Ron Caspi

12.5k total citations · 6 hit papers
37 papers, 7.3k citations indexed

About

Ron Caspi is a scholar working on Molecular Biology, Ecology and Biomedical Engineering. According to data from OpenAlex, Ron Caspi has authored 37 papers receiving a total of 7.3k indexed citations (citations by other indexed papers that have themselves been cited), including 33 papers in Molecular Biology, 6 papers in Ecology and 5 papers in Biomedical Engineering. Recurrent topics in Ron Caspi's work include Microbial Metabolic Engineering and Bioproduction (21 papers), Bioinformatics and Genomic Networks (16 papers) and Genomics and Phylogenetic Studies (10 papers). Ron Caspi is often cited by papers focused on Microbial Metabolic Engineering and Bioproduction (21 papers), Bioinformatics and Genomic Networks (16 papers) and Genomics and Phylogenetic Studies (10 papers). Ron Caspi collaborates with scholars based in United States, Australia and Poland. Ron Caspi's co-authors include Peter D. Karp, Suzanne Paley, Markus Krummenacker, Anamika Kothari, Ingrid M. Keseler, Mario Latendresse, Pallavi Subhraveti, Richard Billington, Carol A. Fulcher and Quang Ong and has published in prestigious journals such as Nucleic Acids Research, Journal of Biological Chemistry and The EMBO Journal.

In The Last Decade

Ron Caspi

37 papers receiving 7.2k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

2015 1.9k citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

2013 867 citations Ron Caspi, Tomer Altman et al. Nucleic Acids Research profile →
The MetaCyc database of metabolic pathways and enzymes - a 2019 update

2019 795 citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
The MetaCyc database of metabolic pathways and enzymes

2017 597 citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
The BioCyc collection of microbial genomes and metabolic pathways

2017 594 citations Peter D. Karp, Richard Billington et al. profile →
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

2009 538 citations Peter D. Karp, Suzanne Paley et al. profile →

Peers

Countries citing papers authored by Ron Caspi

Since Specialization

Citations

This map shows the geographic impact of Ron Caspi's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ron Caspi with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ron Caspi more than expected).

Fields of papers citing papers by Ron Caspi

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ron Caspi. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ron Caspi. The network helps show where Ron Caspi may publish in the future.

