Tomer Shlomi

11.5k total citations · 3 hit papers
68 papers, 8.4k citations indexed

About

Tomer Shlomi is a scholar working on Molecular Biology, Cancer Research and Biomedical Engineering. According to data from OpenAlex, Tomer Shlomi has authored 68 papers receiving a total of 8.4k indexed citations (citations by other indexed papers that have themselves been cited), including 61 papers in Molecular Biology, 17 papers in Cancer Research and 8 papers in Biomedical Engineering. Recurrent topics in Tomer Shlomi's work include Microbial Metabolic Engineering and Bioproduction (35 papers), Bioinformatics and Genomic Networks (25 papers) and Gene Regulatory Network Analysis (16 papers). Tomer Shlomi is often cited by papers focused on Microbial Metabolic Engineering and Bioproduction (35 papers), Bioinformatics and Genomic Networks (25 papers) and Gene Regulatory Network Analysis (16 papers). Tomer Shlomi collaborates with scholars based in Israel, United States and Germany. Tomer Shlomi's co-authors include Eytan Ruppin, Roded Sharan, Joshua D. Rabinowitz, Jing Fan, Jurre J. Kamphorst, Livnat Jerby, Eyal Gottlieb, Craig B. Thompson, Jiangbin Ye and Moran N. Cabili and has published in prestigious journals such as Nature, Proceedings of the National Academy of Sciences and Nucleic Acids Research.

In The Last Decade

Tomer Shlomi

67 papers receiving 8.3k citations

Hit Papers

align trajectories sort by overperformance

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Quantitative flux analysis reveals folate-dependent NADPH production

2014 856 citations Jing Fan, Jurre J. Kamphorst et al. Nature profile →
Associating Genes and Protein Complexes with Disease via Network Propagation

2010 633 citations Eytan Ruppin, Tomer Shlomi et al. PLoS Computational Biology profile →
A key role for mitochondrial gatekeeper pyruvate dehydrogenase in oncogene-induced senescence

2013 477 citations Joanna Kaplon, Liang Zheng et al. Nature profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Tomer Shlomi Israel	40	7.0k	1.7k	1.1k	511	509	68	8.4k
Douglas S. Auld United States	42	4.8k 0.7×	1.0k 0.6×	484 0.4×	547 1.1×	1.1k 2.2×	120	7.1k
Alykhan F. Shamji United States	29	5.9k 0.8×	2.8k 1.6×	494 0.5×	220 0.4×	352 0.7×	34	8.8k
Boris Ν. Kholodenko United States	53	9.4k 1.3×	634 0.4×	485 0.4×	462 0.9×	954 1.9×	217	11.5k
Lilia Alberghina Italy	49	6.7k 0.9×	1.1k 0.6×	834 0.8×	525 1.0×	88 0.2×	286	8.6k
Chris T. Evelo Netherlands	40	4.0k 0.6×	765 0.4×	222 0.2×	706 1.4×	722 1.4×	175	6.9k
Ajit Jadhav United States	50	5.1k 0.7×	543 0.3×	416 0.4×	373 0.7×	1.3k 2.5×	150	8.1k
Benjamin P. Tu United States	42	7.2k 1.0×	1.8k 1.1×	265 0.2×	866 1.7×	115 0.2×	89	9.5k
Diego di Bernardo Italy	41	5.3k 0.7×	487 0.3×	301 0.3×	444 0.9×	875 1.7×	143	7.2k
Hans‐Werner Mewes Germany	44	11.2k 1.6×	515 0.3×	475 0.4×	591 1.2×	1.2k 2.4×	124	13.9k
Tao Fang China	11	5.4k 0.8×	1.3k 0.8×	222 0.2×	520 1.0×	599 1.2×	35	9.3k

Countries citing papers authored by Tomer Shlomi

Since Specialization

Citations

This map shows the geographic impact of Tomer Shlomi's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tomer Shlomi with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tomer Shlomi more than expected).

Fields of papers citing papers by Tomer Shlomi

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tomer Shlomi. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tomer Shlomi. The network helps show where Tomer Shlomi may publish in the future.

