Ambrish Roy

15.6k citations

21 papers · 7.5k indexed · 4 hit papers · h-index 17

Impact in

Molecular Biology top 1%
- Protein Structure and Dynamics
- RNA and protein synthesis mechanisms
- Machine Learning in Bioinformatics
- vaccines and immunoinformatics approaches
- Genomics and Phylogenetic Studies
Computational Theory and Mathematics top 0.5%
- Computational Drug Discovery Methods

Papers in

Computational Theory and Mathematics 8
- Computational Drug Discovery Methods 8
Pharmacology 6
- Microbial Natural Products and Biosynthesis 6

Co-authors: Yang Zhang Alper Küçükural Jianyi Yang Jeffrey Skolnick Dong XuJian ZhangBharath Srinivasan Hongyi Zhou
Journals: Bioinformatics (2 papers)Journal of Visualized Experiments (2 papers)Nucleic Acids Research (2 papers)Journal of Pharmaceutical Sciences (1 paper)Journal of Proteome Research (1 paper)
Partner nations: United States India Switzerland

In The Last Decade

Ambrish Roy

21 papers receiving 7.4k citations

Hit Papers

align trajectories log scale

Protein–ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment 2013 · 747 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2013 Bioinformatics
2012 Nucleic Acids Research
2012 Nucleic Acids Research
2010 Nature Protocols

Peers

Countries citing papers authored by Ambrish Roy

Since Specialization

Citations

This map shows the geographic impact of Ambrish Roy's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ambrish Roy with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ambrish Roy more than expected).

