaroslav Koča with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jaroslav Koča more than expected).

Fields of papers citing papers by Jaroslav Koča

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jaroslav Koča. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jaroslav Koča. The network helps show where Jaroslav Koča may publish in the future.

Co-authorship network of co-authors of Jaroslav Koča

This figure shows the co-authorship network connecting the top 25 collaborators of Jaroslav Koča. A scholar is included among the top collaborators of Jaroslav Koča based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jaroslav Koča. Jaroslav Koča is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Tvaroška, Igor, et al.. (2021). The catalytic reaction mechanism of tyrosylprotein sulfotransferase-1. Physical Chemistry Chemical Physics. 23(41). 23850–23860. 3 indexed citations

Janoš, Pavel, Igor Tvaroška, Christoph Dellago, & Jaroslav Koča. (2020). Catalytic Mechanism of Processive GlfT2: Transition Path Sampling Investigation of Substrate Translocation. ACS Omega. 5(34). 21374–21384. 6 indexed citations

Tvaroška, Igor, Chandrabose Selvaraj, & Jaroslav Koča. (2020). Selectins—The Two Dr. Jekyll and Mr. Hyde Faces of Adhesion Molecules—A Review. Molecules. 25(12). 2835–2835. 60 indexed citations

Janoš, Pavel, Stanislav Kozmon, Igor Tvaroška, & Jaroslav Koča. (2018). How Mycobacterium tuberculosis Galactofuranosyl Transferase 2 (GlfT2) Generates Alternating β‐(1–6) and β‐(1–5) Linkages: A QM/MM Molecular Dynamics Study of the Chemical Steps. Chemistry - A European Journal. 24(27). 7051–7059. 9 indexed citations

Vařeková, Radka Svobodová, et al.. (2018). Secondary Structure Elements - Annotations and Schematic 2D Visualizations Stable for Individual Protein Families. Biophysical Journal. 114(3). 46a–47a. 1 indexed citations

Pravda, Lukáš, David Sehnal, Karel Berka, et al.. (2018). Channelsdb and Moleonline - Database and Tool for Analysis of Biomacromolecular Tunnels and Pores. Biophysical Journal. 114(3). 342a–343a. 1 indexed citations

Houser, Josef, Stanislav Kozmon, Sushil K. Mishra, et al.. (2017). Influence of Trp flipping on carbohydrate binding in lectins. An example on Aleuria aurantia lectin AAL. PLoS ONE. 12(12). e0189375–e0189375. 11 indexed citations

Vařeková, Radka Svobodová, et al.. (2017). Quo Vadis, Biomacromolecular Structure Quality. Biophysical Journal. 112(3). 346a–347a. 3 indexed citations

Sehnal, David, Radka Svobodová Vařeková, Lukáš Pravda, et al.. (2014). ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank. Nucleic Acids Research. 43(D1). D369–D375. 16 indexed citations

10.

Sehnal, David, Radka Svobodová Vařeková, Karel Berka, et al.. (2013). MOLE 2.0: advanced approach for analysis of biomacromolecular channels. Journal of Cheminformatics. 5(1). 39–39. 259 indexed citations

11.

Kozmon, Stanislav, et al.. (2011). Three‐Dimensional Potential Energy Surface of Selected Carbohydrates’ CH/π Dispersion Interactions Calculated by High‐Level Quantum Mechanical Methods. Chemistry - A European Journal. 17(20). 5680–5690. 30 indexed citations

12.

Křı́ž, Zdeněk, et al.. (2010). Recognition of selected monosaccharides by Pseudomonas aeruginosa Lectin II analyzed by molecular dynamics and free energy calculations. Carbohydrate Research. 345(10). 1432–1441. 17 indexed citations

13.

Rázga, Filip, Martin Zacharias, Kamila Réblová, Jaroslav Koča, & Jiřı́ Šponer. (2006). RNA Kink-Turns as Molecular Elbows: Hydration, Cation Binding, and Large-Scale Dynamics. Structure. 14(5). 825–835. 49 indexed citations

14.

Imberty, Anne, Michaela Wimmerová, Jaroslav Koča, & Christelle Breton. (2006). Molecular Modeling of Glycosyltransferases. Humana Press eBooks. 347. 145–156. 8 indexed citations

15.

Otyepka, Michal, et al.. (2005). The mechanism of inhibition of the cyclin‐dependent kinase‐2 as revealed by the molecular dynamics study on the complex CDK2 with the peptide substrate HHASPRK. Protein Science. 14(2). 445–451. 31 indexed citations

16.

Breton, Christelle, et al.. (2005). REVIEW Structures and mechanisms of glycosyltransferases.

17.

Kutý, Michal, Jiřı́ Damborský, Martin Prokop, & Jaroslav Koča. (1998). A molecular modelling study of the catalytic mechanism ofhaloalkane dehalogenase: 2. Quantum chemical study of completereaction mechanism.. Journal of Chemical Information and Computer Sciences.

18.

Fadrná, Eva & Jaroslav Koča. (1996). CICADA Interface with AMBER. An Application on Oligonucleotides and their Fragments. Journal of Biomolecular Structure and Dynamics. 14(1). 137–152. 7 indexed citations

19.

Matyska, Luděk & Jaroslav Koča. (1991). MAPOS: a computer program for organic synthesis design based on synthon model of organic chemistry. Journal of Chemical Information and Computer Sciences. 31(3). 380–386. 6 indexed citations

20.

Koča, Jaroslav, et al.. (1986). A metric for graphs. Časopis pro pěstování matematiky. 111(4). 431–433. 17 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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