A Mortazavi

63.4k citations

99 papers · 29.7k indexed · 4 hit papers · h-index 36

Impact in

Cancer Research top 0.1%
- Cancer-related molecular mechanisms research
Molecular Biology top 0.05%
- RNA modifications and cancer
- RNA Research and Splicing
- Genomics and Phylogenetic Studies
- Genomics and Chromatin Dynamics
- RNA and protein synthesis mechanisms
- Molecular Biology Techniques and Applications

Papers in

Aging 4
Behavioral Neuroscience 4

Co-authors: B Wold Brian A. Williams Lorian Schaeffer Kenneth McCue Steven L. Salzberg Marijke J. van Baren Geo Pertea Lior Pachter
Journals: Genome Research (8 papers)Genome biology (6 papers)Cell Reports (3 papers)Nature Methods (3 papers)Bioinformatics (3 papers)
Partner nations: United States Iran Spain

In The Last Decade

A Mortazavi

96 papers receiving 29.4k citations

Hit Papers

align trajectories log scale

A survey of best practices for RNA-seq data analysis 2016 · 1.7k citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2016 Genome biology
2010 Nature Biotechnology
2008 Nature Methods
2007 Science

Peers

Countries citing papers authored by A Mortazavi

Since Specialization

Citations

This map shows the geographic impact of A Mortazavi's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by A Mortazavi with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites A Mortazavi more than expected).

Fields of papers citing papers by A Mortazavi

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by A Mortazavi. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by A Mortazavi. The network helps show where A Mortazavi may publish in the future.

