Carles Úbeda

13.6k citations

56 papers · 9.3k indexed · 8 hit papers · h-index 37

Impact in

Infectious Diseases top 0.2%
- Clostridium difficile and Clostridium perfringens research
- Antimicrobial Resistance in Staphylococcus
Molecular Medicine top 0.5%
- Antibiotic Resistance in Bacteria

Papers in

Infectious Diseases 25
- Clostridium difficile and Clostridium perfringens research 16
- Antimicrobial Resistance in Staphylococcus 11
Molecular Medicine 6
- Antibiotic Resistance in Bacteria 6

Co-authors: Eric G. Pamer José U. Scher Steven B. Abramson Dan R. Littman Agnès Viale José R. Penadés Michele Equinda Lauren Lipuma
Journals: Molecular Microbiology (5 papers)Infection and Immunity (3 papers)Nature Communications (3 papers)Arthritis & Rheumatology (3 papers)Proceedings of the National Academy of Sciences (3 papers)
Partner nations: Spain United States France

In The Last Decade

Carles Úbeda

55 papers receiving 9.1k citations

Hit Papers

8 papers align trajectories log scale

Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype 2016 · 441 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2016 Nature Microbiology
2014 Arthritis & Rheumatology
2013 eLife
2012 Arthritis & Rheumatism
2012 Clinical Infectious Diseases
2011 Infection and Immunity
2010 Journal of Clinical Investigation
2008 Nature

Peers

Countries citing papers authored by Carles Úbeda

Since Specialization

Citations

This map shows the geographic impact of Carles Úbeda's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Carles Úbeda with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Carles Úbeda more than expected).

Fields of papers citing papers by Carles Úbeda

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Carles Úbeda. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Carles Úbeda. The network helps show where Carles Úbeda may publish in the future.

