Thom Vreven

10.3k total citations · 4 hit papers
76 papers, 7.7k citations indexed

About

Thom Vreven is a scholar working on Molecular Biology, Atomic and Molecular Physics, and Optics and Materials Chemistry. According to data from OpenAlex, Thom Vreven has authored 76 papers receiving a total of 7.7k indexed citations (citations by other indexed papers that have themselves been cited), including 36 papers in Molecular Biology, 29 papers in Atomic and Molecular Physics, and Optics and 17 papers in Materials Chemistry. Recurrent topics in Thom Vreven's work include Advanced Chemical Physics Studies (22 papers), Protein Structure and Dynamics (19 papers) and Spectroscopy and Quantum Chemical Studies (17 papers). Thom Vreven is often cited by papers focused on Advanced Chemical Physics Studies (22 papers), Protein Structure and Dynamics (19 papers) and Spectroscopy and Quantum Chemical Studies (17 papers). Thom Vreven collaborates with scholars based in United States, United Kingdom and Italy. Thom Vreven's co-authors include Keiji Morokuma, Zhiping Weng, Michael J. Frisch, Howook Hwang, Brian G. Pierce, H. Bernhard Schlegel, Kevin Wiehe, Bong‐Hyun Kim, Michael A. Robb and Massimo Olivucci and has published in prestigious journals such as Cell, Journal of the American Chemical Society and The Journal of Chemical Physics.

In The Last Decade

Thom Vreven

76 papers receiving 7.6k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers

2014 1.3k citations Brian G. Pierce, Howook Hwang et al. profile →
Combining Quantum Mechanics Methods with Molecular Mechanics Methods in ONIOM

2006 818 citations Thom Vreven, Keiji Morokuma et al. Journal of Chemical Theory and Computation profile →
Geometry optimization with QM/MM, ONIOM, and other combined methods. I. Microiterations and constraints

2003 518 citations Thom Vreven, Keiji Morokuma et al. Journal of Computational Chemistry profile →
On the application of the IMOMO (integrated molecular orbital + molecular orbital) method

2000 506 citations Thom Vreven, Keiji Morokuma Journal of Computational Chemistry profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Thom Vreven United States	40	3.9k	1.9k	1.6k	1.2k	1.1k	76	7.7k
Paolo Carloni Italy	54	6.1k 1.6×	1.4k 0.7×	1.6k 1.0×	1.1k 0.8×	592 0.5×	336	10.0k
Martin J. Field France	43	3.8k 1.0×	2.4k 1.3×	2.0k 1.2×	930 0.7×	822 0.7×	162	8.3k
Donald Bashford United States	40	7.3k 1.9×	1.8k 1.0×	2.0k 1.2×	1.2k 1.0×	678 0.6×	71	10.0k
Mats H. M. Olsson Sweden	31	5.8k 1.5×	978 0.5×	1.6k 1.0×	1.0k 0.8×	511 0.5×	43	8.9k
Andreas W. Götz United States	32	4.3k 1.1×	1.6k 0.8×	1.6k 1.0×	1.0k 0.8×	422 0.4×	83	7.8k
Elizabeth Hatcher United States	17	4.6k 1.2×	1.1k 0.6×	1.3k 0.8×	1.2k 1.0×	650 0.6×	20	8.0k
Ernst‐Walter Knapp Germany	40	3.6k 0.9×	1.9k 1.0×	1.1k 0.6×	876 0.7×	741 0.7×	137	5.9k
S. Madan Kumar India	21	4.5k 1.2×	1.6k 0.8×	1.8k 1.1×	1.3k 1.0×	583 0.5×	154	7.9k
U. Chandra Singh United States	28	5.6k 1.4×	2.8k 1.5×	2.1k 1.3×	1.9k 1.5×	1.5k 1.4×	65	10.3k
Ramy Farid United States	28	5.3k 1.4×	746 0.4×	1.1k 0.7×	1.4k 1.1×	747 0.7×	48	8.2k

Countries citing papers authored by Thom Vreven

Since Specialization

Citations

This map shows the geographic impact of Thom Vreven's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Thom Vreven with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Thom Vreven more than expected).

Fields of papers citing papers by Thom Vreven

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Thom Vreven. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Thom Vreven. The network helps show where Thom Vreven may publish in the future.

