John J. Ferrie

1.1k total citations
26 papers, 699 citations indexed

About

John J. Ferrie is a scholar working on Molecular Biology, Neurology and Organic Chemistry. According to data from OpenAlex, John J. Ferrie has authored 26 papers receiving a total of 699 indexed citations (citations by other indexed papers that have themselves been cited), including 18 papers in Molecular Biology, 6 papers in Neurology and 5 papers in Organic Chemistry. Recurrent topics in John J. Ferrie's work include Parkinson's Disease Mechanisms and Treatments (6 papers), Chemical Synthesis and Analysis (5 papers) and Protein Structure and Dynamics (5 papers). John J. Ferrie is often cited by papers focused on Parkinson's Disease Mechanisms and Treatments (6 papers), Chemical Synthesis and Analysis (5 papers) and Protein Structure and Dynamics (5 papers). John J. Ferrie collaborates with scholars based in United States, China and Japan. John J. Ferrie's co-authors include E. James Petersson, Xavier Darzacq, Robert Tjian, Conor M. Haney, Elizabeth G. Mietlicki‐Baase, Robert H. Mach, Lauren E. McGrath, Matthew R. Hayes, Thomas J. A. Graham and Chia‐Ju Hsieh and has published in prestigious journals such as Journal of the American Chemical Society, Genes & Development and Applied Physics Letters.

In The Last Decade

John J. Ferrie

25 papers receiving 697 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
John J. Ferrie United States 17 469 143 120 96 63 26 699
Eric Lindberg United States 15 455 1.0× 152 1.1× 89 0.7× 86 0.9× 89 1.4× 27 756
M. Julia Roberti Germany 14 416 0.9× 87 0.6× 93 0.8× 105 1.1× 112 1.8× 17 729
Hai‐Young Kim Germany 13 477 1.0× 77 0.5× 360 3.0× 271 2.8× 104 1.7× 27 918
W. Michael Babinchak United States 8 629 1.3× 34 0.2× 191 1.6× 128 1.3× 66 1.0× 9 788
David J. Busch United States 17 742 1.6× 107 0.7× 126 1.1× 82 0.9× 54 0.9× 22 1.1k
Buyan Pan United States 10 260 0.6× 95 0.7× 44 0.4× 45 0.5× 37 0.6× 19 389
Niraja Kedia India 9 213 0.5× 34 0.2× 71 0.6× 137 1.4× 49 0.8× 18 395
Martin Hintersteiner United Kingdom 15 697 1.5× 76 0.5× 17 0.1× 169 1.8× 66 1.0× 20 1.0k
Conor M. Haney United States 12 295 0.6× 157 1.1× 163 1.4× 128 1.3× 50 0.8× 15 497
Dezerae Cox Australia 13 639 1.4× 26 0.2× 146 1.2× 207 2.2× 122 1.9× 23 850

Countries citing papers authored by John J. Ferrie

Since Specialization
Citations

This map shows the geographic impact of John J. Ferrie's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by John J. Ferrie with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites John J. Ferrie more than expected).

Fields of papers citing papers by John J. Ferrie

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by John J. Ferrie. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by John J. Ferrie. The network helps show where John J. Ferrie may publish in the future.

