Aron Marchler‐Bauer

46.1k citations

50 papers · 12.9k indexed · 10 hit papers · h-index 29

Impact in

Molecular Biology top 0.5%
- Genomics and Phylogenetic Studies
- RNA and protein synthesis mechanisms
- Fungal and yeast genetics research
- Protein Structure and Dynamics
- Photosynthetic Processes and Mechanisms
Endocrinology top 0.5%

Papers in

Molecular Biology 45
- Genomics and Phylogenetic Studies 27
- RNA and protein synthesis mechanisms 17
- Protein Structure and Dynamics 14
- Machine Learning in Bioinformatics 11
- Microbial Metabolic Engineering and Bioproduction 7
- Bioinformatics and Genomic Networks 6
Aging 1

Co-authors: Stephen H. Bryant Gabriele H. Marchler Renata C. Geer Christopher J. Lanczycki Myra K. Derbyshire Roxanne A. Yamashita Dachuan Zhang Shennan Lu
Journals: Nucleic Acids Research (16 papers)Proteins Structure Function and Bioinformatics (9 papers)Database (5 papers)Bioinformatics (4 papers)Cancer Research (2 papers)
Partner nations: United States Austria France

In The Last Decade

Aron Marchler‐Bauer

49 papers receiving 12.7k citations

Hit Papers

10 papers align trajectories log scale

The conserved domain database in 2023 2022 · 531 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2022 Nucleic Acids Research
2019 Nucleic Acids Research
2014 Nucleic Acids Research
2012 Nucleic Acids Research
2009 Nucleic Acids Research
2004 Nucleic Acids Research
2004 Nucleic Acids Research
2003 Nucleic Acids Research
2002 Nucleic Acids Research
1996 The EMBO Journal

Peers

Countries citing papers authored by Aron Marchler‐Bauer

Since Specialization

Citations

This map shows the geographic impact of Aron Marchler‐Bauer's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Aron Marchler‐Bauer with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Aron Marchler‐Bauer more than expected).

Fields of papers citing papers by Aron Marchler‐Bauer

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Aron Marchler‐Bauer. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Aron Marchler‐Bauer. The network helps show where Aron Marchler‐Bauer may publish in the future.

