Suzanne Paley

16.5k total citations · 6 hit papers
60 papers, 8.8k citations indexed

About

Suzanne Paley is a scholar working on Molecular Biology, Computer Networks and Communications and Computational Theory and Mathematics. According to data from OpenAlex, Suzanne Paley has authored 60 papers receiving a total of 8.8k indexed citations (citations by other indexed papers that have themselves been cited), including 55 papers in Molecular Biology, 5 papers in Computer Networks and Communications and 5 papers in Computational Theory and Mathematics. Recurrent topics in Suzanne Paley's work include Microbial Metabolic Engineering and Bioproduction (41 papers), Bioinformatics and Genomic Networks (33 papers) and Genomics and Phylogenetic Studies (11 papers). Suzanne Paley is often cited by papers focused on Microbial Metabolic Engineering and Bioproduction (41 papers), Bioinformatics and Genomic Networks (33 papers) and Genomics and Phylogenetic Studies (11 papers). Suzanne Paley collaborates with scholars based in United States, Australia and Mexico. Suzanne Paley's co-authors include Peter D. Karp, Markus Krummenacker, Ingrid M. Keseler, Ron Caspi, Mario Latendresse, Anamika Kothari, Pallavi Subhraveti, Richard Billington, Carol A. Fulcher and Quang Ong and has published in prestigious journals such as Nucleic Acids Research, SHILAP Revista de lepidopterología and Bioinformatics.

In The Last Decade

Suzanne Paley

59 papers receiving 8.7k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

2015 1.9k citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

2013 867 citations Ron Caspi, Tomer Altman et al. Nucleic Acids Research profile →
The MetaCyc database of metabolic pathways and enzymes - a 2019 update

2019 795 citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
The MetaCyc database of metabolic pathways and enzymes

2017 597 citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
The BioCyc collection of microbial genomes and metabolic pathways

2017 594 citations Peter D. Karp, Richard Billington et al. profile →
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

2009 538 citations Peter D. Karp, Suzanne Paley et al. profile →

Peers

Countries citing papers authored by Suzanne Paley

Since Specialization

Citations

This map shows the geographic impact of Suzanne Paley's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Suzanne Paley with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Suzanne Paley more than expected).

Fields of papers citing papers by Suzanne Paley

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Suzanne Paley. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Suzanne Paley. The network helps show where Suzanne Paley may publish in the future.

