Thomas Manke

23.4k total citations · 4 hit papers
92 papers, 11.9k citations indexed

About

Thomas Manke is a scholar working on Molecular Biology, Nuclear and High Energy Physics and Genetics. According to data from OpenAlex, Thomas Manke has authored 92 papers receiving a total of 11.9k indexed citations (citations by other indexed papers that have themselves been cited), including 57 papers in Molecular Biology, 27 papers in Nuclear and High Energy Physics and 10 papers in Genetics. Recurrent topics in Thomas Manke's work include Genomics and Chromatin Dynamics (29 papers), Quantum Chromodynamics and Particle Interactions (27 papers) and Particle physics theoretical and experimental studies (23 papers). Thomas Manke is often cited by papers focused on Genomics and Chromatin Dynamics (29 papers), Quantum Chromodynamics and Particle Interactions (27 papers) and Particle physics theoretical and experimental studies (23 papers). Thomas Manke collaborates with scholars based in Germany, Japan and United States. Thomas Manke's co-authors include Fidel Ramírez, Björn Grüning, Friederike Dündar, Vivek Bhardwaj, Andreas S. Richter, Fabian Kilpert, Devon Ryan, Steffen Heyne, Sarah Diehl and Martin Vingron and has published in prestigious journals such as Nature, Cell and Proceedings of the National Academy of Sciences.

In The Last Decade

Thomas Manke

91 papers receiving 11.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

deepTools2: a next generation web server for deep-sequencing data analysis

2016 4.4k citations Fidel Ramírez, Devon Ryan et al. Nucleic Acids Research profile →
deepTools: a flexible platform for exploring deep-sequencing data

2014 2.1k citations Fidel Ramírez, Friederike Dündar et al. Nucleic Acids Research profile →
High-resolution TADs reveal DNA sequences underlying genome organization in flies

2018 543 citations Fidel Ramírez, Vivek Bhardwaj et al. Nature Communications profile →
DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome

2017 422 citations Tuğçe Aktaş, İbrahim Ilik et al. Nature profile →

Peers

Countries citing papers authored by Thomas Manke

Since Specialization

Citations

This map shows the geographic impact of Thomas Manke's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Thomas Manke with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Thomas Manke more than expected).

Fields of papers citing papers by Thomas Manke

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Thomas Manke. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Thomas Manke. The network helps show where Thomas Manke may publish in the future.

