Uwe Ohler

19.0k citations

130 papers · 10.6k indexed · 5 hit papers · h-index 53

Impact in

Cancer Research top 0.5%
- Cancer-related molecular mechanisms research
- MicroRNA in disease regulation
Molecular Biology top 0.5%
- RNA Research and Splicing
- RNA modifications and cancer
- RNA and protein synthesis mechanisms
- Genomics and Chromatin Dynamics
- Genomics and Phylogenetic Studies

Papers in

Cancer Research 30
- Cancer-related molecular mechanisms research 24
Molecular Biology 122
- RNA Research and Splicing 57
- RNA and protein synthesis mechanisms 50
- RNA modifications and cancer 47
- Genomics and Chromatin Dynamics 41
- Genomics and Phylogenetic Studies 21
- Single-cell and spatial transcriptomics 12

Co-authors: Neelanjan Mukherjee Philip N. Benfey David L. Corcoran Heinrich Niemann Thomas Tuschl Daniel Mace Jeffrey D. Nusbaum Markus Hafner
Journals: Bioinformatics (12 papers)Genome biology (12 papers)Nucleic Acids Research (9 papers)Genome Research (9 papers)Nature Communications (7 papers)
Partner nations: United States Germany United Kingdom

In The Last Decade

Uwe Ohler

129 papers receiving 10.5k citations

Hit Papers

5 papers align trajectories log scale

Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root 2023 · 86 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2023 Science
2022 Developmental Cell
2012 Nature
2011 Molecular Cell
2007 Science

Peers

Countries citing papers authored by Uwe Ohler

Since Specialization

Citations

This map shows the geographic impact of Uwe Ohler's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Uwe Ohler with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Uwe Ohler more than expected).

Fields of papers citing papers by Uwe Ohler

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Uwe Ohler. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Uwe Ohler. The network helps show where Uwe Ohler may publish in the future.