Fields of papers citing papers by Ambrish Roy

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ambrish Roy. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ambrish Roy. The network helps show where Ambrish Roy may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Ambrish Roy, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Ambrish Roy Line = papers co-authored together Ambrish Roy links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	QAUST: Protein Function Prediction Using Structure Similarity, Protein Interaction, and Functional Motifs Genomics Proteomics & Bioinformatics ·Fatima Zohra Smaili, Shuye Tian, Ambrish Roy, Meshari Alazmi, Stefan T. Arold, S. Mukherjee, P. Scott Hefty, Wei Chen, Xin Gao	2021	16
2	Chemical space of Escherichia coli dihydrofolate reductase inhibitors: New approaches for discovering novel drugs for old bugs Medicinal Research Reviews ·Bharath Srinivasan, Gomez Martinez Miguel, Ambrish Roy, Hongyi Zhou, Jeffrey Skolnick	2018	32
3	Brain activity patterns in high-throughput electrophysiology screen predict both drug efficacies and side effects Nature Communications ·Peter M. Eimon, Mostafa Ghannad‐Rezaie, Gianluca De Rienzo, Amin Allalou, Maria do Carmo A. M Meira, Mu Gao, Ambrish Roy, Jeffrey Skolnick, Mehmet Fatih Yanik	2018	51
4	Implications of the small number of distinct ligand binding pockets in proteins for drug discovery, evolution and biochemical function Bioorganic & Medicinal Chemistry Letters ·Jeffrey Skolnick, Mu Gao, Ambrish Roy, Bharath Srinivasan, Hongyi Zhou	2015	24
5	PoLi: A Virtual Screening Pipeline Based on Template Pocket and Ligand Similarity Journal of Chemical Information and Modeling ·Ambrish Roy, Bharath Srinivasan, Jeffrey Skolnick	2015	34
6	CANDO and the infinite drug discovery frontier Drug Discovery Today ·Mark Minie, Gaurav Chopra, Geetika Sethi, Jeremy A. Horst, George White, Ambrish Roy, Kaushik Hatti, Ram Samudrala	2014	42
7	LIGSIFT: an open-source tool for ligand structural alignment and virtual screening Bioinformatics ·Ambrish Roy, Jeffrey Skolnick	2014	41
8	Protein–ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment Bioinformatics ·Jianyi Yang, Ambrish Roy, Yang Zhang Hit paper breakdown →	2013	747
9	COFACTOR: an accurate comparative algorithm for structure-based protein function annotation Nucleic Acids Research ·Ambrish Roy, Jianyi Yang, Yang Zhang Hit paper breakdown →	2012	556
10	BioLiP: a semi-manually curated database for biologically relevant ligand–protein interactions Nucleic Acids Research ·Jianyi Yang, Ambrish Roy, Yang Zhang Hit paper breakdown →	2012	566
11	Recognizing Protein-Ligand Binding Sites by Global Structural Alignment and Local Geometry Refinement Structure ·Ambrish Roy, Yang Zhang	2012	92
12	Automated protein structure modeling in CASP9 by I‐TASSER pipeline combined with QUARK‐based ab initio folding and FG‐MD‐based structure refinement Proteins Structure Function and Bioinformatics ·Dong Xu, Jian Zhang, Ambrish Roy, Yang Zhang	2011	121
13	A Protocol for Computer-Based Protein Structure and Function Prediction Journal of Visualized Experiments ·Ambrish Roy, Dong Xu, Andrea Perrotta, Yang Zhang	2011	61
14	Parkin, A Top Level Manager in the Cells Sanitation Department PubMed ·Carolyn A. Rankin, Ambrish Roy, Yang Zhang, Mark L. Richter	2011	15
15	Functional Implications of Structural Predictions for Alternative Splice Proteins Expressed in Her2/neu–Induced Breast Cancers Journal of Proteome Research ·Rajasree Menon, Ambrish Roy, S. Mukherjee, Е.Л. СТРИЖАКОВ, Yang Zhang, Gilbert S. Omenn	2011	40
16	I-TASSER: a unified platform for automated protein structure and function prediction Nature Protocols ·Ambrish Roy, Alper Küçükural, Yang Zhang Hit paper breakdown →	2010	5019
17	A three‐dimensional model of the U1 small nuclear ribonucleoprotein particle Entomological Research ·Jason A. Somarelli, P Oggero, Ambrish Roy, Yang Zhang, René J. Herrera	2010	1
18	HAAD: A Quick Algorithm for Accurate Prediction of Hydrogen Atoms in Protein Structures PLoS ONE ·Yunqi Li, Ambrish Roy, Yang Zhang	2009	26
19	The Role of Covalent Dimerization on the Physical and Chemical Stability of the EC1 Domain of Human E-Cadherin Journal of Pharmaceutical Sciences ·Malak Al-Quaiti, Khadija Rudloff, Ahmed Boukdir, Ambrish Roy, Gennady M. Verkhivker, Jennifer S. Laurence, C. Russell Middaugh, Teruna J. Siahaan	2009	8
20	Molecular and Structural Basis of Drift in the Functions of Closely-Related Homologous Enzyme Domains: Implications for Function Annotation Based on Homology Searches and Structural Genomics In Silico Biology ·Ambrish Roy, Narayanaswamy Srinivasan, V. S. Gowri	2009	6

About Ambrish Roy

Ambrish Roy is a scholar working on Computational Theory and Mathematics, Pharmacology, Molecular Biology, Molecular Medicine and Materials Chemistry, having authored 21 papers that have together received 7.5k indexed citations. Recurring topics across this work include Protein Structure and Dynamics (14 papers), Computational Drug Discovery Methods (8 papers), Microbial Natural Products and Biosynthesis (6 papers), Microbial Metabolic Engineering and Bioproduction (6 papers), Bioinformatics and Genomic Networks (5 papers), RNA and protein synthesis mechanisms (4 papers), Enzyme Structure and Function (3 papers) and Machine Learning in Bioinformatics (2 papers). The work is most often cited by research in Molecular Biology (5.2k citations), Computational Theory and Mathematics (928 citations), Microbiology (311 citations), Biotechnology (358 citations) and Infectious Diseases (573 citations). Ambrish Roy has collaborated with scholars based in United States, India and Switzerland. Frequent co-authors include Yang Zhang, Alper Küçükural, Jianyi Yang, Jeffrey Skolnick, Dong Xu, Jian Zhang, Bharath Srinivasan, Hongyi Zhou, Mu Gao and Yunqi Li. Their work appears in journals such as Bioinformatics, Journal of Visualized Experiments, Nucleic Acids Research, Journal of Pharmaceutical Sciences and Journal of Proteome Research.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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