Co-authorship network of co-authors of Thomas Manke

This figure shows the co-authorship network connecting the top 25 collaborators of Thomas Manke. A scholar is included among the top collaborators of Thomas Manke based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Thomas Manke. Thomas Manke is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Enhancing single-cell ATAC sequencing with formaldehyde fixation, cryopreservation, and multiplexing for flexible analysis 2025 ·BMC Research Notes ·Tobias M. Hohl, Ulrike Bönisch, Thomas Manke, Laura Arrigoni	0
2	Functional multi-organelle units control inflammatory lipid metabolism of macrophages 2024 ·Nature Cell Biology ·(unknown), (unknown), (unknown), (unknown), (unknown), (unknown), (unknown), Ward Deboutte, Thomas Manke, Klaus Ebnet, (unknown), (unknown), Thomas Vogl, (unknown), (unknown), Joerg M. Buescher, Angelika S. Rambold	25
3	RNA damage compartmentalization by DHX9 stress granules 2024 ·Cell ·Yilong Zhou, (unknown), Maria Shvedunova, (unknown), Alejandro Gomez‐Auli, Herbert Holz, Janine Seyfferth, Martin Helmstädter, (unknown), (unknown), (unknown), (unknown), Gerhard Mittler, Thomas Manke, Asifa Akhtar	42
4	Multimodal epigenetic changes and altered NEUROD1 chromatin binding in the mouse hippocampus underlie FOXG1 syndrome 2023 ·Proceedings of the National Academy of Sciences ·(unknown), Annalisa Izzo, (unknown), (unknown), Stefanie Heidrich, (unknown), Alejandro Villarreal, Christine Hacker, (unknown), (unknown), André Fischer, Thomas Manke, Tanja Vogel	9
5	pyGenomeTracks: reproducible plots for multivariate genomic datasets 2020 ·Bioinformatics ·Lucille Lopez‐Delisle, Leily Rabbani, Joachim Wolff, Vivek Bhardwaj, Rolf Backofen, Björn Grüning, Fidel Ramírez, Thomas Manke	247
6	Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization 2020 ·Nucleic Acids Research ·Joachim Wolff, Leily Rabbani, Ralf Gilsbach, Gautier Richard, Thomas Manke, Rolf Backofen, Björn Grüning	200
7	snakePipes: facilitating flexible, scalable and integrative epigenomic analysis 2019 ·Bioinformatics ·Vivek Bhardwaj, Steffen Heyne, Katarzyna Sikora, Leily Rabbani, (unknown), Fabian Kilpert, Andreas S. Richter, Devon Ryan, Thomas Manke	105
8	CAPRI enables comparison of evolutionarily conserved RNA interacting regions 2019 ·Nature Communications ·(unknown), Florian Richter, Fidel Ramírez, Maria Shvedunova, Thomas Manke, Gerhard Mittler, Asifa Akhtar	33
9	RELACS nuclei barcoding enables high-throughput ChIP-seq 2018 ·Communications Biology ·Laura Arrigoni, (unknown), Fidel Ramírez, Ilaria Panzeri, Devon Ryan, Diana Santacruz, (unknown), J. Andrew Pospisilik, Ulrike Bönisch, Thomas Manke	22
10	High-resolution TADs reveal DNA sequences underlying genome organization in flies breakdown → 2018 ·Nature Communications ·Fidel Ramírez, Vivek Bhardwaj, Laura Arrigoni, Kin Chung Lam, Björn Grüning, José Villaveces, Bianca Habermann, Asifa Akhtar, Thomas Manke	543
11	DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome breakdown → 2017 ·Nature ·Tuğçe Aktaş, İbrahim Ilik, Daniel Maticzka, Vivek Bhardwaj, Cecília Pessoa Rodrigues, Gerhard Mittler, Thomas Manke, Rolf Backofen, Asifa Akhtar	422
12	High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila 2015 ·Molecular Cell ·Fidel Ramírez, (unknown), Sarah Toscano, Kin Chung Lam, Plamen Georgiev, Ho‐Ryun Chung, Bryan R. Lajoie, Elzo de Wit, Ye Zhan, Wouter de Laat, Job Dekker, Thomas Manke, Asifa Akhtar	58
13	Standardizing chromatin research: a simple and universal method for ChIP-seq 2015 ·Nucleic Acids Research ·Laura Arrigoni, Andreas S. Richter, (unknown), (unknown), Sarah Diehl, Thomas Manke, Ulrike Bönisch	59
14	deepTools: a flexible platform for exploring deep-sequencing data breakdown → 2014 ·Nucleic Acids Research ·Fidel Ramírez, Friederike Dündar, Sarah Diehl, Björn Grüning, Thomas Manke	2106
15	Nontransformed, GM-CSF–dependent macrophage lines are a unique model to study tissue macrophage functions 2013 ·Proceedings of the National Academy of Sciences ·György Fejér, (unknown), Ildikó Győry, Idan Cohen, Peggy Engelhard, Elena Voronov, Thomas Manke, Zsolt Ruzsics, Lars Dölken, Olivia Prazeres da Costa, Nora Branzk, Michael Huber, Antje Prasse, Robert C. Schneider, Ron N. Apte, Chris Galanos, Marina A. Freudenberg	82
16	Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs 2011 ·Nature Protocols ·Morgane Thomas‐Chollier, Andrew L. Hufton, Matthias Heinig, Sean O’Keeffe, (unknown), Helge G. Roider, Thomas Manke, Martin Vingron	165
17	The BTB and CNC Homology 1 (BACH1) Target Genes Are Involved in the Oxidative Stress Response and in Control of the Cell Cycle 2011 ·Journal of Biological Chemistry ·Hans-Jörg Warnatz, Dominic Schmidt, Thomas Manke, Ilaria Piccini, Marc Sultan, Tatiana Borodina, Daniela Balzereit, Wasco Wruck, А. В. Солдатов, Martin Vingron, Hans Lehrach, Marie‐Laure Yaspo	135
18	MicroRNAs Differentially Expressed in Postnatal Aortic Development Downregulate Elastin via 3′ UTR and Coding-Sequence Binding Sites 2011 ·PLoS ONE ·Claus‐Eric Ott, Johannes Grünhagen, Marten Jäger, Daniel Horbelt, Simon Schwill, Klaus Kallenbach, Gao Guo, Thomas Manke, Petra Knaus, Stefan Mundlos, Peter N. Robinson	87
19	Integrating sequence, evolution and functional genomics in regulatory genomics 2009 ·Genome Biology ·Martin Vingron, Alvis Brāzma, Richard Coulson, Jacques van Helden, Thomas Manke, Kimmo Palin, Olivier Sand, Esko Ukkonen	14
20	Short ultraconserved promoter regions delineate a class of preferentially expressed alternatively spliced transcripts 2009 ·Genomics ·Christian Rödelsperger, Sebastian Köhler, Marcel H. Schulz, Thomas Manke, Sebastian Bauer, Peter N. Robinson	8

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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