Julian Parkhill

148.0k citations

566 papers · 56.2k indexed · 26 hit papers · h-index 116

Molecular Biology top 0.05%
Infectious Diseases top 0.01%
Epidemiology top 0.05%
Food Science top 0.01%
Ecology top 0.05%

Co-authors: Stephen D. Bentley Simon R. Harris Matthew T. G. Holden Alan W. Walker Jacqueline A. Keane Sharon J. Peacock Andrew J. Page Marie‐Adèle Rajandream
Topics: Antimicrobial Resistance in Staphylococcus (100 papers)Genomics and Phylogenetic Studies (96 papers)Antibiotic Resistance in Bacteria (78 papers)
Cited by: Endocrinology Molecular Medicine Microbiology
Journals: Nature Science New England Journal of Medicine
Partner nations: United Kingdom United States Australia

In The Last Decade

Julian Parkhill

559 papers receiving 55.5k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Roary: rapid large-scale prokaryote pan genome analysis

2015 3.6k citations Andrew J. Page, Martin Hunt et al. profile →
Artemis: sequence visualization and annotation

2000 2.5k citations Julian Parkhill, Bart Barrell et al. profile →
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

2014 2.2k citations Susannah J. Salter, Paul Turner et al. profile →
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

2014 1.6k citations Nicholas J. Croucher, Andrew J. Page et al. Nucleic Acids Research profile →
ACT: the Artemis comparison tool

2005 1.3k citations Julian Parkhill et al. profile →
Dominant and diet-responsive groups of bacteria within the human colonic microbiota

2010 1.2k citations Alan W. Walker, Paul J. Scott et al. profile →
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

2011 879 citations Simon R. Harris, Julian Parkhill et al. profile →
Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota

2007 818 citations Alan W. Walker, Julian Parkhill et al. profile →
Evolution of MRSA During Hospital Transmission and Intercontinental Spread

2010 818 citations Simon R. Harris, Edward J. Feil et al. Science profile →
Circlator: automated circularization of genome assemblies using long sequencing reads

2015 719 citations Martin Hunt, Nishadi De Silva et al. profile →
DNAPlotter: circular and linear interactive genome visualization

2008 702 citations Julian Parkhill et al. profile →
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

2012 644 citations Julian Parkhill et al. profile →
Producing polished prokaryotic pangenomes with the Panaroo pipeline

2020 576 citations Gerry Tonkin‐Hill, Neil MacAlasdair et al. profile →
Genetic Analysis of the Capsular Biosynthetic Locus from All 90 Pneumococcal Serotypes

2006 567 citations Stephen D. Bentley, David M. Aanensen et al. profile →
High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease

2011 561 citations Alan W. Walker, Carol Churcher et al. profile →
Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study

2013 472 citations Simon R. Harris, Sharon J. Peacock et al. profile →
Human placenta has no microbiome but can contain potential pathogens

2019 469 citations Marcus C. de Goffau, Sharon J. Peacock et al. profile →
Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

2009 468 citations Duncan J. Maskell, Gordon Dougan et al. profile →
Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak

2012 462 citations Matthew T. G. Holden, Matthew J. Ellington et al. profile →
Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions

2013 409 citations Alan W. Walker, Julian Parkhill et al. profile →
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study

2012 409 citations Simon R. Harris, Edward J. P. Cartwright et al. profile →
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

2017 405 citations Martin Hunt, Leonor Sánchez-Busó et al. Microbial Genomics profile →
Targeted Restoration of the Intestinal Microbiota with a Simple, Defined Bacteriotherapy Resolves Relapsing Clostridium difficile Disease in Mice

2012 404 citations Trevor D. Lawley, Alan W. Walker et al. profile →
Evolution and transmission of drug-resistant tuberculosis in a Russian population

2014 350 citations Simon R. Harris, Jukka Corander et al. profile →
Modulation of the human gut microbiota by dietary fibres occurs at the species level

2016 317 citations Alan W. Walker, Julian Parkhill et al. profile →
A decade of advances in transposon-insertion sequencing

2020 253 citations Amy K. Cain, Lars Barquist et al. profile →

Peers

Countries citing papers authored by Julian Parkhill

Since Specialization

Citations

This map shows the geographic impact of Julian Parkhill's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Julian Parkhill with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Julian Parkhill more than expected).

Fields of papers citing papers by Julian Parkhill

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Julian Parkhill. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Julian Parkhill. The network helps show where Julian Parkhill may publish in the future.

