Stijn van Dongen

16.2k citations

35 papers · 9.6k indexed · 3 hit papers · h-index 24

Molecular Biology top 0.5%
Cancer Research top 0.1%
Plant Science top 2%
Immunology top 2%
Genetics top 5%

Co-authors: Anton J. Enright Harpreet K. Saini Sam Griffiths‐Jones Cei Abreu‐Goodger Russell Grocock Yuichiro Mishima Kunio Inoue Antonio J. Giráldez
Topics: MicroRNA in disease regulation (16 papers)Cancer-related molecular mechanisms research (12 papers)Circular RNAs in diseases (5 papers)
Cited by: Cancer Research Molecular Biology Aging
Journals: Science Nucleic Acids Research Circulation
Partner nations: United Kingdom United States Germany

In The Last Decade

Stijn van Dongen

35 papers receiving 9.4k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

miRBase: tools for microRNA genomics

2007 3.6k citations Harpreet K. Saini, Stijn van Dongen et al. Nucleic Acids Research profile →
Requirement of bic/microRNA-155 for Normal Immune Function

2007 1.6k citations Antony Rodriguez, Elena Vigorito et al. Science profile →
Zebrafish MiR-430 Promotes Deadenylation and Clearance of Maternal mRNAs

2006 1.2k citations Antonio J. Giráldez, Yuichiro Mishima et al. Science profile →

Peers

Countries citing papers authored by Stijn van Dongen

Since Specialization

Citations

This map shows the geographic impact of Stijn van Dongen's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Stijn van Dongen with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Stijn van Dongen more than expected).

Fields of papers citing papers by Stijn van Dongen

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Stijn van Dongen. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Stijn van Dongen. The network helps show where Stijn van Dongen may publish in the future.

