Lincoln Stein

79.1k total citations · 11 hit papers
203 papers, 16.7k citations indexed

About

Lincoln Stein is a scholar working on Molecular Biology, Genetics and Cancer Research. According to data from OpenAlex, Lincoln Stein has authored 203 papers receiving a total of 16.7k indexed citations (citations by other indexed papers that have themselves been cited), including 141 papers in Molecular Biology, 38 papers in Genetics and 32 papers in Cancer Research. Recurrent topics in Lincoln Stein's work include Genomics and Phylogenetic Studies (52 papers), Bioinformatics and Genomic Networks (38 papers) and Cancer Genomics and Diagnostics (28 papers). Lincoln Stein is often cited by papers focused on Genomics and Phylogenetic Studies (52 papers), Bioinformatics and Genomic Networks (38 papers) and Cancer Genomics and Diagnostics (28 papers). Lincoln Stein collaborates with scholars based in United States, Canada and United Kingdom. Lincoln Stein's co-authors include Guanming Wu, Suzanna Lewis, Chris Mungall, Peter D’Eustachio, Xin Feng, Doreen Ware, Henning Hermjakob, Ian Holmes, Allen Day and Eric S. Lander and has published in prestigious journals such as Nature, Science and Proceedings of the National Academy of Sciences.

In The Last Decade

Lincoln Stein

197 papers receiving 16.3k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The Generic Genome Browser: A Building Block for a Model Organism System Database

2002 848 citations Lincoln Stein, Chris Mungall et al. profile →
Reactome knowledgebase of human biological pathways and processes

2008 664 citations Lisa Matthews, Marc Gillespie et al. Nucleic Acids Research profile →
Unlocking the secrets of the genome

2009 609 citations Lincoln Stein et al. profile →
JBrowse: A next-generation genome browser

2009 536 citations Lincoln Stein, Chris Mungall et al. profile →
Reactome pathway analysis: a high-performance in-memory approach

2017 533 citations Antonio Fabregat, Konstantinos Sidiropoulos et al. profile →
The Sequence Ontology: a tool for the unification of genome annotations

2005 519 citations Chris Mungall, Lincoln Stein et al. Genome biology profile →
JBrowse: a dynamic web platform for genome visualization and analysis

2016 503 citations Robert Buels, Colin Diesh et al. Genome biology profile →
Distinct routes of lineage development reshape the human blood hierarchy across ontogeny

2015 493 citations Faiyaz Notta, Sasan Zandi et al. Science profile →
A human functional protein interaction network and its application to cancer data analysis

2010 490 citations Guanming Wu, Lincoln Stein et al. Genome biology profile →
The case for cloud computing in genome informatics

2010 328 citations Lincoln Stein Genome Biology profile →
JBrowse 2: a modular genome browser with views of synteny and structural variation

2023 128 citations Colin Diesh, Garrett Stevens et al. Genome biology profile →

Peers

Countries citing papers authored by Lincoln Stein

Since Specialization

Citations

This map shows the geographic impact of Lincoln Stein's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Lincoln Stein with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Lincoln Stein more than expected).

Fields of papers citing papers by Lincoln Stein

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Lincoln Stein. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Lincoln Stein. The network helps show where Lincoln Stein may publish in the future.