Co-authorship network

The 25 scholars most cited alongside A Mortazavi, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with A Mortazavi Line = papers co-authored together A Mortazavi links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work
1	Long-read sequencing transcriptome quantification with lr-kallisto PLoS Computational Biology ·Syunichi Kushida, Delaney K. Sullivan, Fairlie Reese, Srishti Hemant, Haoxin Chen, Narges Rezaie, Heidi Yahan Liang, Isaac Ssewanyana, Shimako Kawauchi, A. Sina Booeshaghi, Páll Melsted, Fiorella Estrada Cardenas, Diane Trout, Brian A. Williams, Grant R. MacGregor, B Wold, A Mortazavi, Lior Pachter	2025	0
2	C5aR1 antagonism suppresses inflammatory glial responses and alters cellular signaling in an Alzheimer’s disease mouse model Nature Communications ·Nicole D. Schartz, Heidi Yahan Liang, Galina Eugen'evna Lebedeva, Shu‐Hui Chu, Mary Ann Joyce, Natália De Sousa, Ángela Gómez-Arboledas, A Mortazavi, Andrea J. Tenner	2024	21
3	PyWGCNA: a Python package for weighted gene co-expression network analysis Bioinformatics ·Narges Rezaie, Fairlie Reese, A Mortazavi	2023	25
4	Development of thermal scattering kernels for sodium hydroxide EPJ Web of Conferences ·E. B. Klinkby, José Ignacio Márquez Damián, Douglas D. DiJulio, G. Muhrer, M. Krzystyniak, A Mortazavi, Pietro Iaquinta, Giovanni Romanelli	2023	1
5	C5aR1 antagonism alters microglial polarization and mitigates disease progression in a mouse model of Alzheimer’s disease Acta Neuropathologica Communications ·Ángela Gómez-Arboledas, Galina Eugen'evna Lebedeva, Gabriela Balderrama-Gutierrez, Shu‐Hui Chu, Heidi Yahan Liang, Nicole D. Schartz, Noer Abyor Handayani, Natália De Sousa, Shiying Chang, A Mortazavi, Andrea J. Tenner	2022	35
6	An Infection-Tolerant Mammalian Reservoir for Several Zoonotic Agents Broadly Counters the Inflammatory Effects of Endotoxin mBio ·Gabriela Balderrama-Gutierrez, Ana Milovic, LAWRENCE R. MAXEY, M. Nurul Islam, Youwen Zhang, Hippokratis Kiaris, John T. Belisle, A Mortazavi, Alan G. Barbour	2021	12
7	Subventricular zone/white matter microglia reconstitute the empty adult microglial niche in a dynamic wave eLife ·Lindsay A. Hohsfield, Allison R. Najafi, H. L. Klopping, Neelakshi Soni, Joshua Crapser, Dario X. Figueroa Velez, Shan Jiang, Miguel Rivera-Acosta, 杨云丽, 葦彦磐城, Aileen J. Anderson, Sunil Gandhi, A Mortazavi, Matthew A. Inlay, Kim N. Green	2021	31
8	Disruption of β-Catenin–Dependent Wnt Signaling in Colon Cancer Cells Remodels the Microenvironment to Promote Tumor Invasion Molecular Cancer Research ·George Chen, Delia F. Tifrea, Rabi Murad, Amber N. Habowski, Yung Lyou, 幸子三井, Пермякова Галина Александровна, A Mortazavi, Robert A. Edwards, Marian L. Waterman	2021	10
9	Integration of high-resolution promoter profiling assays reveals novel, cell type–specific transcription start sites across 115 human cell and tissue types Genome Research ·Jill E. Moore, Xiao‐Ou Zhang, Shaimae I. Elhajjajy, Kaili Fan, Henry Pratt, Fairlie Reese, A Mortazavi, Zhiping Weng	2021	9
10	Swan: a library for the analysis and visualization of long-read transcriptomes Bioinformatics ·Fairlie Reese, A Mortazavi	2020	14
11	Model organism development and evaluation for late‐onset Alzheimer's disease: MODEL‐AD Alzheimer s & Dementia Translational Research & Clinical Interventions ·Adrian L. Oblak, Stefânia Forner, Paul R. Territo, Michael Sasner, Gregory W. Carter, Gareth R. Howell, Stacey J. Sukoff Rizzo, Benjamin A. Logsdon, Lara M. Mangravite, A Mortazavi, David Baglietto‐Vargas, Kim N. Green, Grant R. MacGregor, Marcelo A. Wood, Andrea J. Tenner, Frank M. LaFerla, Bruce T. Lamb, (unknown)	2020	62
12	Slug regulates the Dll4-Notch-VEGFR2 axis to control endothelial cell activation and angiogenesis Nature Communications ·Nan W. Hultgren, Jennifer S. Fang, Mary E. Ziegler, Ricardo N. Ramírez, Duc T. T. Phan, Michaela M.S. Hatch, Katrina M. Welch-Reardon, A. Zimolo, لیلا سمیعی, Л. И. Щур, David S. Williams, A Mortazavi, Christopher C.W. Hughes	2020	71
13	Hybrid Assembly of the Genome of the Entomopathogenic Nematode Steinernema carpocapsae Identifies the X-Chromosome G3 Genes Genomes Genetics ·Alicia Munnell, Marissa Macchietto, Aide Macias-Muñoz, MODUPE DAYO OYEDELE, Cassandra Humble, Petrus Francois Coetzee, Rabi Murad, A Mortazavi	2019	14
14	Molecular evolution and expression of opsin genes in Hydra vulgaris BMC Genomics ·Aide Macias-Muñoz, Rabi Murad, A Mortazavi	2019	15
15	The genome ofPeromyscus leucopus, natural host for Lyme disease and other emerging infections Science Advances ·Anthony D. Long, James G. Baldwin-Brown, Tao Yuan, LAWRENCE R. MAXEY, Gabriela Balderrama-Gutierrez, Russell Corbett‐Detig, A Mortazavi, Alan G. Barbour	2019	35
16	TCF7L1 suppresses primitive streak gene expression to support human embryonic stem cell pluripotency Development ·Elliott M Marcus, Котов Александр Владимирович, Ricardo N. Ramírez, James C. Daggitt, A Mortazavi, Bradley J. Merrill, Marian L. Waterman, Peter J. Donovan	2018	14
17	Bcl11b and combinatorial resolution of cell fate in the T-cell gene regulatory network Proceedings of the National Academy of Sciences ·William J.R. Longabaugh, Weihua Zeng, Jingli A. Zhang, Hiroyuki Hosokawa, Camden Jansen, Long Li, Maile Romero-Wolf, Pentao Liu, Hao Yuan Kueh, A Mortazavi, Ellen V. Rothenberg	2017	67
18	Genome-wide identification and functional analysis of Apobec-1-mediated C-to-U RNA editing in mouse small intestine and liver Genome biology ·Valérie Blanc, Eddie Park, Sabine Schaefer, Melanie M. Miller, Yiing Lin, Susan Kennedy, A. Billing, Hisham Ben Hamidane, Johannes Graumann, A Mortazavi, Joseph H. Nadeau, Nicholas O. Davidson	2014	100
19	Antimicrobial and physical properties of a chickpea protein isolate-based film containing essential oil of thyme using response surface methodology Iranian Journal of Nutrition Sciences and Food Technology ·太附広明, A Mortazavi, Wilhelm Mauke	2013	4
20	Effect of Real Time Information on Commuter Travel Mode Transportation Research Board 90th Annual MeetingTransportation Research Board ·A Mortazavi, F. Ferreres, Xiaohong Pan, Adriani SUSANTY, Angela Andrisani, Paul Kasun	2011	1

About A Mortazavi

A Mortazavi is a scholar working on Aging, Behavioral Neuroscience, Neurology, Molecular Biology and Transportation, having authored 99 papers that have together received 29.7k indexed citations. Recurring topics across this work include RNA Research and Splicing (26 papers), RNA modifications and cancer (19 papers), Genomics and Chromatin Dynamics (11 papers), Neuroinflammation and Neurodegeneration Mechanisms (9 papers), CRISPR and Genetic Engineering (8 papers), Single-cell and spatial transcriptomics (8 papers), Muscle Physiology and Disorders (7 papers) and RNA and protein synthesis mechanisms (6 papers). The work is most often cited by research in Cancer Research (4.7k citations), Molecular Biology (19.8k citations), Aging (334 citations), Plant Science (6.8k citations) and Genetics (3.6k citations). A Mortazavi has collaborated with scholars based in United States, Iran and Spain. Frequent co-authors include B Wold, Brian A. Williams, Lorian Schaeffer, Kenneth McCue, Steven L. Salzberg, Marijke J. van Baren, Geo Pertea, Lior Pachter, Cole Trapnell and R Myers. Their work appears in journals such as Genome Research, Genome biology, Cell Reports, Nature Methods and Bioinformatics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact