Daniel Blankenberg

18.5k total citations · 6 hit papers
50 papers, 8.7k citations indexed

About

Daniel Blankenberg is a scholar working on Molecular Biology, Information Systems and Management and Artificial Intelligence. According to data from OpenAlex, Daniel Blankenberg has authored 50 papers receiving a total of 8.7k indexed citations (citations by other indexed papers that have themselves been cited), including 36 papers in Molecular Biology, 12 papers in Information Systems and Management and 6 papers in Artificial Intelligence. Recurrent topics in Daniel Blankenberg's work include Genomics and Phylogenetic Studies (14 papers), Scientific Computing and Data Management (12 papers) and Gene expression and cancer classification (8 papers). Daniel Blankenberg is often cited by papers focused on Genomics and Phylogenetic Studies (14 papers), Scientific Computing and Data Management (12 papers) and Gene expression and cancer classification (8 papers). Daniel Blankenberg collaborates with scholars based in United States, Germany and India. Daniel Blankenberg's co-authors include Anton Nekrutenko, James Taylor, Enis Afgan, Gregory Von Kuster, Dave Clements, Jeremy Goecks, Jennifer Hillman‐Jackson, Dannon Baker, Dave Bouvier and Nate Coraor and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Communications.

In The Last Decade

Daniel Blankenberg

48 papers receiving 8.6k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

2018 2.4k citations Dannon Baker, Marius van den Beek et al. profile →
Galaxy: A platform for interactive large-scale genome analysis

2005 1.5k citations Belinda Giardine, Cathy Riemer et al. Genome Research profile →
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

2016 1.5k citations Dannon Baker, Marius van den Beek et al. profile →
Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists

2010 1.1k citations Daniel Blankenberg, Anton Nekrutenko et al. profile →
Manipulation of FASTQ data with Galaxy

2010 520 citations Daniel Blankenberg, James Taylor et al. Bioinformatics profile →
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update

2020 316 citations Daniel Blankenberg, James Taylor et al. profile →

Peers

Countries citing papers authored by Daniel Blankenberg

Since Specialization

Citations

This map shows the geographic impact of Daniel Blankenberg's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Daniel Blankenberg with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Daniel Blankenberg more than expected).

Fields of papers citing papers by Daniel Blankenberg

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Daniel Blankenberg. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Daniel Blankenberg. The network helps show where Daniel Blankenberg may publish in the future.

