Peter D. Karp

31.7k total citations · 7 hit papers
159 papers, 15.3k citations indexed

About

Peter D. Karp is a scholar working on Molecular Biology, Artificial Intelligence and Biomedical Engineering. According to data from OpenAlex, Peter D. Karp has authored 159 papers receiving a total of 15.3k indexed citations (citations by other indexed papers that have themselves been cited), including 130 papers in Molecular Biology, 21 papers in Artificial Intelligence and 18 papers in Biomedical Engineering. Recurrent topics in Peter D. Karp's work include Microbial Metabolic Engineering and Bioproduction (87 papers), Bioinformatics and Genomic Networks (66 papers) and Genomics and Phylogenetic Studies (31 papers). Peter D. Karp is often cited by papers focused on Microbial Metabolic Engineering and Bioproduction (87 papers), Bioinformatics and Genomic Networks (66 papers) and Genomics and Phylogenetic Studies (31 papers). Peter D. Karp collaborates with scholars based in United States, Australia and United Kingdom. Peter D. Karp's co-authors include Suzanne Paley, Markus Krummenacker, Ron Caspi, Mario Latendresse, Ingrid M. Keseler, Anamika Kothari, Pallavi Subhraveti, Richard Billington, Carol A. Fulcher and Quang Ong and has published in prestigious journals such as Science, Nucleic Acids Research and SHILAP Revista de lepidopterología.

In The Last Decade

Peter D. Karp

158 papers receiving 14.9k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

2015 1.9k citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information

2007 1.0k citations Adam M. Feist, Christopher S. Henry et al. Molecular Systems Biology profile →
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

2013 867 citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
The MetaCyc database of metabolic pathways and enzymes - a 2019 update

2019 795 citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
The MetaCyc database of metabolic pathways and enzymes

2017 597 citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
The BioCyc collection of microbial genomes and metabolic pathways

2017 594 citations Peter D. Karp, Richard Billington et al. profile →
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

2009 538 citations Peter D. Karp, Suzanne Paley et al. profile →

Peers

Countries citing papers authored by Peter D. Karp

Since Specialization

Citations

This map shows the geographic impact of Peter D. Karp's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Peter D. Karp with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Peter D. Karp more than expected).

Fields of papers citing papers by Peter D. Karp

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Peter D. Karp. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Peter D. Karp. The network helps show where Peter D. Karp may publish in the future.

Co-authorship network of co-authors of Peter D. Karp

This figure shows the co-authorship network connecting the top 25 collaborators of Peter D. Karp. A scholar is included among the top collaborators of Peter D. Karp based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Peter D. Karp. Peter D. Karp is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	The Genome Explorer genome browser 2024 ·mSystems ·(unknown), Markus Krummenacker, Aaron Spaulding, Paul E. O’Maille, Peter D. Karp	3
2	Revisiting the y-ome of Escherichia coli 2024 ·Nucleic Acids Research ·Lisa R. Moore, Ron Caspi, Dana Boyd, Mehmet Berkmen, Amanda Mackie, Suzanne Paley, Peter D. Karp	7
3	An evaluation of ChatGPT and Bard (Gemini) in the context of biological knowledge retrieval 2024 ·Access Microbiology ·Ron Caspi, Peter D. Karp	3
4	Resources to Facilitate Use of the Altered Schaedler Flora (ASF) Mouse Model to Study Microbiome Function 2022 ·mSystems ·Alexandra Proctor, (unknown), Tanner Richie, (unknown), Sonny T. M. Lee, Peter D. Karp, Suzanne Paley, Aleksandar D. Kostic, Joseph F. Pierre, Michael J. Wannemuehler, Gregory J. Phillips	4
5	Plant Metabolic Network 15: A resource of genome‐wide metabolism databases for 126 plants and algae 2021 ·Journal of Integrative Plant Biology ·Charles Hawkins, (unknown), Kangmei Zhao, (unknown), (unknown), (unknown), Selena L. Rice, Benjamin Cole, Suzanne Paley, Peter D. Karp, Seung Y. Rhee	112
6	The EcoCyc Database in 2021 2021 ·Frontiers in Microbiology ·Ingrid M. Keseler, Socorro Gama‐Castro, Amanda Mackie, Richard Billington, César Bonavides-Martínez, Ron Caspi, Anamika Kothari, Markus Krummenacker, Peter Midford, Luis Muñiz-Rascado, Wai Kit Ong, Suzanne Paley, Alberto Santos-Zavaleta, Pallavi Subhraveti, Víctor H. Tierrafría, Alan J. Wolfe, Julio Collado‐Vides, Ian T. Paulsen, Peter D. Karp	146
7	The Time Is Right to Focus on Model Organism Metabolomes 2016 ·Metabolites ·Arthur S. Edison, Robert D. Hall, Christophe Junot, Peter D. Karp, Irwin J. Kurland, Robert Mistrík, Laura K Reed, Kazuki Saito, Reza M. Salek, Christoph Steinbeck, Lloyd W. Sumner, Mark R. Viant	51
8	Computing minimal nutrient sets from metabolic networks via linear constraint solving 2013 ·BMC Bioinformatics ·Steven Eker, Markus Krummenacker, Alexander G. Shearer, Ashish Tiwari, Ingrid M. Keseler, Carolyn Talcott, Peter D. Karp	4
9	A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information breakdown → 2007 ·Molecular Systems Biology ·Adam M. Feist, Christopher S. Henry, Jennifer L. Reed, Markus Krummenacker, Andrew R. Joyce, Peter D. Karp, Linda J. Broadbelt, Vassily Hatzimanikatis, Bernhard Ø. Palsson	1044
10	A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases 2004 ·BMC Bioinformatics ·Michelle Green, Peter D. Karp	191
11	Pathway Databases: A Case Study in Computational Symbolic Theories 2001 ·Science ·Peter D. Karp	157
12	Global Properties of the Metabolic Map of Escherichia coli 2000 ·Genome Research ·Christos Ouzounis, Peter D. Karp	71
13	OKBC: a programmatic foundation for knowledge base interoperability 1998 ·National Conference on Artificial Intelligence ·Vinay K. Chaudhri, Adam Farquhar, Richard Fikes, Peter D. Karp, James P. Rice	196
14	Querying Schema Information. 1997 ·Vinay K. Chaudhri, Peter D. Karp	1
15	EcoCyc: an encyclopedia of Escherichia coli genes and metabolism 1996 ·Nucleic Acids Research ·Peter D. Karp	76
16	Knowledge representation in the large 1995 ·International Joint Conference on Artificial Intelligence ·Peter D. Karp, Suzanne Paley	11
17	A Strategy for Database Interoperation 1995 ·Journal of Computational Biology ·Peter D. Karp	66
18	The generic frame protocol 1995 ·International Joint Conference on Artificial Intelligence ·Peter D. Karp, Karen L. Myers, Tom Gruber	51
19	A qualitative biochemistry and its application to the regulation of the tryptophan operon 1993 ·Peter D. Karp	20
20	Coordinating the use of qualitative and quantitative knowledge in declarative device modeling 1989 ·John Wiley & Sons, Inc. eBooks ·Peter D. Karp, (unknown)	11

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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