Shiri Freilich

4.4k total citations · 2 hit papers
53 papers, 2.4k citations indexed

About

Shiri Freilich is a scholar working on Molecular Biology, Plant Science and Ecology. According to data from OpenAlex, Shiri Freilich has authored 53 papers receiving a total of 2.4k indexed citations (citations by other indexed papers that have themselves been cited), including 30 papers in Molecular Biology, 16 papers in Plant Science and 12 papers in Ecology. Recurrent topics in Shiri Freilich's work include Microbial Metabolic Engineering and Bioproduction (15 papers), Bioinformatics and Genomic Networks (11 papers) and Microbial Community Ecology and Physiology (10 papers). Shiri Freilich is often cited by papers focused on Microbial Metabolic Engineering and Bioproduction (15 papers), Bioinformatics and Genomic Networks (11 papers) and Microbial Community Ecology and Physiology (10 papers). Shiri Freilich collaborates with scholars based in Israel, United States and China. Shiri Freilich's co-authors include Eytan Ruppin, Uri Gophna, Roded Sharan, Anat Kreimer, Mark Mazzola, Raphy Zarecki, Martin Kupiec, Christopher S. Henry, E. Segal and Elhanan Borenstein and has published in prestigious journals such as Nucleic Acids Research, Nature Communications and Bioinformatics.

In The Last Decade

Shiri Freilich

53 papers receiving 2.4k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Competitive and cooperative metabolic interactions in bacterial communities

2011 392 citations Shiri Freilich, Raphy Zarecki et al. profile →
Engineering natural microbiomes toward enhanced bioremediation by microbiome modeling

2024 92 citations Zhepu Ruan, Pengfa Li et al. profile →

Peers

Shiri Freilich

ECOLO

POLLU

Marco Pagni Switzerland

Neha Varghese United States

Fábio O. Pedrosa Brazil

Kenji Uéda Japan

Hélène Touzet France

Alessio Papini Italy

Min He China

Vasanth Singan United States

Micheline Vandenbol Belgium

Marco Pagni Switzerland

Shiri Freilich

1.4k ×1.1

937 ×1.3

288 ×0.6

ECOLO

113 ×0.4

POLLU

210 ×0.9

Citations per year, relative to Shiri Freilich Shiri Freilich (= 1×) peers Marco Pagni

Countries citing papers authored by Shiri Freilich

Since Specialization

Citations

This map shows the geographic impact of Shiri Freilich's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Shiri Freilich with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Shiri Freilich more than expected).

Fields of papers citing papers by Shiri Freilich

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Shiri Freilich. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Shiri Freilich. The network helps show where Shiri Freilich may publish in the future.

Co-authorship network of co-authors of Shiri Freilich

This figure shows the co-authorship network connecting the top 25 collaborators of Shiri Freilich. A scholar is included among the top collaborators of Shiri Freilich based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Shiri Freilich. Shiri Freilich is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Medina, Shlomit, Itai Sharon, Ofir Tal, et al.. (2024). A metabolic modeling-based framework for predicting trophic dependencies in native rhizobiomes of crop plants. eLife. 13. 1 indexed citations

Medina, Shlomit, Itai Sharon, Ofir Tal, et al.. (2024). A metabolic modeling-based framework for predicting trophic dependencies in native rhizobiomes of crop plants. eLife. 13. 6 indexed citations

Freilich, Shiri, et al.. (2023). The rise of the sourdough: Genome-scale metabolic modeling-based approach to design sourdough starter communities with tailored-made properties. International Journal of Food Microbiology. 407. 110402–110402. 7 indexed citations

Yu, Xin, Ping Gao, Lei Xia, et al.. (2023). Flexible catabolism of monoaromatic hydrocarbons by anaerobic microbiota adapting to oxygen exposure. Journal of Hazardous Materials. 462. 132762–132762. 12 indexed citations

Somera, Tracey, Assaf Malik, Shlomit Medina, et al.. (2023). A framework for the targeted recruitment of crop-beneficial soil taxa based on network analysis of metagenomics data. Microbiome. 11(1). 8–8. 25 indexed citations

Medina, Shlomit, Shoshana Salim, Oleg Feygenberg, et al.. (2023). Functional analysis of the apple fruit microbiome based on shotgun metagenomic sequencing of conventional and organic orchard samples. Environmental Microbiology. 25(9). 1728–1746. 15 indexed citations

Li, Pengfa, Xin Yu, Wenjing Qiao, et al.. (2022). Electron acceptors determine the BTEX degradation capacity of anaerobic microbiota via regulating the microbial community. Environmental Research. 215(Pt 3). 114420–114420. 28 indexed citations

Ofaim, Shany, Raphy Zarecki, Daniella Gat, et al.. (2020). Genome-scale reconstruction of Paenarthrobacter aurescens TC1 metabolic model towards the study of atrazine bioremediation. Scientific Reports. 10(1). 13019–13019. 25 indexed citations

Opatovsky, Itai, Diego Santos-García, Zhepu Ruan, et al.. (2018). Modeling trophic dependencies and exchanges among insects’ bacterial symbionts in a host-simulated environment. BMC Genomics. 19(1). 402–402. 34 indexed citations

10.

Santos-García, Diego, Shiri Freilich, Einat Zchori‐Fein, et al.. (2018). To B or Not to B: Comparative Genomics Suggests Arsenophonus as a Source of B Vitamins in Whiteflies. Frontiers in Microbiology. 9. 2254–2254. 46 indexed citations

11.

Ofaim, Shany, Maya Ofek‐Lalzar, Noa Sela, et al.. (2017). Analysis of Microbial Functions in the Rhizosphere Using a Metabolic-Network Based Framework for Metagenomics Interpretation. Frontiers in Microbiology. 8. 1606–1606. 49 indexed citations

12.

Freilich, Shiri, Shery Lev, Itay Gonda, et al.. (2015). Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits. BMC Plant Biology. 15(1). 71–71. 35 indexed citations

13.

Levy, Roie, Rogan Carr, Anat Kreimer, Shiri Freilich, & Elhanan Borenstein. (2015). NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation. BMC Bioinformatics. 16(1). 164–164. 66 indexed citations

14.

Persi, Erez, et al.. (2012). Peptide markers of aminoacyl tRNA synthetases facilitate taxa counting in metagenomic data. BMC Genomics. 13(1). 65–65. 2 indexed citations

15.

Ainali, Chrysanthi, Michelle Simon, Shiri Freilich, et al.. (2011). Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins. BMC Evolutionary Biology. 11(1). 142–142. 2 indexed citations

16.

Tuller, Tamir, et al.. (2011). Association between translation efficiency and horizontal gene transfer within microbial communities. Nucleic Acids Research. 39(11). 4743–4755. 83 indexed citations

17.

Freilich, Shiri, Anat Kreimer, Elhanan Borenstein, et al.. (2010). Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species. PLoS Computational Biology. 6(2). e1000690–e1000690. 29 indexed citations

18.

Freilich, Shiri, Anat Kreimer, Elhanan Borenstein, et al.. (2009). Metabolic-network-driven analysis of bacterial ecological strategies. Genome biology. 10(6). R61–R61. 82 indexed citations

19.

Freeman, Tom C., Leon Goldovsky, Markus Brosch, et al.. (2007). Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data. PLoS Computational Biology. 3(10). e206–e206. 176 indexed citations

20.

Freilich, Shiri, Efrat Oron, Yael Nevo‐Caspi, et al.. (1999). The COP9 signalosome is essential for development of Drosophila melanogaster. Current Biology. 9(20). 1187–S4. 124 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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