Co-authorship network of co-authors of Suzanne Paley

This figure shows the co-authorship network connecting the top 25 collaborators of Suzanne Paley. A scholar is included among the top collaborators of Suzanne Paley based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Suzanne Paley. Suzanne Paley is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	Revisiting the y-ome of Escherichia coli 2024 ·Nucleic Acids Research ·Lisa R. Moore, Ron Caspi, Dana Boyd, Mehmet Berkmen, Amanda Mackie, Suzanne Paley, Peter D. Karp	7
2	CyanoCyc cyanobacterial web portal 2024 ·Frontiers in Microbiology ·Lisa R. Moore, Ron Caspi, Douglas A. Campbell, John R. Casey, Sophie Crévecoeur, David J. Lea‐Smith, Bin Long, (unknown), Suzanne Paley, Nicolas Schmelling, (unknown), Jonathan P. Zehr, Peter D. Karp	7
3	The Omics Dashboard for Interactive Exploration of Metabolomics and Multi-Omics Data 2024 ·Metabolites ·Suzanne Paley, Peter D. Karp	2
4	Resources to Facilitate Use of the Altered Schaedler Flora (ASF) Mouse Model to Study Microbiome Function 2022 ·mSystems ·Alexandra Proctor, (unknown), Tanner Richie, (unknown), Sonny T. M. Lee, Peter D. Karp, Suzanne Paley, Aleksandar D. Kostic, Joseph F. Pierre, Michael J. Wannemuehler, Gregory J. Phillips	4
5	Pathway Tools Management of Pathway/Genome Data for Microbial Communities 2022 ·SHILAP Revista de lepidopterología ·Peter D. Karp, Suzanne Paley, Markus Krummenacker, Anamika Kothari, Michael J. Wannemuehler, Gregory J. Phillips	10
6	Plant Metabolic Network 15: A resource of genome‐wide metabolism databases for 126 plants and algae 2021 ·Journal of Integrative Plant Biology ·Charles Hawkins, (unknown), Kangmei Zhao, (unknown), (unknown), (unknown), Selena L. Rice, Benjamin Cole, Suzanne Paley, Peter D. Karp, Seung Y. Rhee	112
7	The EcoCyc Database in 2021 2021 ·Frontiers in Microbiology ·Ingrid M. Keseler, Socorro Gama‐Castro, Amanda Mackie, Richard Billington, César Bonavides-Martínez, Ron Caspi, Anamika Kothari, Markus Krummenacker, Peter Midford, Luis Muñiz-Rascado, Wai Kit Ong, Suzanne Paley, Alberto Santos-Zavaleta, Pallavi Subhraveti, Víctor H. Tierrafría, Alan J. Wolfe, Julio Collado‐Vides, Ian T. Paulsen, Peter D. Karp	146
8	The BioCyc Metabolic Network Explorer 2021 ·BMC Bioinformatics ·Suzanne Paley, Peter D. Karp	12
9	A Comparison of Microbial Genome Web Portals 2019 ·Frontiers in Microbiology ·Peter D. Karp, Natalia Ivanova, Markus Krummenacker, Nikos C. Kyrpides, Mario Latendresse, Peter Midford, Wai Kit Ong, Suzanne Paley, R. Seshadri	18
10	BioCyc: A Genomic and Metabolic Web Portal with Multiple Omics Analytical Tools 2019 ·The FASEB Journal ·Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter Midford, Wai Kit Ong, Suzanne Paley, Pallavi Subhraveti, Peter D. Karp	8
11	The MultiOmics Explainer: explaining omics results in the context of a pathway/genome database 2019 ·BMC Bioinformatics ·Suzanne Paley, Peter D. Karp	3
12	The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases breakdown → 2015 ·Nucleic Acids Research ·Ron Caspi, Richard Billington, Luciana Ferrer, Hartmut Foerster, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne Paley, Pallavi Subhraveti, Daniel Weaver, Peter D. Karp	1906
13	The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases 2011 ·Nucleic Acids Research ·Rachel R Caspi, Tomer Altman, Kate Dreher, CA Fulcher, Pallavi Subhraveti, Ingrid M. Keseler, A Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne Paley, Anuradha Pujar, Alexander G. Shearer, Michael Travers, Deepika Weerasinghe, (unknown), Peter D. Karp	457
14	Browsing Metabolic and Regulatory Networks with BioCyc 2011 ·Methods in molecular biology ·Mario Latendresse, Suzanne Paley, Peter D. Karp	23
15	EcoCyc: A comprehensive view of Escherichia coli biology 2008 ·Nucleic Acids Research ·Ingrid M. Keseler, César Bonavides-Martínez, Julio Collado‐Vides, Socorro Gama‐Castro, Robert P. Gunsalus, Daniel Johnson, Markus Krummenacker, Laura M. Nolan, Suzanne Paley, Ian T. Paulsen, Martín Peralta-Gil, Alberto Santos-Zavaleta, Alexander G. Shearer, Peter D. Karp	275
16	Database verification studies of SWISS-PROT and GenBank 2001 ·Bioinformatics ·Peter D. Karp, Suzanne Paley, Jingchun Zhu	22
17	A generic knowledge-base browser and editor 1997 ·National Conference on Artificial Intelligence ·Suzanne Paley, John D. Lowrance, Peter D. Karp	20
18	EcoCyc: Enyclopedia of Escherichia coli Genes and Metabolism 1997 ·Nucleic Acids Research ·Peter D. Karp, Margaret A. Riley, Suzanne Paley, (unknown), Markus Krummenacker	26
19	Integrated Access to Metabolic and Genomic Data 1996 ·Journal of Computational Biology ·Peter D. Karp, Suzanne Paley	43
20	Knowledge representation in the large 1995 ·International Joint Conference on Artificial Intelligence ·Peter D. Karp, Suzanne Paley	11

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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