Co-authorship network of co-authors of John J. Ferrie

This figure shows the co-authorship network connecting the top 25 collaborators of John J. Ferrie. A scholar is included among the top collaborators of John J. Ferrie based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with John J. Ferrie. John J. Ferrie is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Ferrie, John J., et al.. (2025). Accurate Prediction of Protein Tertiary and Quaternary Stability Using Fine-Tuned Protein Language Models and Free Energy Perturbation. International Journal of Molecular Sciences. 26(15). 7125–7125.
2.
Janssen, Bieneke, Guilong Tian, Zsofia Lengyel‐Zhand, et al.. (2023). Identification of a Putative α-synuclein Radioligand Using an in silico Similarity Search. Molecular Imaging and Biology. 25(4). 704–719. 8 indexed citations
3.
Graham, Thomas G.W., John J. Ferrie, Gina M. Dailey, Robert Tjian, & Xavier Darzacq. (2022). Detecting molecular interactions in live-cell single-molecule imaging with proximity-assisted photoactivation (PAPA). eLife. 11. 23 indexed citations
4.
Ferrie, John J., et al.. (2022). “Structure”-function relationships in eukaryotic transcription factors: The role of intrinsically disordered regions in gene regulation. Molecular Cell. 82(21). 3970–3984. 75 indexed citations
5.
Ferrie, John J., et al.. (2021). Biomolecular simulation based machine learning models accurately predict sites of tolerability to the unnatural amino acid acridonylalanine. Scientific Reports. 11(1). 18406–18406. 7 indexed citations
6.
Ferrie, John J., et al.. (2021). The transcription factor activity gradient (TAG) model: contemplating a contact-independent mechanism for enhancer–promoter communication. Genes & Development. 36(1-2). 7–16. 84 indexed citations
7.
Ferrie, John J., et al.. (2020). Rosetta custom score functions accurately predict ΔΔ G of mutations at protein–protein interfaces using machine learning. Chemical Communications. 56(50). 6774–6777. 14 indexed citations
8.
Ferrie, John J., Zsofia Lengyel‐Zhand, Bieneke Janssen, et al.. (2020). Identification of a nanomolar affinity α-synuclein fibril imaging probe by ultra-high throughput in silico screening. Chemical Science. 11(47). 12746–12754. 35 indexed citations
9.
Ferrie, John J. & E. James Petersson. (2020). A Unified De Novo Approach for Predicting the Structures of Ordered and Disordered Proteins. The Journal of Physical Chemistry B. 124(27). 5538–5548. 18 indexed citations
10.
Lengyel‐Zhand, Zsofia, John J. Ferrie, Bieneke Janssen, et al.. (2020). Synthesis and characterization of high affinity fluorogenic α-synuclein probes. Chemical Communications. 56(24). 3567–3570. 27 indexed citations
11.
Hsieh, Chia‐Ju, John J. Ferrie, Kuiying Xu, et al.. (2018). Alpha Synuclein Fibrils Contain Multiple Binding Sites for Small Molecules. ACS Chemical Neuroscience. 9(11). 2521–2527. 59 indexed citations
12.
Ferrie, John J., Conor M. Haney, Buyan Pan, et al.. (2018). Using a FRET Library with Multiple Probe Pairs To Drive Monte Carlo Simulations of α-Synuclein. Biophysical Journal. 114(1). 53–64. 22 indexed citations
13.
Ferrie, John J., et al.. (2018). Systematic Evaluation of Soluble Protein Expression Using a Fluorescent Unnatural Amino Acid Reveals No Reliable Predictors of Tolerability. ACS Chemical Biology. 13(10). 2855–2861. 26 indexed citations
14.
Walters, Christopher R., John J. Ferrie, & E. James Petersson. (2018). Dithioamide substitutions in proteins: effects on thermostability, peptide binding, and fluorescence quenching in calmodulin. Chemical Communications. 54(14). 1766–1769. 17 indexed citations
15.
Ferrie, John J., et al.. (2017). Multicolor protein FRET with tryptophan, selective coumarin-cysteine labeling, and genetic acridonylalanine encoding. Chemical Communications. 53(80). 11072–11075. 23 indexed citations
16.
Lin, Yi‐Chih, et al.. (2017). Potential Artifacts in Sample Preparation Methods Used for Imaging Amyloid Oligomers and Protofibrils due to Surface-Mediated Fibril Formation. The Journal of Physical Chemistry B. 121(12). 2534–2542. 15 indexed citations
17.
Huang, Yun, John J. Ferrie, Xing Chen, et al.. (2016). Electronic interactions of i, i + 1 dithioamides: increased fluorescence quenching and evidence for n-to-π* interactions. Chemical Communications. 52(50). 7798–7801. 28 indexed citations
18.
Haney, Conor M., Rebecca F. Wissner, John B. Warner, et al.. (2015). Comparison of strategies for non-perturbing labeling of α-synuclein to study amyloidogenesis. Organic & Biomolecular Chemistry. 14(5). 1584–1592. 35 indexed citations
19.
McGee, David J., et al.. (2015). Photo-induced refractive index and topographical surface gratings in functionalized nanocarbon solid film. Applied Physics Letters. 107(18). 4 indexed citations
20.
Ferrie, John J., et al.. (2012). A comparative protease stability study of synthetic macrocyclic peptides that mimic two endocrine hormones. Bioorganic & Medicinal Chemistry Letters. 23(4). 989–995. 19 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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