Co-authorship network of co-authors of Ron Caspi

This figure shows the co-authorship network connecting the top 25 collaborators of Ron Caspi. A scholar is included among the top collaborators of Ron Caspi based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Ron Caspi. Ron Caspi is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	Revisiting the y-ome of Escherichia coli 2024 ·Nucleic Acids Research ·Lisa R. Moore, Ron Caspi, Dana Boyd, Mehmet Berkmen, Amanda Mackie, Suzanne Paley, Peter D. Karp	7
2	An evaluation of ChatGPT and Bard (Gemini) in the context of biological knowledge retrieval 2024 ·Access Microbiology ·Ron Caspi, Peter D. Karp	3
3	CyanoCyc cyanobacterial web portal 2024 ·Frontiers in Microbiology ·Lisa R. Moore, Ron Caspi, Douglas A. Campbell, John R. Casey, Sophie Crévecoeur, David J. Lea‐Smith, Bin Long, (unknown), Suzanne Paley, Nicolas Schmelling, (unknown), Jonathan P. Zehr, Peter D. Karp	7
4	The Comparative Genome Dashboard 2024 ·Frontiers in Microbiology ·Suzanne Paley, Ron Caspi, Paul E. O’Maille, Peter D. Karp	1
5	The EcoCyc Database in 2021 2021 ·Frontiers in Microbiology ·Ingrid M. Keseler, Socorro Gama‐Castro, Amanda Mackie, Richard Billington, César Bonavides-Martínez, Ron Caspi, Anamika Kothari, Markus Krummenacker, Peter Midford, Luis Muñiz-Rascado, Wai Kit Ong, Suzanne Paley, Alberto Santos-Zavaleta, Pallavi Subhraveti, Víctor H. Tierrafría, Alan J. Wolfe, Julio Collado‐Vides, Ian T. Paulsen, Peter D. Karp	146
6	BioCyc: A Genomic and Metabolic Web Portal with Multiple Omics Analytical Tools 2019 ·The FASEB Journal ·Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter Midford, Wai Kit Ong, Suzanne Paley, Pallavi Subhraveti, Peter D. Karp	8
7	The MetaCyc database of metabolic pathways and enzymes breakdown → 2017 ·Nucleic Acids Research ·Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter Midford, Quang Ong, Wai Kit Ong, Suzanne Paley, Pallavi Subhraveti, Peter D. Karp	597
8	The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases breakdown → 2015 ·Nucleic Acids Research ·Ron Caspi, Richard Billington, Luciana Ferrer, Hartmut Foerster, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne Paley, Pallavi Subhraveti, Daniel Weaver, Peter D. Karp	1906
9	Updating and curating metabolic pathways of TB 2013 ·Tuberculosis ·Richard A. Slayden, Mary Jackson, Jeremy Zucker, Melissa V. Ramirez, (unknown), Rebecca Crew, Nicole S. Sampson, Suzanne T. Thomas, Neema Jamshidi, Peter Sisk, Ron Caspi, Dean C. Crick, Michael McNeil, Martin S. Pavelka, Michael Niederweis, Axel Siroy, Valentina Donà, Johnjoe McFadden, Helena I. Boshoff, J. Lew	18
10	The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases breakdown → 2013 ·Nucleic Acids Research ·Ron Caspi, Tomer Altman, Richard Billington, Kate Dreher, Hartmut Foerster, Carol A. Fulcher, Timothy A. Holland, Ingrid M. Keseler, Anamika Kothari, (unknown), Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne Paley, Pallavi Subhraveti, Daniel Weaver, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp	867
11	The Pathway Tools Pathway Prediction Algorithm 2011 ·Standards in Genomic Sciences ·Peter D. Karp, Mario Latendresse, Ron Caspi	84
12	A survey of metabolic databases emphasizing the MetaCyc family 2011 ·Archives of Toxicology ·Peter D. Karp, Ron Caspi	51
13	Creation of a Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach for Reconstruction and Curation of Metabolic Pathways for Plants 2010 ·PLANT PHYSIOLOGY ·Peifen Zhang, Kate Dreher, Athikkattuvalasu S. Karthikeyan, (unknown), Anuradha Pujar, Ron Caspi, Peter D. Karp, Vanessa M. Kirkup, Mario Latendresse, Cynthia Lee, Lukas A. Mueller, Robert Müller, Seung Y. Rhee	98
14	The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases 2009 ·Nucleic Acids Research ·Ron Caspi, Tomer Altman, (unknown), Kate Dreher, Carol A. Fulcher, (unknown), (unknown), Athikkattuvalasu S. Karthikeyan, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Suzanne Paley, Liviu Popescu, Anuradha Pujar, Alexander G. Shearer, Peifen Zhang, Peter D. Karp	376
15	A 50-kb Plasmid Rich in Mobile Gene Sequences Isolated from a Marine Micrococcus 2002 ·Plasmid ·Zhenping Zhong, Ron Caspi, Tracy J. Mincer, Donald R. Helinski, Vic Knauf, (unknown), (unknown), (unknown), (unknown), Aresa Toukdarian	7
16	A broad host range replicon with different requirements for replication initiation in three bacterial species 2001 ·The EMBO Journal ·Ron Caspi	61
17	Interactions of DnaA Proteins from Distantly Related Bacteria with the Replication Origin of the Broad Host Range Plasmid RK2 2000 ·Journal of Biological Chemistry ·Ron Caspi, Donald R. Helinski, Marcin Pacek, Igor Konieczny	31
18	Detection of DNA Replication Intermediates after Two-Dimensional Agarose Gel Electrophoresis Using a Fluorescein-Labeled Probe 1999 ·Analytical Biochemistry ·(unknown), Ron Caspi, Magdalena Gabig‐Cimińska, Grzegorz Węgrzyn	10
19	Bacterially mediated mineral formation; insights into manganese(II) oxidation from molecular genetic and biochemical studies 1997 ·Reviews in Mineralogy & Geochemistry ·Bradley M. Tebo, William C. Ghiorse, Lorraine G. van Waasbergen, Patricia L. Siering, Ron Caspi	205
20	Unusual ribulose-1,5-bisphosphate carboxylase/oxygenase genes from a marine manganese-oxidizing bacterium 1996 ·Microbiology ·Ron Caspi, Margo G. Haygood, Bradley M. Tebo	33

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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