Neha Varghese

8.0k citations

42 papers · 3.3k indexed · 6 hit papers · h-index 17

Co-authors: Nikos C. Kyrpides Natalia Ivanova Marcel Huntemann Krishna Palaniappan I-Min A. Chen Anna Ratner Ken Chu Jinghua Huang
Topics: Genomics and Phylogenetic Studies (29 papers)Microbial Community Ecology and Physiology (21 papers)Legume Nitrogen Fixing Symbiosis (7 papers)
Cited by: Ecology Molecular Biology Endocrinology
Journals: Science Nucleic Acids Research PLoS ONE
Partner nations: United States United Kingdom Germany

In The Last Decade

Neha Varghese

40 papers receiving 3.3k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

2018 583 citations I-Min A. Chen, Ken Chu et al. Nucleic Acids Research profile →
Microbial species delineation using whole genome sequences

2015 503 citations Neha Varghese, Supratim Mukherjee et al. Nucleic Acids Research profile →
IMG 4 version of the integrated microbial genomes comparative analysis system

2013 431 citations Victor Markowitz, I-Min A. Chen et al. Nucleic Acids Research profile →
Protein structure determination using metagenome sequence data

2017 350 citations Sergey Ovchinnikov, Hahnbeom Park et al. Science profile →
IMG/M: integrated genome and metagenome comparative data analysis system

2016 331 citations I-Min A. Chen, Victor Markowitz et al. Nucleic Acids Research profile →
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities

2020 287 citations I-Min A. Chen, Ken Chu et al. Nucleic Acids Research profile →

Peers

Countries citing papers authored by Neha Varghese

Since Specialization

Citations

This map shows the geographic impact of Neha Varghese's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Neha Varghese with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Neha Varghese more than expected).

Fields of papers citing papers by Neha Varghese

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Neha Varghese. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Neha Varghese. The network helps show where Neha Varghese may publish in the future.

Co-authorship network of co-authors of Neha Varghese

This figure shows the co-authorship network connecting the top 25 collaborators of Neha Varghese. A scholar is included among the top collaborators of Neha Varghese based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Neha Varghese. Neha Varghese is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	A standardized quantitative analysis strategy for stable isotope probing metagenomics 2023 ·mSystems ·(unknown),(unknown),Kanwar Singh,(unknown),W. Berkeley Kauffman,Erin Nuccio,Steven J. Blazewicz,Jennifer Pett‐Ridge,Katherine Louie,Neha Varghese,Matthew Kellom,Alicia Clum,Robert Riley,Simon Roux,Emiley A. Eloe‐Fadrosh,Ryan Ziels,Rex R. Malmstrom	8
2	Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms 2023 ·Data in Brief ·(unknown),Kerrie Barry,Chris Daum,Emiley A. Eloe‐Fadrosh,Simon Roux,Katrin Schmidt,Susannah G. Tringe,Klaus-Ulrich Valentin,Neha Varghese,Asaf Salamov,Igor V. Grigoriev,Richard M. Leggett,Vincent Moulton,Thomas Möck	0
3	Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018 2023 ·Frontiers in Microbiology ·Agnieszka Klonowska,Julie Ardley,Lionel Moulin,(unknown),Delphine Patrel,(unknown),Дора Маринова,T. B. K. Reddy,Neha Varghese,Marcel Huntemann,Tanja Woyke,R. Seshadri,Natalia Ivanova,Nikos C. Kyrpides,Wayne Reeve	1
4	Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans 2022 ·Microbiome ·(unknown),Kerrie Barry,Chris Daum,Emiley A. Eloe‐Fadrosh,Simon Roux,Katrin Schmidt,Susannah G. Tringe,Klaus-Ulrich Valentin,Neha Varghese,Asaf Salamov,Igor V. Grigoriev,Richard M. Leggett,Vincent Moulton,Thomas Möck	26
5	Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria 2021 ·Microbiology Resource Announcements ·(unknown),Jason Stajich,Jeffrey R. Johansen,Marcel Huntemann,Alicia Clum,Brian Foster,Bryce Foster,Simon Roux,Krishna Palaniappan,Neha Varghese,Supratim Mukherjee,T. B. K. Reddy,Chris Daum,Alex Copeland,(unknown),Natalia Ivanova,Nikos C. Kyrpides,Nicole Shapiro,Emiley A. Eloe‐Fadrosh,Nicole Pietrasiak	17
6	Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil 2020 ·BMC Genomics ·Agnieszka Klonowska,Lionel Moulin,Julie Ardley,(unknown),(unknown),(unknown),Дора Маринова,Marcel Huntemann,T. B. K. Reddy,Neha Varghese,Tanja Woyke,Natalia Ivanova,R. Seshadri,Nikos C. Kyrpides,Wayne Reeve	29
7	High-quality draft genome sequences of Pseudomonas monteilii DSM 14164T, Pseudomonas mosselii DSM 17497T, Pseudomonas plecoglossicida DSM 15088T, Pseudomonas taiwanensis DSM 21245T and Pseudomonas vranovensis DSM 16006T: taxonomic considerations 2019 ·Access Microbiology ·Arantxa Peña,Antonio Busquets,Margarita Gomila,Magdalena Mulet,Rosa M. Gomila,Elena García‐Valdés,T. B. K. Reddy,Marcel Huntemann,Neha Varghese,Natalia Ivanova,I-Min A. Chen,Markus Göker,Tanja Woyke,Hans‐Peter Klenk,Nikos C. Kyrpides,Jorge Lalucat	4
8	High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants 2018 ·Microbiology Resource Announcements ·(unknown),Hannah E. Beatty,(unknown),Marcel Huntemann,Alicia Clum,Alex Spunde,Manoj Pillay,Krishna Palaniappan,Neha Varghese,Natalia Mikhailova,Dimitrios Stamatis,T. B. K. Reddy,Chris Daum,Vivian Ng,Natalia Ivanova,Nikos C. Kyrpides,Tanja Woyke,Jonathan L. Klassen	2
9	Protein structure determination using metagenome sequence databreakdown → 2017 ·Science ·Sergey Ovchinnikov,Hahnbeom Park,Neha Varghese,Po‐Ssu Huang,Georgios A. Pavlopoulos,David E. Kim,Hetunandan Kamisetty,Nikos C. Kyrpides,David Baker	350
10	High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr 2017 ·Standards in Genomic Sciences ·Wayne Reeve,Peter van Berkum,Julie Ardley,Rui Tian,(unknown),Дора Маринова,(unknown),T. B. K. Reddy,Manoj Pillay,Neha Varghese,R. Seshadri,Natalia Ivanova,Tanja Woyke,(unknown),Nabih A. Baeshen,Nikos C. Kyrpides	10
11	High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia 2017 ·Standards in Genomic Sciences ·Agnieszka Klonowska,Aline López-López,Lionel Moulin,Julie Ardley,(unknown),Дора Маринова,Rui Tian,Marcel Huntemann,T. B. K. Reddy,Neha Varghese,Tanja Woyke,Victor Markowitz,Natalia Ivanova,R. Seshadri,(unknown),Nabih A. Baeshen,Nikos C. Kyrpides,Wayne Reeve	2
12	Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria 2017 ·Standards in Genomic Sciences ·(unknown),Marcel Huntemann,Alicia Clum,Manoj Pillay,Krishna Palaniappan,Neha Varghese,Natalia Mikhailova,Dimitrios Stamatis,T. B. K. Reddy,Chris Daum,Nicole Shapiro,Natalia Ivanova,Nikos C. Kyrpides,Tanja Woyke,Rich Boden	34
13	High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698) 2017 ·Standards in Genomic Sciences ·(unknown),Nicolai Müller,Bernhard Schink,William B. Whitman,Marcel Huntemann,Alicia Clum,Manoj Pillay,Krishna Palaniappan,Neha Varghese,Natalia Mikhailova,Dimitrios Stamatis,T. B. K. Reddy,Chris Daum,Nicole Shapiro,Natalia Ivanova,Nikos C. Kyrpides,Tanja Woyke,Madan Junghare	3
14	Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica 2017 ·Standards in Genomic Sciences ·Dong Han Choi,(unknown),Alla Lapidus,Alex Copeland,T. B. K. Reddy,Supratim Mukherjee,Marcel Huntemann,Neha Varghese,Natalia Ivanova,Manoj Pillay,Brian J. Tindall,Markus Göker,Tanja Woyke,Hans‐Peter Klenk,Nikos C. Kyrpides,Byung Cheol Cho	1
15	Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium 2017 ·Standards in Genomic Sciences ·(unknown),(unknown),Maskit Maymon,Ethan Humm,Marcel Huntemann,Alicia Clum,Manoj Pillay,Krishna Palaniappan,Neha Varghese,Natalia Mikhailova,Dimitrios Stamatis,T. B. K. Reddy,Victor Markowitz,Natalia Ivanova,Nikos C. Kyrpides,Tanja Woyke,Nicole Shapiro,Ann M. Hirsch,Paulina Estrada‐de los Santos	8
16	Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov. 2017 ·Systematic and Applied Microbiology ·Diogo Neves Proença,William B. Whitman,Neha Varghese,Nicole Shapiro,Tanja Woyke,Nikos C. Kyrpides,Paula V. Morais	16
17	Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia 2016 ·Standards in Genomic Sciences ·Rich Boden,(unknown),Marcel Huntemann,Alicia Clum,Manoj Pillay,Krishna Palaniappan,Neha Varghese,Natalia Mikhailova,Dimitrios Stamatis,T. B. K. Reddy,Chew Yee Ngan,Chris Daum,Nicole Shapiro,Victor Markowitz,Natalia Ivanova,Tanja Woyke,Nikos C. Kyrpides	16
18	IMG/M: integrated genome and metagenome comparative data analysis systembreakdown → 2016 ·Nucleic Acids Research ·I-Min A. Chen,Victor Markowitz,Ken Chu,Krishna Palaniappan,Ernest Szeto,Manoj Pillay,Anna Ratner,Jinghua Huang,Evan Andersen,Marcel Huntemann,Neha Varghese,Michalis Hadjithomas,Kristin Tennessen,Torben Nielsen,Natalia Ivanova,Nikos C. Kyrpides	331
19	Microbial species delineation using whole genome sequencesbreakdown → 2015 ·Nucleic Acids Research ·Neha Varghese,Supratim Mukherjee,Natalia Ivanova,Konstantinos T. Konstantinidis,Konstantinos Mavrommatis,Nikos C. Kyrpides,Amrita Pati	503
20	IMG 4 version of the integrated microbial genomes comparative analysis systembreakdown → 2013 ·Nucleic Acids Research ·Victor Markowitz,I-Min A. Chen,Krishna Palaniappan,Ken Chu,Ernest Szeto,Manoj Pillay,Anna Ratner,Jinghua Huang,Tanja Woyke,Marcel Huntemann,Iain Anderson,Konstantinos Billis,Neha Varghese,Konstantinos Mavromatis,Amrita Pati,Natalia Ivanova,Nikos C. Kyrpides	431

About Neha Varghese

Neha Varghese is a scholar working on Ecology, Molecular Biology and Plant Science, having authored 42 papers that have together received 3.3k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (29 papers), Microbial Community Ecology and Physiology (21 papers) and Legume Nitrogen Fixing Symbiosis (7 papers). The work is most often cited by research in Ecology (1.3k citations), Molecular Biology (2.3k citations) and Endocrinology (134 citations). Neha Varghese has collaborated with scholars based in United States, United Kingdom and Germany. Frequent co-authors include Nikos C. Kyrpides, Natalia Ivanova, Marcel Huntemann, Krishna Palaniappan, I-Min A. Chen, Anna Ratner, Ken Chu, Jinghua Huang, Tanja Woyke and Amrita Pati. Their work appears in journals such as Science, Nucleic Acids Research and PLoS ONE.

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