Co-authorship network of co-authors of Lincoln Stein

This figure shows the co-authorship network connecting the top 25 collaborators of Lincoln Stein. A scholar is included among the top collaborators of Lincoln Stein based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Lincoln Stein. Lincoln Stein is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	In silico generation of synthetic cancer genomes using generative AI 2025 ·Cell Genomics ·Ander Díaz‐Navarro, (unknown), Wei Jiao, Bo Wang, Lincoln Stein	0
2	MMDRP: drug response prediction and biomarker discovery using multi-modal deep learning 2024 ·Bioinformatics Advances ·(unknown), Lincoln Stein	4
3	FAIR Header Reference genome: a TRUSTworthy standard 2024 ·Briefings in Bioinformatics ·(unknown), Mark D. Wilkinson, Chris Mungall, Scott Cain, Stephen Richards, Paul W. Sternberg, (unknown), Jonathan L. Jacobs, Scott M. Geib, Daniela Raciti, Karen Yook, Lincoln Stein, (unknown)	0
4	JBrowse 2: a modular genome browser with views of synteny and structural variation breakdown → 2023 ·Genome biology ·Colin Diesh, Garrett Stevens, Peter Xie, Teresa De Jesus Martinez, Elliot A. Hershberg, (unknown), (unknown), Shihab Dider, Junjun Zhang, Caroline Bridge, Gregory Hogue, Andrew Duncan, (unknown), (unknown), Benjamin N. Bimber, Robin Haw, Scott Cain, Robert Buels, Lincoln Stein, Ian Holmes	128
5	A brain precursor atlas reveals the acquisition of developmental-like states in adult cerebral tumours 2022 ·Nature Communications ·(unknown), Daniel J. Kunz, Ibrahim El-Hamamy, Quang M. Trinh, (unknown), Laura M. Richards, Warren D. Foltz, (unknown), (unknown), Maria Vladoiu, Jiao Zhang, (unknown), Trevor J. Pugh, Michael D. Taylor, Sarah A. Teichmann, Lincoln Stein, Benjamin D. Simons, Peter B. Dirks	19
6	PanCancer analysis of somatic mutations in repetitive regions reveals recurrent mutations in snRNA U2 2022 ·npj Genomic Medicine ·(unknown), Ander Díaz‐Navarro, Ferran Nadeu, Ana S. Pitiot, (unknown), Shimin Shuai, Milagros Balbı́n, José M. C. Tubío, Sı́lvia Beà, José I. Martı́n-Subero, Ana Gutiérrez‐Fernández, Lincoln Stein, Elı́as Campo, Xosé S. Puente	7
7	Using Reactome to build an autophagy mechanism knowledgebase 2020 ·Autophagy ·Thawfeek Varusai, S Jupe, Cristoffer Sevilla, Lisa Matthews, Marc Gillespie, Lincoln Stein, Guanming Wu, Peter D’Eustachio, Emmanouil Metzakopian, Henning Hermjakob	8
8	<p>Combined EsophaCap cytology and MUC2 immunohistochemistry for screening of intestinal metaplasia, dysplasia and carcinoma</p> 2019 ·Clinical and Experimental Gastroenterology ·Zhongren Zhou, Irina Kalatskaya, Donna Russell, Norman E. Marcon, Maria Cirocco, Paul M. Krzyzanowski, Cathy Streutker, (unknown), Virginia R. Litle, Tony E. Godfrey, Lincoln Stein	13
9	Quantifying immune-based counterselection of somatic mutations 2019 ·PLoS Genetics ·Fan Yang, Dae‐Kyum Kim, Hidewaki Nakagawa, Shuto Hayashi, Seiya Imoto, Lincoln Stein, Frederick P. Roth	12
10	Reactome graph database: Efficient access to complex pathway data 2018 ·PLoS Computational Biology ·Antonio Fabregat, (unknown), Guilherme Viteri, Konstantinos Sidiropoulos, Pablo Marín-García, Peipei Ping, Guanming Wu, Lincoln Stein, Peter D’Eustachio, Henning Hermjakob	169
11	ISOWN: accurate somatic mutation identification in the absence of normal tissue controls 2017 ·Genome Medicine ·Irina Kalatskaya, Quang M. Trinh, Melanie Spears, John D. McPherson, John M.S. Bartlett, Lincoln Stein	30
12	A Metastatic Mouse Model Identifies Genes That Regulate Neuroblastoma Metastasis 2016 ·Cancer Research ·Bo Kyung A. Seong, (unknown), Robin Hallett, Christina K. Yung, Lincoln Stein, (unknown), (unknown), Cynthia Hawkins, Meredith S. Irwin, David R. Kaplan	30
13	H3K4-specific histone methyltransferase MLL3 regulates EMT in pancreatic cancer cells 2016 ·Journal of Cancer Science & Therapy ·Lincoln Stein	1
14	Plant Reactome: a resource for plant pathways and comparative analysis 2016 ·Nucleic Acids Research ·Sushma Naithani, Justin Preece, Peter D’Eustachio, Parul Gupta, Vindhya Amarasinghe, Palitha Dharmawardhana, Guanming Wu, Antonio Fabregat, Justin Elser, Joel Weiser, Maria Keays, Alfonso Muñoz-Pomer Fuentes, Robert Petryszak, Lincoln Stein, Doreen Ware, Pankaj Jaiswal	41
15	PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors 2015 ·Genome Biology ·Amit G. Deshwar, Shankar Vembu, Christina K. Yung, Gun Ho Jang, Lincoln Stein, Quaid Morris	232
16	Distinct routes of lineage development reshape the human blood hierarchy across ontogeny breakdown → 2015 ·Science ·Faiyaz Notta, Sasan Zandi, Naoya Takayama, Stephanie M. Dobson, Olga I. Gan, Gavin W. Wilson, Kerstin B. Kaufmann, Jessica McLeod, Elisa Laurenti, Cyrille F. Dunant, John D. McPherson, Lincoln Stein, Yigal Dror, John E. Dick	493
17	The Oryza Map Alignment Project 2008 ·Rod A. Wing, Hye‐Ran Kim, Yeisoo Yu, Bonnie L. Hurwitz, Andrea Zuccolo, (unknown), Dave Kudrna, José Luis Goicoechea, Chuanzhu Fan, Ruifeng He, (unknown), Kristi Collura, Jennifer Currie, Steve Rounsley, W. Richard McCombie, Blake C. Meyers, Li Liao, Doreen Ware, Lincoln Stein, Scott A. Jackson	2
18	How to set up and maintain a Web site (2nd ed.) 1996 ·Addison-Wesley Longman Publishing Co., Inc. eBooks ·Lincoln Stein	5
19	How to Set up and Maintain a World Wide Web Site: The Guide for Information Providers 1995 ·Addison-Wesley Longman Publishing Co., Inc. eBooks ·Lincoln Stein	7
20	Requirements for a Deductive Query Language in the MapBase Genome-Mapping Database. 1993 ·Nathan Goodman, Steve Rozen, Lincoln Stein	13

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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