Anna Vangone

4.2k total citations · 2 hit papers
30 papers, 2.6k citations indexed

About

Anna Vangone is a scholar working on Molecular Biology, Computational Theory and Mathematics and Materials Chemistry. According to data from OpenAlex, Anna Vangone has authored 30 papers receiving a total of 2.6k indexed citations (citations by other indexed papers that have themselves been cited), including 25 papers in Molecular Biology, 13 papers in Computational Theory and Mathematics and 13 papers in Materials Chemistry. Recurrent topics in Anna Vangone's work include Protein Structure and Dynamics (22 papers), Computational Drug Discovery Methods (13 papers) and Enzyme Structure and Function (11 papers). Anna Vangone is often cited by papers focused on Protein Structure and Dynamics (22 papers), Computational Drug Discovery Methods (13 papers) and Enzyme Structure and Function (11 papers). Anna Vangone collaborates with scholars based in Netherlands, Italy and Saudi Arabia. Anna Vangone's co-authors include Alexandre M. J. J. Bonvin, Li C. Xue, Panagiotis L. Kastritis, João Rodrigues, Romina Oliva, Luigi Cavallo, Cunliang Geng, Vittorio Scarano, Raffaele Spinelli and Panagiotis I. Koukos and has published in prestigious journals such as Bioinformatics, The Journal of Immunology and PLoS ONE.

In The Last Decade

Anna Vangone

30 papers receiving 2.6k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

PRODIGY: a web server for predicting the binding affinity of protein–protein complexes

2016 858 citations Li C. Xue, João Rodrigues et al. Bioinformatics profile →
Contacts-based prediction of binding affinity in protein–protein complexes

2015 404 citations Anna Vangone, Alexandre M. J. J. Bonvin eLife profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Anna Vangone Netherlands	19	1.9k	526	434	353	342	30	2.6k
Adrien S. J. Melquiond Netherlands	19	2.4k 1.3×	403 0.8×	312 0.7×	304 0.9×	381 1.1×	23	3.2k
Mikaël Trellet Netherlands	16	2.2k 1.2×	385 0.7×	355 0.8×	305 0.9×	264 0.8×	20	3.1k
Li C. Xue Netherlands	17	1.4k 0.8×	444 0.8×	339 0.8×	223 0.6×	218 0.6×	33	2.0k
Ezgi Karaca Türkiye	20	2.3k 1.2×	286 0.5×	302 0.7×	266 0.8×	417 1.2×	44	3.0k
Kevin Wiehe United States	18	2.0k 1.0×	414 0.8×	637 1.5×	500 1.4×	321 0.9×	43	3.1k
Yumeng Yan China	15	1.9k 1.0×	327 0.6×	385 0.9×	205 0.6×	171 0.5×	35	2.8k
Gydo C. P. van Zundert Netherlands	17	2.0k 1.1×	235 0.4×	302 0.7×	265 0.8×	374 1.1×	19	2.8k
Stephen R. Comeau United States	11	2.1k 1.1×	441 0.8×	174 0.4×	371 1.1×	433 1.3×	19	2.7k
Traian Sulea Canada	29	1.8k 1.0×	430 0.8×	343 0.8×	388 1.1×	215 0.6×	113	2.9k
Kathryn A. Porter United States	9	2.3k 1.2×	320 0.6×	437 1.0×	479 1.4×	222 0.6×	12	3.1k

Countries citing papers authored by Anna Vangone

Since Specialization

Citations

This map shows the geographic impact of Anna Vangone's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Anna Vangone with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Anna Vangone more than expected).

Fields of papers citing papers by Anna Vangone

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Anna Vangone. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Anna Vangone. The network helps show where Anna Vangone may publish in the future.

Co-authorship network of co-authors of Anna Vangone

This figure shows the co-authorship network connecting the top 25 collaborators of Anna Vangone. A scholar is included among the top collaborators of Anna Vangone based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Anna Vangone. Anna Vangone is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Barradas‐Bautista, Didier, Zhen Cao, Anna Vangone, Romina Oliva, & Luigi Cavallo. (2021). A random forest classifier for protein–protein docking models. Bioinformatics Advances. 2(1). vbab042–vbab042. 6 indexed citations

Fernández‐Quintero, Monica L., et al.. (2021). Paratope states in solution improve structure prediction and docking. Structure. 30(3). 430–440.e3. 13 indexed citations

Georges, Guy, et al.. (2021). Co-evolutionary distance predictions contain flexibility information. Bioinformatics. 38(1). 65–72. 11 indexed citations