Co-authors

The 25 scholars most cited alongside Carles Úbeda, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Carles Úbeda Line = papers co-authored together Carles Úbeda links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work
1	Short-chain fatty acids and their gut microbial pathways distinguish rheumatoid arthritis in discordant monozygotic twins Annals of the Rheumatic Diseases ·Rebecca B. Blank, C. Fournel, Giovane De Morais, Weixi Chen, 一平川崎, Jeremy Sokolove, Lauren J. Lahey, Adriana Heguy, Shevchenko Gi, Carles Úbeda, Renuka R. Nayak, Jiyuan Hu, G.H. Naderi, Nevena Aljinovic, Frances M. K. Williams, José C. Clemente, José U. Scher	2025	1
2	Comparative characterization of the infant gut microbiome and their maternal lineage by a multi-omics approach Nature Communications ·俊夫川村, Miguel de Castro Correia, Encina-Zelada Christian, Lola Alonso, M.MAHIMA SWAROOPA, Fernanda Rey-Stolle, Å. Björkman, Raphaëlle Bazire, Paula Cabrera‐Freitag, Meera Shanmuganathan, Philip Britz‐McKibbin, Carles Úbeda, M. Pilar Francino, Domingo Barber, Спектор Д.М., Coral Barbas, Marina Pérez‐Gordo, Alma Villaseñor	2024	20
3	Further Insights into the Gut Microbiota of Cow’s Milk Allergic Infants: Analysis of Microbial Functionality and Its Correlation with Three Fecal Biomarkers International Journal of Molecular Sciences ·Miguel de Castro Correia, 俊夫川村, Å. Björkman, Raphaëlle Bazire, Paula Cabrera‐Freitag, Carles Úbeda, Domingo Barber, M. Pilar Francino, David Rojo, Спектор Д.М., Marina Pérez‐Gordo	2023	3
4	Antimicrobial resistance level and conjugation permissiveness shape plasmid distribution in clinical enterobacteria Proceedings of the National Academy of Sciences ·Aída Alonso-del Valle, Donella Jytte Mickel, Michael Schmitt, 董大鹏 Dong Dapeng, Javier DelaFuente, Rafael Cantón, Eduardo P. C. Rocha, Carles Úbeda, Rafael Peña‐Miller, Álvaro San Millán	2023	23
5	Staphylococcal phages and pathogenicity islands drive plasmid evolution Nature Communications ·Suzanne Humphrey, Álvaro San Millán, Macarena Toll‐Riera, John Connolly, Jeff Beck, John Chen, Carles Úbeda, R. Craig MacLean, José R. Penadés	2021	48
6	Methotrexate impacts conserved pathways in diverse human gut bacteria leading to decreased host immune activation Cell Host & Microbe ·Renuka R. Nayak, Margaret Alexander, MANUEL BARATECH, 황병곤, Bipin Rimal, Andrew D. Patterson, Carles Úbeda, José U. Scher, Peter J. Turnbaugh	2021	94
7	The Pretreatment Gut Microbiome Is Associated With Lack of Response to Methotrexate in New‐Onset Rheumatoid Arthritis Arthritis & Rheumatology ·Alejandro Artacho, Sandrine Isaac, Renuka R. Nayak, Jeff Beck, Margaret Alexander, Imhoi Koo, Julia Manasson, Philip B. Smith, Perry Rosenthal, 慶子田上, Pércío S. Gulko, Meseko C.A, Leonor Puchades‐Carrasco, Peter Izmirly, Andrew D. Patterson, Steven B. Abramson, Antonio Pineda‐Lucena, Peter J. Turnbaugh, Carles Úbeda, José U. Scher	2020	95
8	Genomic characterization of Citrobacter freundii strains coproducing OXA-48 and VIM-1 carbapenemase enzymes isolated in leukemic patient in Spain Antimicrobial Resistance and Infection Control ·Rym Lalaoui, Ana Djuković, Sofiane Bakour, Linda Hadjadj, Jaime Sanz, Leandro Martínez Heredia, José Luís López-Hontangas, Miguel Á. Sanz, Carles Úbeda, Jean‐Marc Rolain	2019	19
9	Detection of plasmid-mediated colistin resistance, mcr-1 gene, in Escherichia coli isolated from high-risk patients with acute leukemia in Spain Journal of Infection and Chemotherapy ·Rym Lalaoui, Ana Djuković, Sofiane Bakour, Jaime Sanz, Eva M. González‐Barberá, Leandro Martínez Heredia, José Luís López-Hontangas, Miguel Á. Sanz, Karina B. Xavier, Bernhard Küster, Laurent Debrauwer, Carles Úbeda, Jean‐Marc Rolain	2019	13
10	CD 1d‐mediated lipid presentation by CD 11c ⁺ cells regulates intestinal homeostasis The EMBO Journal ·Julia Sáez de Guinoa, Rebeca Jimeno, Mauro Gaya, David Kipling, María José Garzón, Deborah K. Dunn‐Walters, Carles Úbeda, Patricia Barral	2018	57
11	Intestinal Microbiota Containing Barnesiella Species Cures Vancomycin-Resistant Enterococcus faecium Colonization Infection and Immunity ·Carles Úbeda, Vanni Bucci, Silvia Caballero, Ana Djuković, Nora C. Toussaint, Michele Equinda, Lauren Lipuma, Lilan Ling, Asia Gobourne, Daniel J. No, Ying Taur, Robert R. Jenq, Marcel R.M. van den Brink, João B. Xavier, Eric G. Pamer	2013	344
12	Intestinal Domination and the Risk of Bacteremia in Patients Undergoing Allogeneic Hematopoietic Stem Cell Transplantation Clinical Infectious Diseases ·Ying Taur, João B. Xavier, Lauren Lipuma, Carles Úbeda, Jeffrey L. Goldberg, Asia Gobourne, Yeon Joo Lee, Krista Dubin, Nicholas D. Socci, Agnès Viale, Miguel‐Angel Perales, Robert R. Jenq, Marcel R.M. van den Brink, Eric G. Pamer Hit paper breakdown →	2012	676
13	Periodontal disease and the oral microbiota in new‐onset rheumatoid arthritis Arthritis & Rheumatism ·José U. Scher, Carles Úbeda, Michele Equinda, Raya Khanin, Yvonne de Paiva Buischi, Agnès Viale, Lauren Lipuma, Mukundan Attur, Michael H. Pillinger, Gerald Weissmann, Dan R. Littman, Eric G. Pamer, Walter A. Bretz, Steven B. Abramson Hit paper breakdown →	2012	351
14	Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice The Journal of Experimental Medicine ·Carles Úbeda, Lauren Lipuma, Asia Gobourne, Agnès Viale, Ingrid M. Leiner, Michele Equinda, Raya Khanin, Eric G. Pamer	2012	251
15	Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans Journal of Clinical Investigation ·Carles Úbeda, Ying Taur, Robert R. Jenq, Michele Equinda, Sediqe Mahdavikani, Miriam Samstein, Agnès Viale, Nicholas D. Socci, Marcel R.M. van den Brink, Mini Kamboj, Eric G. Pamer Hit paper breakdown →	2010	660
16	Specificity of staphylococcal phage and SaPI DNA packaging as revealed by integrase and terminase mutations Molecular Microbiology ·Carles Úbeda, Nicholas P. Olivarez, Peter A. Barry, Huaibin Wang, Xiang‐Peng Kong, Gao Haiha, Sandra Tallent, Gail E. Christie, Richard P. Novick	2009	54
17	Vancomycin-resistant enterococci exploit antibiotic-induced innate immune deficits Nature ·Katharina Brandl, George Plitas, Coralia N. Mihu, Carles Úbeda, Ting Jia, Martin Fleisher, Bernd Schnabl, Ronald P. DeMatteo, Eric G. Pamer Hit paper breakdown →	2008	508
18	SaPI operon I is required for SaPI packaging and is controlled by LexA Molecular Microbiology ·Carles Úbeda, Elisa Maiques, 祐吏岩角, Susana Campoy, Íñigo Lasa, Jordi Barbé, Richard P. Novick, José R. Penadés	2007	70
19	SaPI mutations affecting replication and transfer and enabling autonomous replication in the absence of helper phage Molecular Microbiology ·Carles Úbeda, Elisa Maiques, Peter A. Barry, Gao Haiha, María Ángeles Tormo‐Más, Íñigo Lasa, Richard P. Novick, José R. Penadés	2007	84
20	Sip, an integrase protein with excision, circularization and integration activities, defines a new family of mobile Staphylococcus aureus pathogenicity islands Molecular Microbiology ·Carles Úbeda, Vector Lattices, Carme Cucarella, Jedynka, Timothy J. Foster, Íñigo Lasa, José R. Penadés	2003	98