Co-authors

The 25 scholars most cited alongside Aron Marchler‐Bauer, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Aron Marchler‐Bauer Line = papers co-authored together Aron Marchler‐Bauer links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work
1	The NIH Comparative Genomics Resource: addressing the promises and challenges of comparative genomics on human health BMC Genomics ·Veronika Chantika Da Gomez, Lucas Reinert, E. Sally Chang, Aron Marchler‐Bauer, Valérie Schneider	2023	11
2	Biological Assembly Comparison with VAST+ Methods in molecular biology ·Thomas Madej, Aron Marchler‐Bauer, Christopher J. Lanczycki, Dachuan Zhang, Stephen H. Bryant	2020	10
3	iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures Bioinformatics ·Jiyao Wang, Philippe Youkharibache, Dachuan Zhang, Christopher J. Lanczycki, Renata C. Geer, Thomas Madej, Lon Phan, Minghong Ward, Shennan Lu, Gabriele H. Marchler, Yanli Wang, Stephen H. Bryant, Lewis Y. Geer, Aron Marchler‐Bauer	2019	127
4	CDD: conserved domains and protein three-dimensional structure Nucleic Acids Research ·Aron Marchler‐Bauer, Chanjuan Zheng, Farideh Chitsaz, Myra K. Derbyshire, Lewis Y. Geer, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, David I. Hurwitz, Christopher J. Lanczycki, Fu Lu, Shennan Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Dachuan Zhang, Stephen H. Bryant Hit paper breakdown →	2012	714
5	IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins Nucleic Acids Research ·Benjamin A. Shoemaker, Dapeng Zhang, Manoj Tyagi, Ratna R. Thangudu, Jessica H. Fong, Aron Marchler‐Bauer, Stephen H. Bryant, Thomas Madej, Anna R. Panchenko	2011	70
6	Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes Database ·Viswanadham Sridhara, Aron Marchler‐Bauer, Stephen H. Bryant, Lewis Y. Geer	2011	3
7	AlexSys: a knowledge-based expert system for multiple sequence alignment construction and analysis Nucleic Acids Research ·Ngwu Anene Augustine, Olivier Poch, Aron Marchler‐Bauer, Julie Thompson	2010	10
8	Inferred Biomolecular Interaction Server—a web server to analyze and predict protein interacting partners and binding sites Nucleic Acids Research ·Benjamin A. Shoemaker, Dachuan Zhang, Ratna R. Thangudu, Manoj Tyagi, Jessica H. Fong, Aron Marchler‐Bauer, Stephen H. Bryant, Thomas Madej, Anna R. Panchenko	2009	67
9	Protein subfamily assignment using the Conserved Domain Database BMC Research Notes ·Jessica H. Fong, Aron Marchler‐Bauer	2008	24
10	Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis Briefings in Bioinformatics ·Ngwu Anene Augustine, Carlos Federico Rosales Guerrero, Anne Friedrich, Frédéric Plewniak, Olivier Poch, Aron Marchler‐Bauer, Julie Thompson	2008	15
11	MMDB: annotating protein sequences with Entrez's 3D-structure database Nucleic Acids Research ·Y. Wang, Kenneth J. Addess, Jun Chen, Lewis Y. Geer, Jiali He, Siqian He, Shuo Lu, Thomas Madej, Aron Marchler‐Bauer, Zi-Yue Fu, Nong Zhang, Stephen H. Bryant	2006	77
12	Identification of a Subunit of a Novel Kleisin-β/SMC Complex as a Potential Substrate of Protein Phosphatase 2A Current Biology ·Foong May Yeong, Hans Hombauer, Kerstin S. Wendt, Toru Hirota, Ingrid Mudrak, Karl Mechtler, W. De Boer, Aron Marchler‐Bauer, Kōichi Tanaka, Jan‐Michael Peters, Egon Ogris	2003	81
13	Comparison of sequence and structure alignments for protein domains Proteins Structure Function and Bioinformatics ·Aron Marchler‐Bauer, Anna R. Panchenko, Naomi Ariel, Stephen H. Bryant	2002	34
14	CDD: a database of conserved domain alignments with links to domain three-dimensional structure Nucleic Acids Research ·Aron Marchler‐Bauer Hit paper breakdown →	2002	543
15	Domain size distributions can predict domain boundaries Bioinformatics ·Sarah J. Wheelan, Aron Marchler‐Bauer, Stephen H. Bryant	2000	144
16	Combination of threading potentials and sequence profiles improves fold recognition 1 1Edited by B. Honig Journal of Molecular Biology ·Anna R. Panchenko, Aron Marchler‐Bauer, Stephen H. Bryant	2000	92
17	Threading with explicit models for evolutionary conservation of structure and sequence Proteins Structure Function and Bioinformatics ·Alexander Panchenko, Aron Marchler‐Bauer, Stephen H. Bryant	1999	17
18	MMDB: Entrez's 3D structure database Nucleic Acids Research ·Aron Marchler‐Bauer, Kenneth J. Addess, Colombe Chappey, Lewis Y. Geer, Thomas Madej, Yo Matsuo, Y. Wang, Stephen H. Bryant	1999	28
19	Measures of threading specificity and accuracy Proteins Structure Function and Bioinformatics ·Aron Marchler‐Bauer, Stephen H. Bryant	1997	1
20	An improved pair potential to recognize native protein folds Proteins Structure Function and Bioinformatics ·Aron Marchler‐Bauer, Anton Beyer	1994	42

About Aron Marchler‐Bauer

Aron Marchler‐Bauer is a scholar working on Molecular Biology, Aging, Spectroscopy, Materials Chemistry and Parasitology, having authored 50 papers that have together received 12.9k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (27 papers), RNA and protein synthesis mechanisms (17 papers), Protein Structure and Dynamics (14 papers), Enzyme Structure and Function (14 papers), Machine Learning in Bioinformatics (11 papers), Advanced Proteomics Techniques and Applications (8 papers), Microbial Metabolic Engineering and Bioproduction (7 papers) and Bioinformatics and Genomic Networks (6 papers). The work is most often cited by research in Molecular Biology (8.6k citations), Endocrinology (542 citations), Plant Science (3.5k citations), Aging (145 citations) and Biotechnology (611 citations). Aron Marchler‐Bauer has collaborated with scholars based in United States, Austria and France. Frequent co-authors include Stephen H. Bryant, Gabriele H. Marchler, Renata C. Geer, Christopher J. Lanczycki, Myra K. Derbyshire, Roxanne A. Yamashita, Dachuan Zhang, Shennan Lu, Noreen R. Gonzales and Narmada Thanki. Their work appears in journals such as Nucleic Acids Research, Proteins Structure Function and Bioinformatics, Database, Bioinformatics and Cancer Research.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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