Koukos, Panagiotis I., Jorge Roel‐Touris, Francesco Ambrosetti, et al.. (2019). An overview of data‐driven HADDOCK strategies in CAPRI rounds 38‐45. Proteins Structure Function and Bioinformatics. 88(8). 1029–1036. 13 indexed citations

Geng, Cunliang, Anna Vangone, Gert E. Folkers, Li C. Xue, & Alexandre M. J. J. Bonvin. (2018). iSEE: Interface structure, evolution, and energy‐based machine learning predictor of binding affinity changes upon mutations. Proteins Structure Function and Bioinformatics. 87(2). 110–119. 56 indexed citations

Calvanese, Luisa, Gabriella D’Auria, Anna Vangone, Lucia Falcigno, & Romina Oliva. (2018). Structural Basis for Mutations of Human Aquaporins Associated to Genetic Diseases. International Journal of Molecular Sciences. 19(6). 1577–1577. 18 indexed citations

Bonvin, Alexandre M. J. J., et al.. (2018). Distinguishing crystallographic from biological interfaces in protein complexes: role of intermolecular contacts and energetics for classification. BMC Bioinformatics. 19(S15). 438–438. 24 indexed citations

Vangone, Anna, Jörg Schaarschmidt, Panagiotis I. Koukos, et al.. (2018). Large-scale prediction of binding affinity in protein–small ligand complexes: the PRODIGY-LIG web server. Bioinformatics. 35(9). 1585–1587. 172 indexed citations

Kurkcuoglu, Zeynep, Panagiotis I. Koukos, Mikaël Trellet, et al.. (2017). Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2. Journal of Computer-Aided Molecular Design. 32(1). 175–185. 100 indexed citations

10.

Vangone, Anna & Alexandre M. J. J. Bonvin. (2017). PRODIGY: A Contact-based Predictor of Binding Affinity in Protein-protein Complexes. BIO-PROTOCOL. 7(3). 72 indexed citations

11.

Geng, Cunliang, Anna Vangone, & Alexandre M. J. J. Bonvin. (2016). Exploring the interplay between experimental methods and the performance of predictors of binding affinity change upon mutations in protein complexes. Protein Engineering Design and Selection. 29(8). 291–299. 22 indexed citations

12.

Xue, Li C., João Rodrigues, Panagiotis L. Kastritis, Alexandre M. J. J. Bonvin, & Anna Vangone. (2016). PRODIGY: a web server for predicting the binding affinity of protein–protein complexes. Bioinformatics. 32(23). 3676–3678. 858 indexed citations breakdown →

13.

Calvanese, Luisa, Gabriella D’Auria, Anna Vangone, Lucia Falcigno, & Romina Oliva. (2016). Analysis of the interface variability in NMR structure ensembles of protein–protein complexes. Journal of Structural Biology. 194(3). 317–324. 5 indexed citations

14.

Vreven, Thom, Iain H. Moal, Anna Vangone, et al.. (2015). Updates to the Integrated Protein–Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2. Journal of Molecular Biology. 427(19). 3031–3041. 304 indexed citations

15.

Vangone, Anna & Alexandre M. J. J. Bonvin. (2015). Contacts-based prediction of binding affinity in protein–protein complexes. eLife. 4. e07454–e07454. 404 indexed citations breakdown →

16.

Vangone, Anna, Safwat Abdel‐Azeim, Ivana Caputo, et al.. (2014). Structural Basis for the Recognition in an Idiotype-Anti-Idiotype Antibody Complex Related to Celiac Disease. PLoS ONE. 9(7). e102839–e102839. 10 indexed citations

17.

Abdel‐Azeim, Safwat, Edrisse Chermak, Anna Vangone, Romina Oliva, & Luigi Cavallo. (2014). MDcons: Intermolecular contact maps as a tool to analyze the interface of protein complexes from molecular dynamics trajectories. BMC Bioinformatics. 15(S5). 33 indexed citations

18.

Menegatti, Marzia, Anna Vangone, Roberta Palla, et al.. (2013). A recurrent Gly43Asp substitution in coagulation Factor X rigidifies its catalytic pocket and impairs catalytic activity and intracellular trafficking. Thrombosis Research. 133(3). 481–487. 8 indexed citations

19.

Vangone, Anna, Luigi Cavallo, & Romina Oliva. (2013). Using a consensus approach based on the conservation of inter‐residue contacts to rank CAPRI models. Proteins Structure Function and Bioinformatics. 81(12). 2210–2220. 21 indexed citations

20.

Vangone, Anna, Romina Oliva, & Luigi Cavallo. (2012). CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions. BMC Bioinformatics. 13(S4). S19–S19. 29 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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