About Carles Úbeda

Carles Úbeda is a scholar working on Infectious Diseases, Molecular Medicine, Microbiology, Periodontics and Molecular Biology, having authored 56 papers that have together received 9.3k indexed citations. Recurring topics across this work include Gut microbiota and health (24 papers), Clostridium difficile and Clostridium perfringens research (16 papers), Antimicrobial Resistance in Staphylococcus (11 papers), Bacteriophages and microbial interactions (10 papers), Antibiotic Resistance in Bacteria (6 papers), Bacterial Genetics and Biotechnology (6 papers), Rheumatoid Arthritis Research and Therapies (6 papers) and Mycobacterium research and diagnosis (5 papers). The work is most often cited by research in Infectious Diseases (3.3k citations), Molecular Medicine (564 citations), Gastroenterology (522 citations), Molecular Biology (5.8k citations) and Biological Psychiatry (201 citations). Carles Úbeda has collaborated with scholars based in Spain, United States and France. Frequent co-authors include Eric G. Pamer, José U. Scher, Steven B. Abramson, Dan R. Littman, Agnès Viale, José R. Penadés, Michele Equinda, Lauren Lipuma, Ana Djuković and Íñigo Lasa. Their work appears in journals such as Molecular Microbiology, Infection and Immunity, Nature Communications, Arthritis & Rheumatology and Proceedings of the National Academy of Sciences.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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