Co-authorship network of co-authors of Thom Vreven

This figure shows the co-authorship network connecting the top 25 collaborators of Thom Vreven. A scholar is included among the top collaborators of Thom Vreven based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Thom Vreven. Thom Vreven is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Vreven, Thom, et al.. (2023). Multi-omic single cell sequencing: Overview and opportunities for kidney disease therapeutic development. Frontiers in Molecular Biosciences. 10. 1176856–1176856. 1 indexed citations

Guest, Johnathan D., Thom Vreven, Jing Zhou, et al.. (2021). An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants. Structure. 29(6). 606–621.e5. 71 indexed citations

Vreven, Thom, et al.. (2020). Performance of ZDOCK and IRAD in CAPRI rounds 39‐45. Proteins Structure Function and Bioinformatics. 88(8). 1050–1054. 12 indexed citations

Vreven, Thom & Stephen C. Miller. (2018). Computational investigation into the fluorescence of luciferin analogues. Journal of Computational Chemistry. 40(2). 527–531. 7 indexed citations

Vreven, Thom, Iain H. Moal, Anna Vangone, et al.. (2015). Updates to the Integrated Protein–Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2. Journal of Molecular Biology. 427(19). 3031–3041. 304 indexed citations

Zhang, Zhao, Jie Wang, Fan Zhang, et al.. (2014). The HP1 Homolog Rhino Anchors a Nuclear Complex that Suppresses piRNA Precursor Splicing. Cell. 157(6). 1353–1363. 169 indexed citations

Vreven, Thom, Howook Hwang, Brian G. Pierce, & Zhiping Weng. (2012). Prediction of protein–protein binding free energies. Protein Science. 21(3). 396–404. 67 indexed citations

Zhang, Fan, Jie Wang, Jia Xu, et al.. (2012). UAP56 Couples piRNA Clusters to the Perinuclear Transposon Silencing Machinery. Cell. 151(4). 871–884. 180 indexed citations

Vreven, Thom, et al.. (2012). Deconstructing the ONIOM Hessian: Investigating Method Combinations for Transition Structures. Journal of Chemical Theory and Computation. 8(12). 4907–4914. 10 indexed citations

10.

Caricato, Marco, Thom Vreven, Gary W. Trucks, & Michael J. Frisch. (2010). Link atom bond length effect in ONIOM excited state calculations. The Journal of Chemical Physics. 133(5). 54104–54104. 11 indexed citations

11.

Hwang, Howook, Thom Vreven, Brian G. Pierce, Jui‐Hung Hung, & Zhiping Weng. (2010). Performance of ZDOCK and ZRANK in CAPRI rounds 13–19. Proteins Structure Function and Bioinformatics. 78(15). 3104–3110. 65 indexed citations

12.

Mori, Seiji, Thom Vreven, & Keiji Morokuma. (2006). Transition States of Binap–Rhodium(I)‐Catalyzed Asymmetric Hydrogenation: Theoretical Studies on the Origin of the Enantioselectivity. Chemistry - An Asian Journal. 1(3). 391–403. 25 indexed citations

13.

Vreven, Thom, Michael J. Frisch, Konstantin N. Kudin, H. Bernhard Schlegel, & Keiji Morokuma. (2006). Geometry optimization with QM/MM methods II: Explicit quadratic coupling. Molecular Physics. 104(5-7). 701–714. 130 indexed citations

14.

Fermann, Justin T., et al.. (2005). Modeling Proton Transfer in Zeolites: Convergence Behavior of Embedded and Constrained Cluster Calculations. Journal of Chemical Theory and Computation. 1(6). 1232–1239. 55 indexed citations

15.

Vreven, Thom, Keiji Morokuma, Ödön Farkas, H. Bernhard Schlegel, & Michael J. Frisch. (2003). Geometry optimization with QM/MM, ONIOM, and other combined methods. I. Microiterations and constraints. Journal of Computational Chemistry. 24(6). 760–769. 518 indexed citations breakdown →

16.

Torrent, Maricel, Thom Vreven, Djamaladdin G. Musaev, et al.. (2001). Effects of the Protein Environment on the Structure and Energetics of Active Sites of Metalloenzymes. ONIOM Study of Methane Monooxygenase and Ribonucleotide Reductase. Journal of the American Chemical Society. 124(2). 192–193. 109 indexed citations

17.

Sánchez-Gálvez, Adelaida, Patricia A. Hunt, Michael A. Robb, et al.. (2000). Ultrafast Radiationless Deactivation of Organic Dyes: Evidence for a Two-State Two-Mode Pathway in Polymethine Cyanines. Journal of the American Chemical Society. 122(12). 2911–2924. 168 indexed citations

18.

Garavelli, Marco, Thom Vreven, Paolo Celani, et al.. (1998). Photoisomerization Path for a Realistic Retinal Chromophore Model: The Nonatetraeniminium Cation. Journal of the American Chemical Society. 120(6). 1285–1288. 126 indexed citations

19.

Bearpark, Michael J., et al.. (1997). Cooperating Rings in cis-Stilbene Lead to an S₀/S₁ Conical Intersection. The Journal of Physical Chemistry A. 101(21). 3841–3847. 85 indexed citations

20.

Yamamoto, Naoko, Thom Vreven, Michael A. Robb, Michael J. Frisch, & H. Bernhard Schlegel. (1996). A direct derivative MC-SCF procedure. Chemical Physics Letters. 250(3-4). 373–378. 227 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact