Sofie R. Salama

21.7k total citations · 2 hit papers
52 papers, 4.6k citations indexed

About

Sofie R. Salama is a scholar working on Molecular Biology, Cancer Research and Genetics. According to data from OpenAlex, Sofie R. Salama has authored 52 papers receiving a total of 4.6k indexed citations (citations by other indexed papers that have themselves been cited), including 38 papers in Molecular Biology, 16 papers in Cancer Research and 8 papers in Genetics. Recurrent topics in Sofie R. Salama's work include Genomics and Phylogenetic Studies (8 papers), RNA and protein synthesis mechanisms (8 papers) and RNA modifications and cancer (8 papers). Sofie R. Salama is often cited by papers focused on Genomics and Phylogenetic Studies (8 papers), RNA and protein synthesis mechanisms (8 papers) and RNA modifications and cancer (8 papers). Sofie R. Salama collaborates with scholars based in United States, Denmark and Costa Rica. Sofie R. Salama's co-authors include David Haussler, Ed Harlow, Sol Katzman, John Blenis, Diane C. Fingar, Adam Siepel, Andrew D. Kern, Gill Bejerano, Craig B. Lowe and Katherine S. Pollard and has published in prestigious journals such as Nature, Science and Proceedings of the National Academy of Sciences.

In The Last Decade

Sofie R. Salama

50 papers receiving 4.5k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Mammalian cell size is controlled by mTOR and its downstream targets S6K1 and 4EBP1/eIF4E

2002 872 citations Sofie R. Salama et al. profile →
An RNA gene expressed during cortical development evolved rapidly in humans

2006 672 citations Katherine S. Pollard, Sofie R. Salama et al. Nature profile →

Peers

Countries citing papers authored by Sofie R. Salama

Since Specialization

Citations

This map shows the geographic impact of Sofie R. Salama's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Sofie R. Salama with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Sofie R. Salama more than expected).

Fields of papers citing papers by Sofie R. Salama

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Sofie R. Salama. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Sofie R. Salama. The network helps show where Sofie R. Salama may publish in the future.

Co-authorship network of co-authors of Sofie R. Salama

This figure shows the co-authorship network connecting the top 25 collaborators of Sofie R. Salama. A scholar is included among the top collaborators of Sofie R. Salama based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Sofie R. Salama. Sofie R. Salama is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	A feedback-driven brain organoid platform enables automated maintenance and high-resolution neural activity monitoring 2025 ·Internet of Things ·(unknown), (unknown), (unknown), (unknown), Tjitse van der Molen, Sebastian Hernandez, H. Schweiger, (unknown), (unknown), (unknown), Sebastián Torres, (unknown), (unknown), Tal Sharf, David Haussler, Mohammed A. Mostajo-Radji, Sofie R. Salama, Mircea Teodorescu	4
2	Single molecule nanopore counting assay targeting small extracellular vesicle cargo for non-invasive monitoring of cerebral organoid development and health 2025 ·Scientific Reports ·(unknown), R. Xu, (unknown), (unknown), (unknown), (unknown), (unknown), Zachary J. Walker, (unknown), (unknown), Thomas D. Yuzvinsky, Aaron R. Hawkins, Sofie R. Salama, (unknown), (unknown), Holger Schmidt	0
3	Comparative analysis of RNA expression in a single institution cohort of pediatric cancer patients 2025 ·npj Precision Oncology ·(unknown), Holly C. Beale, Lauren Sanders, (unknown), Ellen Kephart, Katrina Learned, (unknown), (unknown), Amy Li, Min Huang, Kimberly A. Pyke‐Grimm, Sofie R. Salama, David Haussler, (unknown), (unknown), Olena M. Vaske	1
4	Gamifying cell culture training: The ‘Seru-Otchi’ experience for undergraduates 2024 ·Heliyon ·(unknown), (unknown), (unknown), (unknown), Sofie R. Salama, Sri Kurniawan, (unknown)	2
5	Machine learning multi-omics analysis reveals cancer driver dysregulation in pan-cancer cell lines compared to primary tumors 2022 ·Communications Biology ·Lauren Sanders, (unknown), Navid Zebarjadi, Holly C. Beale, (unknown), Analiz Rodriguez, Ellen Kephart, Jacob Pfeil, (unknown), Katrina Learned, Robert Currie, Leonid Gitlin, David Vengerov, David Haussler, Sofie R. Salama, Olena M. Vaske	6
6	The Complexity of the Mammalian Transcriptome 2022 ·Advances in experimental medicine and biology ·Sofie R. Salama	2
7	The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets 2021 ·GigaScience ·Holly C. Beale, (unknown), (unknown), (unknown), (unknown), Katrina Learned, (unknown), Ellen Kephart, Robert Currie, (unknown), Lauren Sanders, Jacob Pfeil, John Vivian, (unknown), Sofie R. Salama, David Haussler, Olena M. Vaske	4
8	A Functional Precision Medicine Pipeline Combines Comparative Transcriptomics and Tumor Organoid Modeling to Identify Bespoke Treatment Strategies for Glioblastoma 2021 ·Cells ·Megan R. Reed, (unknown), (unknown), Leena Maddukuri, Katrina Learned, Holly C. Beale, Ellen Kephart, (unknown), Anouk van den Bout, (unknown), (unknown), Ashley M. Smith, Teresa M. DesRochers, Cecile Rose T. Vibat, Murat Gökden, Sofie R. Salama, Christopher P. Wardell, Robert L. Eoff, Olena M. Vaske, Analiz Rodriguez	15
9	Picroscope: low-cost system for simultaneous longitudinal biological imaging 2021 ·Communications Biology ·(unknown), (unknown), Pattawong Pansodtee, (unknown), (unknown), (unknown), Helen Rankin Willsey, Gary L. Mantalas, (unknown), John Selberg, (unknown), Jayden Ross, Marco Rolandi, Alex A. Pollen, Tomasz J. Nowakowski, David Haussler, Mohammed A. Mostajo-Radji, Sofie R. Salama, Mircea Teodorescu	11
10	Hydra: A mixture modeling framework for subtyping pediatric cancer cohorts using multimodal gene expression signatures 2020 ·PLoS Computational Biology ·Jacob Pfeil, Lauren Sanders, Ioannis N. Anastopoulos, (unknown), Alana S. Weinstein, (unknown), Andrew P. Blair, Holly C. Beale, Alex Lee, Stanley G. Leung, Phuong Dinh, Avanthi Tayi Shah, Marcus R. Breese, W. Patrick Devine, (unknown), Sofie R. Salama, E. Alejandro Sweet‐Cordero, David Haussler, Olena M. Vaske	1
11	Co-option of the lineage-specific LAVA retrotransposon in the gibbon genome 2020 ·Proceedings of the National Academy of Sciences ·Mariam Okhovat, Kimberly A. Nevonen, Brett A. Davis, (unknown), Samantha Ward, (unknown), Lana Harshman, (unknown), Jason D. Fernandes, Sofie R. Salama, Rachel J. O’Neill, Nadav Ahituv, Krishna R. Veeramah, Lucia Carbone	12
12	A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations 2018 ·Frontiers in Immunology ·Jugmohit Toor, Arjun A. Rao, Andrew C. McShan, Mark Yarmarkovich, Santrupti Nerli, (unknown), (unknown), Son Nguyen, Sarvind Tripathi, John M. Maris, Sofie R. Salama, David Haussler, Nikolaos G. Sgourakis	19
13	TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal 2017 ·Cancer Research ·Yulia Newton, Adam M. Novak, Teresa Swatloski, (unknown), Sahil Chopra, Kiley Graim, Alana S. Weinstein, Robert Baertsch, Sofie R. Salama, Kyle Ellrott, (unknown), Theodore C. Goldstein, David Haussler, Olena Morozova, Joshua M. Stuart	41
14	SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data 2015 ·RNA ·(unknown), (unknown), Sofie R. Salama, Anders Krogh, Jeppe Vinther	44
15	Double Minute Chromosomes in Glioblastoma Multiforme Are Revealed by Precise Reconstruction of Oncogenic Amplicons 2013 ·Cancer Research ·Zack Sanborn, Sofie R. Salama, Mia Grifford, Cameron Brennan, Tom Mikkelsen, Suresh C. Jhanwar, Sol Katzman, Lynda Chin, David Haussler	73
16	Gene Isoform Specificity through Enhancer-Associated Antisense Transcription 2012 ·PLoS ONE ·Courtney Onodera, Jason G. Underwood, Sol Katzman, Frank M. J. Jacobs, David Greenberg, Sofie R. Salama, David Haussler	21
17	Endangered Species Hold Clues to Human Evolution 2010 ·Journal of Heredity ·Craig B. Lowe, Gill Bejerano, Sofie R. Salama, David Haussler	5
18	A distal enhancer and an ultraconserved exon are derived from a novel retroposon 2006 ·Nature ·Gill Bejerano, Craig B. Lowe, Nadav Ahituv, Bryan H. King, Adam Siepel, Sofie R. Salama, Edward M. Rubin, W. James Kent, David Haussler	389
19	An RNA gene expressed during cortical development evolved rapidly in humans breakdown → 2006 ·Nature ·Katherine S. Pollard, Sofie R. Salama, Nelle Lambert, Marie-Alexandra Lambot, Sandra Coppens, Jakob Skou Pedersen, Sol Katzman, Brian F. King, Courtney Onodera, Adam Siepel, Andrew D. Kern, Colette Dehay, Haller Igel, Manuel Ares, Pierre Vanderhaeghen, David Haussler	672
20	[8] Use of fusions to human thymidine kinase as reporters of gene expression and protein stability in Saccharomyces cerevisiae 2000 ·Methods in enzymology on CD-ROM/Methods in enzymology ·Sofie R. Salama	0

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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