Markus Krummenacker

16.5k total citations · 7 hit papers
41 papers, 9.5k citations indexed

About

Markus Krummenacker is a scholar working on Molecular Biology, Biomedical Engineering and Computational Theory and Mathematics. According to data from OpenAlex, Markus Krummenacker has authored 41 papers receiving a total of 9.5k indexed citations (citations by other indexed papers that have themselves been cited), including 40 papers in Molecular Biology, 6 papers in Biomedical Engineering and 4 papers in Computational Theory and Mathematics. Recurrent topics in Markus Krummenacker's work include Microbial Metabolic Engineering and Bioproduction (32 papers), Bioinformatics and Genomic Networks (24 papers) and Genomics and Phylogenetic Studies (8 papers). Markus Krummenacker is often cited by papers focused on Microbial Metabolic Engineering and Bioproduction (32 papers), Bioinformatics and Genomic Networks (24 papers) and Genomics and Phylogenetic Studies (8 papers). Markus Krummenacker collaborates with scholars based in United States, Mexico and Australia. Markus Krummenacker's co-authors include Peter D. Karp, Suzanne Paley, Ingrid M. Keseler, Mario Latendresse, Ron Caspi, Anamika Kothari, Pallavi Subhraveti, Richard Billington, Carol A. Fulcher and Quang Ong and has published in prestigious journals such as Nucleic Acids Research, SHILAP Revista de lepidopterología and Bioinformatics.

In The Last Decade

Markus Krummenacker

41 papers receiving 9.4k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

2015 1.9k citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information

2007 1.0k citations Adam M. Feist, Christopher S. Henry et al. Molecular Systems Biology profile →
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

2013 867 citations Ron Caspi, Tomer Altman et al. Nucleic Acids Research profile →
The MetaCyc database of metabolic pathways and enzymes - a 2019 update

2019 795 citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
The MetaCyc database of metabolic pathways and enzymes

2017 597 citations Ron Caspi, Richard Billington et al. Nucleic Acids Research profile →
The BioCyc collection of microbial genomes and metabolic pathways

2017 594 citations Peter D. Karp, Richard Billington et al. profile →
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

2009 538 citations Peter D. Karp, Suzanne Paley et al. profile →

Peers

Countries citing papers authored by Markus Krummenacker

Since Specialization

Citations

This map shows the geographic impact of Markus Krummenacker's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Markus Krummenacker with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Markus Krummenacker more than expected).

Fields of papers citing papers by Markus Krummenacker

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Markus Krummenacker. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Markus Krummenacker. The network helps show where Markus Krummenacker may publish in the future.