Co-authorship network of co-authors of Julian Parkhill

This figure shows the co-authorship network connecting the top 25 collaborators of Julian Parkhill. A scholar is included among the top collaborators of Julian Parkhill based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Julian Parkhill. Julian Parkhill is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Genomic evaluation of phenotypic antibiotic susceptibility patterns as a surrogate for MRSA relatedness and putative transmission during outbreak investigations 2024 ·Infection Prevention in Practice ·Francesc Coll,Michelle S. Toleman,Ewan M. Harrison,Beth Blane,Dorota Jamrozy,Nicholas M. Brown,Julian Parkhill,Sharon J. Peacock	1
2	Bacterial genotypic and patient risk factors for adverse outcomes in Escherichia coli bloodstream infections: a prospective molecular epidemiological study 2022 ·Journal of Antimicrobial Chemotherapy ·Elita Jauneikaite,Kate Honeyford,(unknown),Mia Mosavie,Max Pearson,(unknown),Matthew J. Ellington,Julian Parkhill,Céire Costelloe,Neil Woodford,Shiranee Sriskandan	7
3	Identifying virulence determinants of multidrug-resistant Klebsiella pneumoniae in Galleria mellonella 2021 ·Pathogens and Disease ·Sebastian Bruchmann,Theresa Feltwell,Julian Parkhill,Francesca L. Short	32
4	Kill and cure: genomic phylogeny and bioactivity of Burkholderia gladioli bacteria capable of pathogenic and beneficial lifestyles 2021 ·Microbial Genomics ·C. Hal Jones,Gordon Webster,Alex J. Mullins,Matthew Jenner,Matthew Bull,Yousef Dashti,Theodore Spilker,Julian Parkhill,Thomas R. Connor,John J. LiPuma,Gregory L. Challis,Eshwar Mahenthiralingam	32
5	A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence 2020 ·PubMed ·Elisa Venturini,Sarah L. Svensson,Sandra Maaß,Rick Gelhausen,Florian Eggenhofer,Lei Li,Amy K. Cain,Julian Parkhill,Dörte Becher,Rolf Backofen,Lars Barquist,Cynthia M. Sharma,Alexander J. Westermann,Jörg Vogel	35
6	'Candidatus Ornithobacterium hominis': insights gained from draft genomes obtained from nasopharyngeal swabs 2019 ·Microbial Genomics ·Susannah J. Salter,Paul J. Scott,Andrew J. Page,Alan Tracey,Marcus C. de Goffau,Claire Cormie,Bernardo Ochoa‐Montaño,Clare Ling,(unknown),Paul Turner,Julian Parkhill	13
7	One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock 2019 ·mBio ·Catherine Ludden,Kathy E. Raven,Dorota Jamrozy,Theodore Gouliouris,Beth Blane,Francesc Coll,Marcus C. de Goffau,Plamena Naydenova,Carolyne Horner,Juan Hernandez-Garcia,Paul M. Wood,Nazreen F. Hadjirin,Milorad Radakovic,Nicholas M. Brown,Mark J. Holmes,Julian Parkhill,Sharon J. Peacock	132
8	Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection 2019 ·mBio ·Alan McNally,Teemu Kallonen,Christopher Connor,Khalil Abudahab,David M. Aanensen,Carolyne Horner,Sharon J. Peacock,Julian Parkhill,Nicholas J. Croucher,Jukka Corander	79
9	Genome-wide epistasis and co-selection study using mutual information 2019 ·Nucleic Acids Research ·Johan Pensar,Santeri Puranen,Brian J. Arnold,Neil MacAlasdair,(unknown),Gerry Tonkin‐Hill,Maiju Pesonen,(unknown),(unknown),Leonor Sánchez-Busó,John A. Lees,Claire Chewapreecha,Stephen D. Bentley,Simon R. Harris,Julian Parkhill,Nicholas J. Croucher,Jukka Corander	30
10	The Capsule Regulatory Network of Klebsiella pneumoniae Defined by density-TraDISort 2018 ·mBio ·Matthew J. Dorman,Theresa Feltwell,David Goulding,Julian Parkhill,Francesca L. Short	100
11	Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis 2016 ·Microbial Genomics ·John A. Lees,Philip H. C. Kremer,Ana Sousa Manso,Nicholas J. Croucher,Bart Ferwerda,Mercedes Valls Serón,Marco R. Oggioni,Julian Parkhill,Matthijs C. Brouwer,Arie van der Ende,Diederik van de Beek,Stephen D. Bentley	30
12	Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data 2016 ·Microbial Genomics ·Andrew J. Page,Nishadi De Silva,Martin Hunt,Michael A. Quail,Julian Parkhill,Simon R. Harris,Thomas D. Otto,Jacqueline A. Keane	165