Co-authors

The 25 scholars most cited alongside Uwe Ohler, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Uwe Ohler Line = papers co-authored together Uwe Ohler links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work
1	Liam tackles complex multimodal single-cell data integration challenges Nucleic Acids Research ·Pia Rautenstrauch, Uwe Ohler	2024	3
2	Arabidopsis uses a molecular grounding mechanism and a biophysical circuit breaker to limit floral abscission signaling Proceedings of the National Academy of Sciences ·Isaiah Taylor, O. Rahul Patharkar, Medhavinee Mijar, Che‐Wei Hsu, John Baer, Chad E. Niederhuth, Uwe Ohler, Philip N. Benfey, John C. Walker	2024	2
3	Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation Science Immunology ·Ioanna Tiniakou, Pei-Feng Hsu, Lorena S. Lopez-Zepeda, Görkem Garipler, Eduardo Esteva, Nicholas M. Adams, Geunhyo Jang, Chetna Soni, Colleen M. Lau, Fan Liu, Alireza Khodadadi‐Jamayran, Tori Rodrick, Drew R. Jones, Aristotelis Tsirigos, Uwe Ohler, Mark T. Bedford, Stephen D. Nimer, Vesa Kaartinen, Esteban O. Mazzoni, Boris Reizis	2024	6
4	Stress-induced nuclear speckle reorganization is linked to activation of immediate early gene splicing The Journal of Cell Biology ·Hsu‐Min Sung, Johanna Schott, Philipp Drewe-Boß, J. Lehmann, Marius Roland Hardt, Doris Lindner, Joris Messens, Ivan Bogeski, Uwe Ohler, Georg Stoecklin	2023	12
5	Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning Nature Machine Intelligence ·Wolfgang Kopp, Altuna Akalin, Uwe Ohler	2022	19
6	The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes Cell Reports ·Görkem Garipler, Congyi Lu, Alexis Morrissey, Lorena S. Lopez-Zepeda, Yingzhen Pei, Simon E. Vidal, Ana Paula Zen Petisco Fiore, Begüm Aydın, Matthias Stadtfeld, Uwe Ohler, Shaun Mahony, Neville E. Sanjana, Esteban O. Mazzoni	2022	11
7	Cluster-independent marker feature identification from single-cell omics data using SEMITONES Nucleic Acids Research ·Anna Hendrika Cornelia Vlot, Setareh Maghsudi, Uwe Ohler	2022	2
8	A critical period of translational control during brain development at codon resolution Nature Structural & Molecular Biology ·Dermot Harnett, Mateusz C. Ambrozkiewicz, Ulrike Zinnall, Alexandra Rusanova, Екатерина Борисова, Amelie N. Drescher, Marta Couce-Iglesias, Gabriel Villamil, Rike Dannenberg, Koshi Imami, Agnieszka Münster‐Wandowski, Beatrix Fauler, Thorsten Mielke, Matthias Selbach, Markus Landthaler, C.M.T. Spahn, Victor Tarabykin, Uwe Ohler, Matthew L. Kraushar	2022	31
9	Identifying interpretable gene-biomarker associations with functionally informed kernel-based tests in 190,000 exomes Nature Communications ·Remo Monti, Pia Rautenstrauch, Mahsa Ghanbari, Alva Rani James, Matthias Kirchler, Uwe Ohler, Stefan Konigorski, Christoph Lippert	2022	9
10	Global identification of functional microRNA-mRNA interactions in Drosophila Nature Communications ·Hans‐Hermann Wessels, Svetlana Lebedeva, Antje Hirsekorn, Ricardo Wurmus, Altuna Akalin, Neelanjan Mukherjee, Uwe Ohler	2019	36
11	A Conserved Noncoding Locus Regulates Random Monoallelic Xist Expression across a Topological Boundary Molecular Cell ·Rafael Galupa, Elphège P. Nora, Rebecca Worsley-Hunt, Christel Picard, Chris Gard, Joke G. van Bemmel, Nicolas Servant, Yinxiu Zhan, Fatima El Marjou, Colin Johanneau, Patricia Diabangouaya, Agnès Le Saux, Sonia Lameiras, Juliana Pipoli da Fonseca, Friedemann Loos, Joost Gribnau, Sylvain Baulande, Uwe Ohler, Luca Giorgetti, Édith Heard	2019	45
12	SSMART: sequence-structure motif identification for RNA-binding proteins Bioinformatics ·Alina Munteanu, Neelanjan Mukherjee, Uwe Ohler	2018	16
13	Integrative classification of human coding and noncoding genes through RNA metabolism profiles Nature Structural & Molecular Biology ·Neelanjan Mukherjee, Lorenzo Calviello, Antje Hirsekorn, Stefano de Pretis, Mattia Pelizzola, Uwe Ohler	2016	134
14	FMRP targets distinct mRNA sequence elements to regulate protein expression Nature ·Manuel Ascano, Neelanjan Mukherjee, Pradeep Bandaru, Jason B. Miller, Jeffrey D. Nusbaum, David L. Corcoran, Christine Langlois, Mathias Munschauer, Scott Dewell, Markus Hafner, Zev Williams, Uwe Ohler, Thomas Tuschl Hit paper breakdown →	2012	521
15	The Drosophila Translational Control Element (TCE) Is Required for High-Level Transcription of Many Genes That Are Specifically Expressed in Testes PLoS ONE ·Rebeccah J. Katzenberger, Elizabeth A. Rach, Ashley K. Anderson, Uwe Ohler, David A. Wassarman	2012	10
16	Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome Genome biology ·Elizabeth A. Rach, Hsiang‐Yu Yuan, William H. Majoros, Pavel Tomančák, Uwe Ohler	2009	74
17	A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns Science ·Siobhán M. Brady, David A. Orlando, Ji‐Young Lee, Jean Y. Wang, Jeremy D. Koch, José R. Dinneny, Daniel Mace, Uwe Ohler, Philip N. Benfey Hit paper breakdown →	2007	897
18	Spatial preferences of microRNA targets in 3' untranslated regions BMC Genomics ·William H. Majoros, Uwe Ohler	2007	97
19	Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots Proceedings of the National Academy of Sciences ·Ji‐Young Lee, Juliette Colinas, Jean Y. Wang, Daniel Mace, Uwe Ohler, Philip N. Benfey	2006	226
20	Promoter Prediction on a Genomic Scale—TheAdhExperience Genome Research ·Uwe Ohler	2000	18

About Uwe Ohler

Uwe Ohler is a scholar working on Cancer Research, Molecular Biology, Biophysics, Aging and Plant Science, having authored 130 papers that have together received 10.6k indexed citations. Recurring topics across this work include RNA Research and Splicing (57 papers), RNA and protein synthesis mechanisms (50 papers), RNA modifications and cancer (47 papers), Genomics and Chromatin Dynamics (41 papers), Cancer-related molecular mechanisms research (24 papers), Genomics and Phylogenetic Studies (21 papers), Plant Molecular Biology Research (14 papers) and Single-cell and spatial transcriptomics (12 papers). The work is most often cited by research in Cancer Research (2.1k citations), Molecular Biology (8.6k citations), Plant Science (2.6k citations), Aging (107 citations) and Genetics (1.1k citations). Uwe Ohler has collaborated with scholars based in United States, Germany and United Kingdom. Frequent co-authors include Neelanjan Mukherjee, Philip N. Benfey, David L. Corcoran, Heinrich Niemann, Thomas Tuschl, Daniel Mace, Jeffrey D. Nusbaum, Markus Hafner, Lorenzo Calviello and William H. Majoros. Their work appears in journals such as Bioinformatics, Genome biology, Nucleic Acids Research, Genome Research and Nature Communications.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact