John Braisted

8.7k total citations · 1 hit paper
40 papers, 2.8k citations indexed

About

John Braisted is a scholar working on Molecular Biology, Physiology and Computational Theory and Mathematics. According to data from OpenAlex, John Braisted has authored 40 papers receiving a total of 2.8k indexed citations (citations by other indexed papers that have themselves been cited), including 23 papers in Molecular Biology, 7 papers in Physiology and 5 papers in Computational Theory and Mathematics. Recurrent topics in John Braisted's work include Metabolomics and Mass Spectrometry Studies (5 papers), 3D Printing in Biomedical Research (5 papers) and Computational Drug Discovery Methods (5 papers). John Braisted is often cited by papers focused on Metabolomics and Mass Spectrometry Studies (5 papers), 3D Printing in Biomedical Research (5 papers) and Computational Drug Discovery Methods (5 papers). John Braisted collaborates with scholars based in United States, China and Malaysia. John Braisted's co-authors include Alexander I. Saeed, John Quackenbush, Eleanor Howe, Joseph White, Jianwei Li, Wei Liang, Mathangi Thiagarajan, Nirmal Bhagabati, Anton Simeonov and Matthew D. Hall and has published in prestigious journals such as Nature Communications, Bioinformatics and PLoS ONE.

In The Last Decade

John Braisted

38 papers receiving 2.8k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

[9] TM4 Microarray Software Suite

2006 1.7k citations John Braisted et al. profile →

Peers

Countries citing papers authored by John Braisted

Since Specialization

Citations

This map shows the geographic impact of John Braisted's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by John Braisted with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites John Braisted more than expected).

Fields of papers citing papers by John Braisted

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by John Braisted. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by John Braisted. The network helps show where John Braisted may publish in the future.

Co-authorship network of co-authors of John Braisted

This figure shows the co-authorship network connecting the top 25 collaborators of John Braisted. A scholar is included among the top collaborators of John Braisted based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with John Braisted. John Braisted is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Effects of preanalytical sample collection and handling on comprehensive metabolite measurements in human urine biospecimens 2024 ·American Journal of Epidemiology ·John Braisted, Theresa R. Henderson, John W. Newman, Steven C. Moore, Joshua N. Sampson, Kathleen M. McClain, Sharon A. Ross, David J. Baer, Ewy A. Mathé, Krista A. Zanetti	0
2	3D-Suspension culture platform for high throughput screening of neurotoxic chemicals using LUHMES dopaminergic neurons 2024 ·SLAS DISCOVERY ·Zhi‐Bin Tong, Ruili Huang, John Braisted, Pei‐Hsuan Chu, Anton Simeonov, David Gerhold	3
3	Nucleotide, Phospholipid, and Kynurenine Metabolites Are Robustly Associated with COVID-19 Severity and Time of Plasma Sample Collection in a Prospective Cohort Study 2023 ·International Journal of Molecular Sciences ·(unknown), (unknown), John Braisted, Su H. Chu, Qingwen Chen, (unknown), Sofina Begum, Joann Diray‐Arce, Jaleal Sanjak, Mengna Huang, Jessica Lasky‐Su, Ewy A. Mathé	1
4	Stress-free cell aggregation by using the CEPT cocktail enhances embryoid body and organoid fitness 2023 ·Biofabrication ·Seungmi Ryu, Claire Weber, Pei‐Hsuan Chu, Ben Ernest, Vukasin M. Jovanovic, Tao Deng, Jaroslav Slamecka, Hyenjong Hong, (unknown), (unknown), Jason Inman, John Braisted, Marissa B. Hirst, Anton Simeonov, Ty C. Voss, (unknown), Ilyas Singeç	4
5	The value of prospective metabolomic susceptibility endotypes: broad applicability for infectious diseases 2023 ·EBioMedicine ·(unknown), Kevin Mendez, Sofina Begum, (unknown), (unknown), John Braisted, (unknown), (unknown), Mengna Huang, Su H. Chu, (unknown), Qingwen Chen, (unknown), Rachel S. Kelly, Kenneth B. Christopher, Joann Diray‐Arce, Ewy A. Mathé, Jessica Lasky‐Su	1
6	RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes 2022 ·Bioinformatics ·John Braisted, Andrew Patt, (unknown), Timothy Sheils, (unknown), Kyle Spencer, (unknown), Ewy A. Mathé	21
7	Transcriptomic profiling in canines and humans reveals cancer specific gene modules and biological mechanisms common to both species 2021 ·PLoS Computational Biology ·Gregory J. Tawa, John Braisted, David Gerhold, Gurmit Grewal, Christina Mazcko, Matthew Breen, G. Sitta Sittampalam, Amy K. LeBlanc	14
8	Human Pluripotent Stem Cells for High-Throughput Drug Screening and Characterization of Small Molecules 2021 ·Methods in molecular biology ·Seungmi Ryu, Pei‐Hsuan Chu, Claire Malley, John Braisted, Pinar Ormanoglu, Ruili Huang, Misha Itkin, Zina Itkin, Paul Shinn, Carleen Klumpp‐Thomas, Sam Michael, Carlos A. Tristan, Anton Simeonov, Ilyas Singeç	5
9	The MT1G Gene in LUHMES Neurons Is a Sensitive Biomarker of Neurotoxicity 2020 ·Neurotoxicity Research ·Zhi‐Bin Tong, John Braisted, Pei‐Hsuan Chu, David Gerhold	13
10	Stem Cell-Derived Endothelial Cell Model that Responds to Tobacco Smoke Like Primary Endothelial Cells 2020 ·Chemical Research in Toxicology ·Pei‐Hsuan Chu, Guibin Chen, David Kuo, John Braisted, (unknown), Yuhong Wang, Anton Simeonov, Manfred Boehm, David Gerhold	13
11	Cytotoxic Profiling of Annotated and Diverse Chemical Libraries Using Quantitative High-Throughput Screening 2019 ·SLAS DISCOVERY ·Olivia W. Lee, (unknown), (unknown), Dorian M. Cheff, Tobie D. Lee, Kelli M. Wilson, Joseph M. Johnson, Jameson Travers, John Braisted, Rajarshi Guha, Carleen Klumpp‐Thomas, Min Shen, Matthew D. Hall	12
12	The Toxmatrix: Chemo-Genomic Profiling Identifies Interactions That Reveal Mechanisms of Toxicity 2017 ·Chemical Research in Toxicology ·Zhi‐Bin Tong, Ruili Huang, Yuhong Wang, Carleen Klumpp‐Thomas, John Braisted, Zina Itkin, Paul Shinn, Menghang Xia, Anton Simeonov, David Gerhold	9
13	Small-Molecule Screens: A Gateway to Cancer Therapeutic Agents with Case Studies of Food and Drug Administration–Approved Drugs 2017 ·Pharmacological Reviews ·Nathan P. Coussens, John Braisted, Tyler Peryea, G. Sitta Sittampalam, Anton Simeonov, Matthew D. Hall	56
14	Fluorescence polarization assays in high-throughput screening and drug discovery: a review 2016 ·Methods and Applications in Fluorescence ·Matthew D. Hall, Adam Yasgar, Tyler Peryea, John Braisted, Ajit Jadhav, Anton Simeonov, Nathan P. Coussens	156
15	Proteomic View of Interactions of Shiga Toxin-Producing Escherichia coli with the Intestinal Environment in Gnotobiotic Piglets 2013 ·PLoS ONE ·Rembert Pieper, Quanshun Zhang, David Clark, Prashanth P. Parmar, (unknown), Moo‐Jin Suh, (unknown), John Braisted, (unknown), Saul Tzipori	13
16	In vivo versus in vitro protein abundance analysis of Shigella dysenteriaetype 1 reveals changes in the expression of proteins involved in virulence, stress and energy metabolism 2011 ·BMC Microbiology ·(unknown), Quanshun Zhang, John Braisted, Robert Fleischmann, Scott N. Peterson, Arthur Donohue‐Rolfe, Saul Tzipori, Rembert Pieper	38
17	Investigating the genome diversity of B. cereus and evolutionary aspects of B. anthracis emergence 2011 ·Genomics ·L. Papazisi, David A. Rasko, (unknown), (unknown), (unknown), (unknown), Jia Liu, Tatiana Dracheva, John Braisted, Shamira J. Shallom, Behnam Jarrahi, Erik Snesrud, Susie Ahn, Qiang Sun, (unknown), Ole Andreas Økstad, Anne‐Brit Kolstø, Robert Fleischmann, Scott N. Peterson	20
18	Role ofluxSinBacillus anthracisgrowth and virulence factor expression 2010 ·Virulence ·Marcus B. Jones, Scott N. Peterson, (unknown), John Braisted, Behnam Jarrahi, Kenneth Shatzkes, Dacheng Ren, Thomas K. Wood, Martin J. Blaser	21
19	Proteomic Analysis of Laser-Captured Paraffin-Embedded Tissues: A Molecular Portrait of Head and Neck Cancer Progression 2008 ·Clinical Cancer Research ·Vyomesh Patel, Brian L. Hood, Alfredo Molinolo, Norman H. Lee, Thomas P. Conrads, John Braisted, David B. Krizman, Timothy D. Veenstra, J. Silvio Gutkind	153
20	Identification of Pax5 as a Target of MTA1 in B-Cell Lymphomas 2007 ·Cancer Research ·Seetharaman Balasenthil, Anupama E. Gururaj, Amjad H. Talukder, Rozita Bagheri‐Yarmand, (unknown), Brian J. Haas, John Braisted, Insun Kim, Norman H. Lee, Rakesh Kumar	61

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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