Co-authorship network of co-authors of Daniel Blankenberg

This figure shows the co-authorship network connecting the top 25 collaborators of Daniel Blankenberg. A scholar is included among the top collaborators of Daniel Blankenberg based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Daniel Blankenberg. Daniel Blankenberg is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Feature selection with vector-symbolic architectures: a case study on microbial profiles of shotgun metagenomic samples of colorectal cancer 2025 ·Briefings in Bioinformatics ·Fabio Cumbo, (unknown), Emanuel Weitschek, Daniel Blankenberg	0
2	Vertical distribution of particulate matter near a national highway and influence of roadside tree canopy: A drone/UAV based study 2024 ·Atmospheric Environment ·(unknown), Aditya Kumar Patra, Jayadev Joshi, Daniel Blankenberg, (unknown), (unknown), Xuhui Lee	6
3	How can quantum computing be applied in clinical trial design and optimization? 2024 ·Trends in Pharmacological Sciences ·(unknown), (unknown), Mehmet Şahin, (unknown), Anh Pham, Eunyoung Kim, (unknown), (unknown), Laxmi Parida, Jan Lukas Robertus, Hideaki Kawaguchi, (unknown), Daniel Blankenberg	13
4	A Perspective on Protein Structure Prediction Using Quantum Computers 2024 ·Journal of Chemical Theory and Computation ·(unknown), Bryan Raubenolt, Fabio Cumbo, Jayadev Joshi, Frank P. DiFilippo, (unknown), Daniel Blankenberg, (unknown)	21
5	Sphingolipid biosynthesis is essential for metabolic rewiring during T _H 17 cell differentiation 2024 ·Science Advances ·(unknown), (unknown), Si-Hung Le, VIJAY NAGAMPALLI, Stephen D. Fox, Baktiar Karim, (unknown), Daniel Blankenberg, Þorkell Andrésson, Takeshi Bamba, (unknown), Jairaj Acharya	10
6	Homozygous EPRS1 missense variant causing hypomyelinating leukodystrophy-15 alters variant-distal mRNA m6A site accessibility 2024 ·Nature Communications ·Debjit Khan, Iyappan Ramachandiran, K.I. Vasu, Arnab China, (unknown), Fabio Cumbo, Dalia Halawani, Fulvia Terenzi, (unknown), (unknown), Gregory Costain, Susan Blaser, Amanda Carnevale, Valentin Gogonea, Ranjan Dutta, Daniel Blankenberg, Grace Yoon, Paul L. Fox	2
7	Generalized open-source workflows for atomistic molecular dynamics simulations of viral helicases 2024 ·GigaScience ·Bryan Raubenolt, Daniel Blankenberg	1
8	Contemporary Antiretroviral Therapy Dysregulates Iron Transport and Augments Mitochondrial Dysfunction in HIV-Infected Human Microglia and Neural-Lineage Cells 2023 ·International Journal of Molecular Sciences ·Harpreet Kaur, (unknown), David Alvarez-Carbonell, (unknown), VIJAY NAGAMPALLI, Daniel Blankenberg, Todd Hulgan, Mariana Gerschenson, Jonathan Karn, Siddhesh Aras, Asha Kallianpur	8
9	CNV-ClinViewer: enhancing the clinical interpretation of large copy-number variants online 2023 ·Bioinformatics ·(unknown), Eduardo Pérez‐Palma, Tobias Brünger, (unknown), Konrad Platzer, (unknown), Ludovica Montanucci, Allan Bayat, (unknown), Ryan L. Collins, Michael E. Talkowski, Daniel Blankenberg, Rikke S. Møller, Johannes R. Lemke, Michael Nothnagel, Patrick May, Dennis Lal	8
10	hdlib: A Python library for designing Vector-SymbolicArchitectures 2023 ·The Journal of Open Source Software ·Fabio Cumbo, Emanuel Weitschek, Daniel Blankenberg	2
11	Phosphorylation-mediated regulation of the Bacillus anthracis phosphoglycerate mutase by the Ser/Thr protein kinase PrkC 2023 ·Biochemical and Biophysical Research Communications ·R Virmani, (unknown), Jayadev Joshi, (unknown), H.C. Joshi, Andaleeb Sajid, (unknown), (unknown), Bishwajit Kundu, Daniel Blankenberg, Virginie Molle, Yogendra Singh, Gunjan Arora	3
12	Delivery of ceramide phosphoethanolamine lipids to the cleavage furrow through the endocytic pathway is essential for male meiotic cytokinesis 2022 ·PLoS Biology ·(unknown), Si-Hung Le, Valentina Baena, VIJAY NAGAMPALLI, Adam Harned, Kunio Nagashima, Daniel Blankenberg, (unknown), Kedar Narayan, Takeshi Bamba, U. Rajendra Acharya, Jairaj Acharya	8
13	PDAUG: a Galaxy based toolset for peptide library analysis, visualization, and machine learning modeling 2022 ·BMC Bioinformatics ·Jayadev Joshi, Daniel Blankenberg	9
14	SimText: a text mining framework for interactive analysis and visualization of similarities among biomedical entities 2021 ·Bioinformatics ·(unknown), Eduardo Pérez‐Palma, Sarah M. Schumacher, Jarrod E. Dalton, Costin Leu, Daniel Blankenberg, Dennis Lal	6
15	No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics 2020 ·PLoS Pathogens ·Dannon Baker, Marius van den Beek, Daniel Blankenberg, Dave Bouvier, John Chilton, Nate Coraor, Frederik Coppens, Ignacio Eguinoa, Simon Gladman, Björn Grüning, (unknown), Delphine Larivière, Andrew Lonie, Sergei L. Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver	17
16	Online Resources for Genomic Analysis Using High-Throughput Sequencing 2015 ·Cold Spring Harbor Protocols ·Daniel Blankenberg, James Taylor, Anton Nekrutenko	5
17	Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA 2014 ·Proceedings of the National Academy of Sciences ·Boris Rebolledo‐Jaramillo, Marcia Shu‐Wei Su, Nicholas Stoler, Jennifer A. McElhoe, Benjamin Dickins, Daniel Blankenberg, Thorfinn Sand Korneliussen, Francesca Chiaromonte, Rasmus Nielsen, Mitchell M. Holland, Ian M. Paul, Anton Nekrutenko, Kateryna D. Makova	176
18	Analysis of Next-Generation Sequencing Data Using Galaxy 2014 ·Methods in molecular biology ·Daniel Blankenberg, Jennifer Hillman‐Jackson	30
19	Quantitative sequence-function relationships in proteins based on gene ontology 2007 ·BMC Bioinformatics ·Vineet Sangar, Daniel Blankenberg, Naomi Altman, Arthur M. Lesk	68
20	Galaxy: A platform for interactive large-scale genome analysis breakdown → 2005 ·Genome Research ·Belinda Giardine, Cathy Riemer, Ross C. Hardison, Richard Burhans, Laura Elnitski, Prachi Shah, Yi Zhang, Daniel Blankenberg, István Albert, James Taylor, Webb Miller, W. James Kent, Anton Nekrutenko	1541

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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