Bérénice Batut

7.4k total citations · 2 hit papers
17 papers, 2.9k citations indexed

About

Bérénice Batut is a scholar working on Molecular Biology, Information Systems and Management and Ecology. According to data from OpenAlex, Bérénice Batut has authored 17 papers receiving a total of 2.9k indexed citations (citations by other indexed papers that have themselves been cited), including 14 papers in Molecular Biology, 4 papers in Information Systems and Management and 2 papers in Ecology. Recurrent topics in Bérénice Batut's work include Genomics and Phylogenetic Studies (7 papers), Scientific Computing and Data Management (4 papers) and RNA modifications and cancer (3 papers). Bérénice Batut is often cited by papers focused on Genomics and Phylogenetic Studies (7 papers), Scientific Computing and Data Management (4 papers) and RNA modifications and cancer (3 papers). Bérénice Batut collaborates with scholars based in Germany, France and United States. Bérénice Batut's co-authors include Marius van den Beek, Nicola Soranzo, Björn Grüning, Saskia Hiltemann, Dave Clements, Anton Nekrutenko, Martin Čech, John Chilton, Helena Rasche and Jennifer Hillman‐Jackson and has published in prestigious journals such as Nucleic Acids Research, Nature Neuroscience and Nature Reviews Microbiology.

In The Last Decade

Bérénice Batut

16 papers receiving 2.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

2018 2.4k citations Enis Afgan, Dannon Baker et al. Nucleic Acids Research profile →
Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine

2022 163 citations Omar Mossad, Bérénice Batut et al. Nature Neuroscience profile →

Peers

Countries citing papers authored by Bérénice Batut

Since Specialization

Citations

This map shows the geographic impact of Bérénice Batut's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Bérénice Batut with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Bérénice Batut more than expected).

Fields of papers citing papers by Bérénice Batut

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Bérénice Batut. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Bérénice Batut. The network helps show where Bérénice Batut may publish in the future.

Co-authorship network of co-authors of Bérénice Batut

This figure shows the co-authorship network connecting the top 25 collaborators of Bérénice Batut. A scholar is included among the top collaborators of Bérénice Batut based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Bérénice Batut. Bérénice Batut is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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17 of 17 papers shown

#	Work	Indexed citations
1	Clouds influence the functioning of airborne microorganisms 2025 ·Biogeosciences ·(unknown), Florent Rossi, Muriel Joly, Engy Nasr, Bérénice Batut, François Enault, Barbara Ervens, Pierre Amato	0
2	Integrative meta-omics in Galaxy and beyond 2023 ·Environmental Microbiome ·(unknown), Francesco Delogu, Praveen Kumar, Benoît J. Kunath, Bérénice Batut, Subina Mehta, James E. Johnson, Björn Grüning, Phillip B. Pope, Pratik Jagtap, Timothy J. Griffin, Magnus Ø. Arntzen	9
3	The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond 2023 ·Genome Research ·Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche, Martin Čech, Peter Cock, Björn Grüning, Anton Nekrutenko	4
4	FAIR and Scalable Education 2023 ·(unknown), Bérénice Batut, Teresa Müller	1
5	Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine breakdown → 2022 ·Nature Neuroscience ·Omar Mossad, Bérénice Batut, Bahtiyar Yılmaz, Nikolaos Dokalis, Charlotte Mezö, Elisa Nent, (unknown), M. Mayer, Feres José Mocayar Marón, Joerg M. Buescher, Mercedes Gomez de Agüero, (unknown), Tim Lämmermann, Andrew J. Macpherson, Stephanie C. Ganal‐Vonarburg, Rolf Backofen, Daniel Erny, Marco Prinz, Thomas Blank	163
6	Fostering accessible online education using Galaxy as an e-learning platform 2021 ·PLoS Computational Biology ·Beatriz Serrano‐Solano, Melanie Christine Föll, Cristóbal Gallardo Alba, Anika Erxleben, Helena Rasche, Saskia Hiltemann, Matthias Fahrner, Mark Dunning, Marcel H. Schulz, Beáta Scholtz, Dave Clements, Anton Nekrutenko, Bérénice Batut, Björn Grüning	8
7	RNA-Seq Data Analysis in Galaxy 2021 ·Methods in molecular biology ·Bérénice Batut, Marius van den Beek, Maria Doyle, Nicola Soranzo	32
8	The RNA workbench 2.0: next generation RNA data analysis 2019 ·Nucleic Acids Research ·Jörg Fallmann, Pavankumar Videm, Andrea Bagnacani, Bérénice Batut, Maria Doyle, (unknown), Florian Eggenhofer, Peter F. Stadler, Rolf Backofen, Björn Grüning	12
9	ASaiM: a Galaxy-based framework to analyze microbiota data 2018 ·GigaScience ·Bérénice Batut, Kévin Gravouil, (unknown), Saskia Hiltemann, Jean‐François Brugère, Éric Peyretaillade, Pierre Peyret	25
10	The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update breakdown → 2018 ·Nucleic Acids Research ·Enis Afgan, Dannon Baker, Bérénice Batut, Marius van den Beek, Dave Bouvier, Martin Čech, John Chilton, Dave Clements, Nate Coraor, Björn Grüning, Aysam Guerler, Jennifer Hillman‐Jackson, Saskia Hiltemann, Vahid Jalili, Helena Rasche, Nicola Soranzo, Jeremy Goecks, James Taylor, Anton Nekrutenko, Daniel Blankenberg	2447
11	Environmental Pollutant Benzo[a]Pyrene Impacts the Volatile Metabolome and Transcriptome of the Human Gut Microbiota 2017 ·Frontiers in Microbiology ·(unknown), Jérémy Ratel, Sylvain Denis, Bérénice Batut, Réjane Beugnot, Éric Peyretaillade, Erwan Engel, Pierre Peyret	52
12	The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy 2017 ·Nucleic Acids Research ·Björn Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen C. Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen	29
13	ENASearch: A Python library for interacting with ENA's API 2017 ·The Journal of Open Source Software ·Bérénice Batut, Björn Grüning	1
14	Group abundances of UniRef50 gene families obtained with HUMAnN2 to Gene Ontology (GO) slim terms with relative abundances: release v1.2.0 2016 ·Zenodo (CERN European Organization for Nuclear Research) ·Bérénice Batut	1
15	Reductive genome evolution at both ends of the bacterial population size spectrum 2014 ·Nature Reviews Microbiology ·Bérénice Batut, Carole Knibbe, Gabriel Marais, Vincent Daubin	118
16	An alife game to teach evolution of antibiotic resistance 2013 ·Guillaume Beslon, Bérénice Batut, David Parsons, Dominique Schneider, Carole Knibbe	1
17	In silico experimental evolution: a tool to test evolutionary scenarios 2013 ·BMC Bioinformatics ·Bérénice Batut, David P. Parsons, Stephan Fischer, Guillaume Beslon, Carole Knibbe	25

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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