Co-authorship network of co-authors of Markus Krummenacker

This figure shows the co-authorship network connecting the top 25 collaborators of Markus Krummenacker. A scholar is included among the top collaborators of Markus Krummenacker based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Markus Krummenacker. Markus Krummenacker is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	The Genome Explorer genome browser 2024 ·mSystems ·(unknown), Markus Krummenacker, Aaron Spaulding, Paul E. O’Maille, Peter D. Karp	3
2	Pathway Tools Management of Pathway/Genome Data for Microbial Communities 2022 ·SHILAP Revista de lepidopterología ·Peter D. Karp, Suzanne Paley, Markus Krummenacker, Anamika Kothari, Michael J. Wannemuehler, Gregory J. Phillips	10
3	The EcoCyc Database in 2021 2021 ·Frontiers in Microbiology ·Ingrid M. Keseler, Socorro Gama‐Castro, Amanda Mackie, Richard Billington, César Bonavides-Martínez, Ron Caspi, Anamika Kothari, Markus Krummenacker, Peter Midford, Luis Muñiz-Rascado, Wai Kit Ong, Suzanne Paley, Alberto Santos-Zavaleta, Pallavi Subhraveti, Víctor H. Tierrafría, Alan J. Wolfe, Julio Collado‐Vides, Ian T. Paulsen, Peter D. Karp	146
4	Leveraging Curation Among Escherichia coli Pathway/Genome Databases Using Ortholog-Based Annotation Propagation 2021 ·Frontiers in Microbiology ·Suzanne Paley, Ingrid M. Keseler, Markus Krummenacker, Peter D. Karp	4
5	A Comparison of Microbial Genome Web Portals 2019 ·Frontiers in Microbiology ·Peter D. Karp, Natalia Ivanova, Markus Krummenacker, Nikos C. Kyrpides, Mario Latendresse, Peter Midford, Wai Kit Ong, Suzanne Paley, R. Seshadri	18
6	BioCyc: A Genomic and Metabolic Web Portal with Multiple Omics Analytical Tools 2019 ·The FASEB Journal ·Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter Midford, Wai Kit Ong, Suzanne Paley, Pallavi Subhraveti, Peter D. Karp	8
7	Metabolic route computation in organism communities 2019 ·Microbiome ·Markus Krummenacker, Mario Latendresse, Peter D. Karp	4
8	The MetaCyc database of metabolic pathways and enzymes breakdown → 2017 ·Nucleic Acids Research ·Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter Midford, Quang Ong, Wai Kit Ong, Suzanne Paley, Pallavi Subhraveti, Peter D. Karp	597
9	The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases breakdown → 2015 ·Nucleic Acids Research ·Ron Caspi, Richard Billington, Luciana Ferrer, Hartmut Foerster, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne Paley, Pallavi Subhraveti, Daniel Weaver, Peter D. Karp	1906
10	Computing minimal nutrient sets from metabolic networks via linear constraint solving 2013 ·BMC Bioinformatics ·Steven Eker, Markus Krummenacker, Alexander G. Shearer, Ashish Tiwari, Ingrid M. Keseler, Carolyn Talcott, Peter D. Karp	4
11	The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases breakdown → 2013 ·Nucleic Acids Research ·Ron Caspi, Tomer Altman, Richard Billington, Kate Dreher, Hartmut Foerster, Carol A. Fulcher, Timothy A. Holland, Ingrid M. Keseler, Anamika Kothari, (unknown), Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne Paley, Pallavi Subhraveti, Daniel Weaver, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp	867
12	The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases 2011 ·Nucleic Acids Research ·Rachel R Caspi, Tomer Altman, Kate Dreher, CA Fulcher, Pallavi Subhraveti, Ingrid M. Keseler, A Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne Paley, Anuradha Pujar, Alexander G. Shearer, Michael Travers, Deepika Weerasinghe, (unknown), Peter D. Karp	457
13	What we can learn about Escherichia coli through application of Gene Ontology 2009 ·Trends in Microbiology ·James C. Hu, Peter D. Karp, Ingrid M. Keseler, Markus Krummenacker, Deborah A. Siegele	8
14	The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases 2009 ·Nucleic Acids Research ·Ron Caspi, Tomer Altman, (unknown), Kate Dreher, Carol A. Fulcher, (unknown), (unknown), Athikkattuvalasu S. Karthikeyan, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Suzanne Paley, Liviu Popescu, Anuradha Pujar, Alexander G. Shearer, Peifen Zhang, Peter D. Karp	376
15	EcoCyc: A comprehensive view of Escherichia coli biology 2008 ·Nucleic Acids Research ·Ingrid M. Keseler, César Bonavides-Martínez, Julio Collado‐Vides, Socorro Gama‐Castro, Robert P. Gunsalus, Daniel Johnson, Markus Krummenacker, Laura M. Nolan, Suzanne Paley, Ian T. Paulsen, Martín Peralta-Gil, Alberto Santos-Zavaleta, Alexander G. Shearer, Peter D. Karp	275
16	A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information breakdown → 2007 ·Molecular Systems Biology ·Adam M. Feist, Christopher S. Henry, Jennifer L. Reed, Markus Krummenacker, Andrew R. Joyce, Peter D. Karp, Linda J. Broadbelt, Vassily Hatzimanikatis, Bernhard Ø. Palsson	1044
17	Multidimensional annotation of the Escherichia coli K-12 genome 2007 ·Nucleic Acids Research ·Peter D. Karp, Ingrid M. Keseler, Alexander G. Shearer, Mario Latendresse, Markus Krummenacker, Suzanne Paley, Ian T. Paulsen, Julio Collado‐Vides, Socorro Gama‐Castro, Martín Peralta-Gil, Alberto Santos-Zavaleta, (unknown), César Bonavides-Martínez, John Ingraham	136
18	Querying and computing with BioCyc databases 2005 ·Computer applications in the biosciences ·Markus Krummenacker, Suzanne Paley, Lukas A. Mueller, Tingting Yan, Peter D. Karp	51
19	EcoCyc: Enyclopedia of Escherichia coli Genes and Metabolism 1997 ·Nucleic Acids Research ·Peter D. Karp, Margaret A. Riley, Suzanne Paley, (unknown), Markus Krummenacker	26
20	Prospects in nanotechnology: toward molecular manufacturing 1995 ·John Wiley & Sons, Inc. eBooks ·Markus Krummenacker, James R. Lewis	14

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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