Co-authorship network of co-authors of Tomer Shlomi

This figure shows the co-authorship network connecting the top 25 collaborators of Tomer Shlomi. A scholar is included among the top collaborators of Tomer Shlomi based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Tomer Shlomi. Tomer Shlomi is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Stern, A. A., et al.. (2023). Inferring mitochondrial and cytosolic metabolism by coupling isotope tracing and deconvolution. Nature Communications. 14(1). 7525–7525. 9 indexed citations

Sokol, Ethan, Metsada Pasmanik‐Chor, Dor Simkin, et al.. (2022). Genomic alterations drive metastases formation in pancreatic ductal adenocarcinoma cancer: deciphering the role of CDKN2A and CDKN2B in mediating liver tropism. Oncogene. 41(10). 1468–1481. 7 indexed citations

Mukha, Dzmitry, et al.. (2020). Fast and sensitive flow-injection mass spectrometry metabolomics by analyzing sample-specific ion distributions. Nature Communications. 11(1). 3186–3186. 56 indexed citations

Lee, Won Dong, Dzmitry Mukha, É. M. Aizenshtein, & Tomer Shlomi. (2019). Spatial-fluxomics provides a subcellular-compartmentalized view of reductive glutamine metabolism in cancer cells. Nature Communications. 10(1). 1351–1351. 53 indexed citations

Davidi, Dan, Εlad Noor, Wolfram Liebermeister, et al.. (2016). Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro k _cat measurements. Proceedings of the National Academy of Sciences. 113(12). 3401–3406. 186 indexed citations

Matschke, Johann, Diana Klein, René Handrick, et al.. (2016). Targeted Inhibition of Glutamine-Dependent Glutathione Metabolism Overcomes Death Resistance Induced by Chronic Cycling Hypoxia. Antioxidants and Redox Signaling. 25(2). 89–107. 49 indexed citations

Tepper, Naama & Tomer Shlomi. (2015). Efficient Modeling of MS/MS Data for Metabolic Flux Analysis. PLoS ONE. 10(7). e0130213–e0130213. 12 indexed citations

Fan, Jing, Jurre J. Kamphorst, Joshua D. Rabinowitz, & Tomer Shlomi. (2013). Fatty Acid Labeling from Glutamine in Hypoxia Can Be Explained by Isotope Exchange without Net Reductive Isocitrate Dehydrogenase (IDH) Flux. Journal of Biological Chemistry. 288(43). 31363–31369. 57 indexed citations

Kaplon, Joanna, Liang Zheng, Katrin Meissl, et al.. (2013). A key role for mitochondrial gatekeeper pyruvate dehydrogenase in oncogene-induced senescence. Nature. 498(7452). 109–112. 477 indexed citations breakdown →

10.

Sharon, Itai, Sivan Bercovici, Ron Y. Pinter, & Tomer Shlomi. (2011). Pathway-Based Functional Analysis of Metagenomes. Journal of Computational Biology. 18(3). 495–505. 19 indexed citations

11.

Meir, Sagit, et al.. (2011). Reconstruction ofArabidopsismetabolic network models accounting for subcellular compartmentalization and tissue-specificity. Proceedings of the National Academy of Sciences. 109(1). 339–344. 207 indexed citations

12.

Shlomi, Tomer, et al.. (2011). Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect. PLoS Computational Biology. 7(3). e1002018–e1002018. 187 indexed citations

13.

Zur, Hadas, Eytan Ruppin, & Tomer Shlomi. (2010). iMAT: an integrative metabolic analysis tool. Bioinformatics. 26(24). 3140–3142. 241 indexed citations

14.

Ruppin, Eytan, et al.. (2010). Associating Genes and Protein Complexes with Disease via Network Propagation. PLoS Computational Biology. 6(1). e1000641–e1000641. 633 indexed citations breakdown →

15.

Aharoni, Asaph, et al.. (2009). Network-based prediction of metabolic enzymes' subcellular localization. Bioinformatics. 25(12). i247–i1252. 36 indexed citations

16.

Diamant, Idit, Yonina C. Eldar, Oleg Rokhlenko, Eytan Ruppin, & Tomer Shlomi. (2009). A network-based method for predicting gene–nutrient interactions and its application to yeast amino-acidmetabolism. Molecular BioSystems. 5(12). 1732–1739. 6 indexed citations

17.

Shlomi, Tomer, Markus J. Herrgård, Vasiliy A. Portnoy, et al.. (2007). Systematic condition-dependent annotation of metabolic genes. Genome Research. 17(11). 1626–1633. 18 indexed citations

18.

Bilu, Yonatan, Tomer Shlomi, Naama Barkai, & Eytan Ruppin. (2006). Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States. PLoS Computational Biology. 2(8). e106–e106. 28 indexed citations

19.

Suthram, Silpa, Tomer Shlomi, Eytan Ruppin, Roded Sharan, & Trey Ideker. (2006). A direct comparison of protein interaction confidence assignment schemes. BMC Bioinformatics. 7(1). 360–360. 92 indexed citations

20.

Shlomi, Tomer, et al.. (2004). Constraint-Based Modelling Of Perturbed Organisms: A ROOM for improvement. Journal of Pharmacobio-Dynamics. 10(10). 537–42. 2 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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