13	Novel Determinants of Antibiotic Resistance: Identification of Mutated Loci in Highly Methicillin-Resistant Subpopulations of Methicillin-Resistant Staphylococcus aureus 2014 ·mBio ·Janina Dordel,Choon Kim,Marilyn Chung,María Pardos de la Gándara,Matthew T. G. Holden,Julian Parkhill,Hermínia de Lencastre,Stephen D. Bentley,Alexander Tomasz	64
14	Use of Vitek 2 Antimicrobial Susceptibility Profile To Identify mecC in Methicillin-Resistant Staphylococcus aureus 2013 ·Journal of Clinical Microbiology ·Edward J. P. Cartwright,Gavin K. Paterson,Kathy E. Raven,Ewan M. Harrison,Theodore Gouliouris,Angela Kearns,Bruno Pichon,Giles Edwards,Robert Skov,Anders Rhod Larsen,Mark A. Holmes,Julian Parkhill,Sharon J. Peacock,M. Estée Török	44
15	Evolution of MRSA During Hospital Transmission and Intercontinental Spreadbreakdown → 2010 ·Science ·Simon R. Harris,Edward J. Feil,Matthew T. G. Holden,Michael A. Quail,Emma K. Nickerson,Narisara Chantratita,Susana Gardete,Ana Tavares,Nick Day,Jodi A. Lindsay,Jonathan D. Edgeworth,Hermı́nia de Lencastre,Julian Parkhill,Sharon J. Peacock,Stephen D. Bentley	818
16	Antibiotic Treatment of Clostridium difficile Carrier Mice Triggers a Supershedder State, Spore-Mediated Transmission, and Severe Disease in Immunocompromised Hosts 2009 ·Infection and Immunity ·Trevor D. Lawley,Simon Clare,Alan W. Walker,David Goulding,Richard A. Stabler,Nicholas J. Croucher,Pietro Mastroeni,Paul J. Scott,Claire Raisen,Lynda Mottram,Neil F. Fairweather,Brendan W. Wren,Julian Parkhill,Gordon Dougan	281
17	Rapid Virulence Annotation (RVA): Identification of virulence factors using a bacterial genome library and multiple invertebrate hosts 2008 ·Proceedings of the National Academy of Sciences ·Nicholas R. Waterfield,Mónica Sánchez-Contreras,Ioannis Eleftherianos,Andrea J. Dowling,Guowei Yang,Paul A. Wilkinson,Julian Parkhill,Nicholas R. Thomson,Stuart E. Reynolds,Helge B. Bode,(unknown),Richard H. ffrench‐Constant	62
18	Genome plasticity of BCG and impact on vaccine efficacy 2007 ·Proceedings of the National Academy of Sciences ·Roland Brosch,Stephen V. Gordon,Thierry Garnier,Karin Eiglmeier,Wafa Frigui,Philippe Valenti,(unknown),Stéphanie Duthoy,Céline Lacroix,(unknown),Jacqueline Inwald,Paul Golby,(unknown),R. Glyn Hewinson,Marcel A. Behr,Michael A. Quail,Carol Churcher,Bart Barrell,Julian Parkhill,Stewart T. Cole	419
19	Microevolution and history of the plague bacillus, Yersinia pestis 2004 ·Proceedings of the National Academy of Sciences ·Mark Achtman,Giovanna Morelli,Peixuan Zhu,Thierry Wirth,Ines Diehl,Barica Kušećek,Amy J. Vogler,David M. Wagner,Christopher J. Allender,W. Ryan Easterday,Viviane Chenal‐Francisque,Patricia L. Worsham,Nicholas R. Thomson,Julian Parkhill,Luther E. Lindler,Élisabeth Carniel,Paul Keim	344
20	Reverse Transcriptase-Mediated Tropism Switching in Bordetella Bacteriophage 2002 ·Science ·Minghsun Liu,Rajendar Deora,Sergei Doulatov,Mari Gingery,Frederick A. Eiserling,Andrew Preston,Duncan J. Maskell,Robert W. Simons,Peggy A. Cotter,Julian Parkhill,Jeff F. Miller	198

About Julian Parkhill

Julian Parkhill is a scholar working on Endocrinology, Molecular Medicine and Microbiology, having authored 566 papers that have together received 56.2k indexed citations. Recurring topics across this work include Antimicrobial Resistance in Staphylococcus (100 papers), Genomics and Phylogenetic Studies (96 papers) and Antibiotic Resistance in Bacteria (78 papers). The work is most often cited by research in Endocrinology (8.7k citations), Molecular Medicine (7.4k citations) and Microbiology (5.7k citations). Julian Parkhill has collaborated with scholars based in United Kingdom, United States and Australia. Frequent co-authors include Stephen D. Bentley, Simon R. Harris, Matthew T. G. Holden, Alan W. Walker, Jacqueline A. Keane, Sharon J. Peacock, Andrew J. Page, Marie‐Adèle Rajandream, Matthew Berriman and Tim Carver. Their work appears in journals such as Nature, Science and New England Journal of Medicine.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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