Co-authorship network of co-authors of Stijn van Dongen

This figure shows the co-authorship network connecting the top 25 collaborators of Stijn van Dongen. A scholar is included among the top collaborators of Stijn van Dongen based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Stijn van Dongen. Stijn van Dongen is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Transcriptional signals of transformation in human cancer 2024 ·Genome Medicine ·(unknown),(unknown),Rasa Elmentaite,Stijn van Dongen,Christine Thevanesan,Alice Piapi,Kirsty Ambridge,Elena Prigmore,Muzlifah Haniffa,Sarah A. Teichmann,Karin Straathof,Isidro Cortés‐Ciriano,Sam Behjati,Matthew D. Young	3
2	Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench 2021 ·Nucleic Acids Research ·(unknown),Stijn van Dongen,Vladimir Yu Kiselev,Martin Hemberg	48
3	Comparison of visualization tools for single-cell RNAseq data 2020 ·NAR Genomics and Bioinformatics ·Batuhan Çakır,Martin Prete,Ni Huang,Stijn van Dongen,Pınar Pir,Vladimir Yu Kiselev	35
4	Many si/shRNAs can kill cancer cells by targeting multiple survival genes through an off-target mechanism 2017 ·eLife ·William Putzbach,Quan Q. Gao,Monal Patel,Stijn van Dongen,(unknown),Aishe A. Sarshad,Elizabeth T. Bartom,Kwang‐Youn A. Kim,Denise Scholtens,Markus Hafner,Jonathan C. Zhao,Andrea E. Murmann,Marcus E. Peter	46
5	MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni 2017 ·PLoS neglected tropical diseases ·Anna V. Protasio,Stijn van Dongen,Julie Collins,(unknown),Diogo M. Ribeiro,(unknown),Martin Hunt,Gabriel Rinaldi,James J. Collins,Anton J. Enright,Matthew Berriman	23
6	Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests 2017 ·Nucleic Acids Research ·Dimitrios Vitsios,Elissavet Kentepozidou,(unknown),Èlia Benito‐Gutiérrez,Stijn van Dongen,Matthew P. Davis,Anton J. Enright	44
7	Transposon‐driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution 2017 ·EMBO Reports ·Matthew P. Davis,Claudia Carrieri,Harpreet K. Saini,Stijn van Dongen,Tommaso Leonardi,Giovanni Bussotti,Jack Monahan,Tania Auchynnikava,(unknown),Juri Rappsilber,Robin C. Allshire,Alena Shkumatava,Dónal O’Carroll,Anton J. Enright	33
8	LIN28 Expression in Malignant Germ Cell Tumors Downregulates let-7 and Increases Oncogene Levels 2013 ·Cancer Research ·Matthew J. Murray,Harpreet K. Saini,(unknown),(unknown),(unknown),Stijn van Dongen,(unknown),Katie L. Raby,Ian J. Groves,Cinzia G. Scarpini,Mark R. Pett,Claire M. Thornton,Anton J. Enright,James C. Nicholson,Nicholas Coleman	66
9	Kraken: A set of tools for quality control and analysis of high-throughput sequence data 2013 ·Methods ·Matthew P. Davis,Stijn van Dongen,Cei Abreu‐Goodger,Nenad Bartoniček,Anton J. Enright	286
10	Lack of correlation between predicted and actual off-target effects of short-interfering RNAs targeting the human papillomavirus type 16 E7 oncogene 2013 ·British Journal of Cancer ·(unknown),Harpreet K. Saini,Matthew J. Murray,Stijn van Dongen,Matthew P. Davis,(unknown),(unknown),Cinzia G. Scarpini,Anton J. Enright,Mark R. Pett,Nicholas Coleman	15
11	Using MCL to Extract Clusters from Networks 2011 ·Methods in molecular biology ·Stijn van Dongen,Cei Abreu‐Goodger	282
12	Messenger RNA and microRNA profiling during early mouse EB formation 2011 ·Gene Expression Patterns ·Rashmi Tripathi,Harpreet K. Saini,Roland Rad,Cei Abreu‐Goodger,Stijn van Dongen,Anton J. Enright	17
13	Malignant Germ Cell Tumors Display Common MicroRNA Profiles Resulting in Global Changes in Expression of Messenger RNA Targets 2010 ·Cancer Research ·Roger D. Palmer,Matthew J. Murray,Harpreet K. Saini,Stijn van Dongen,Cei Abreu‐Goodger,Balaji Muralidhar,Mark R. Pett,Claire M. Thornton,James C. Nicholson,Anton J. Enright,Nicholas Coleman,(unknown)	217
14	Long- and Short-Term Selective Forces on Malaria Parasite Genomes 2010 ·PLoS Genetics ·Sanne Nygaard,(unknown),(unknown),Stijn van Dongen,Paul P. Gardner,Anders Krogh,Thomas D. Otto,Arnab Pain,Matthew Berriman,Jon McAuliffe,Emmanouil T. Dermitzakis,Daniel Jeffares	20
15	The two most common histological subtypes of malignant germ cell tumour are distinguished by global microRNA profiles, associated with differential transcription factor expression 2010 ·Molecular Cancer ·Matthew J. Murray,Harpreet K. Saini,Stijn van Dongen,Roger D. Palmer,Balaji Muralidhar,Mark R. Pett,Matias Piipari,Claire M. Thornton,James C. Nicholson,Anton J. Enright,Nicholas Coleman	55
16	An ENU-induced mutation of miR-96 associated with progressive hearing loss in mice 2009 ·Nature Genetics ·Morag A. Lewis,Elizabeth Quint,Anne M. Glazier,Helmut Fuchs,Martin Hrabě de Angelis,Cordelia Langford,Stijn van Dongen,Cei Abreu‐Goodger,Matias Piipari,(unknown),Tamás Dalmay,Miguel A. Moreno‐Pelayo,Anton J. Enright,Karen P. Steel	241
17	Requirement of bic/microRNA-155 for Normal Immune Functionbreakdown → 2007 ·Science ·Antony Rodriguez,Elena Vigorito,Simon Clare,Madhuri Warren,Philippe Couttet,Dalya R. Soond,Stijn van Dongen,Russell Grocock,Partha Pratim Das,Eric A. Miska,David Vetrie,Klaus Okkenhaug,Anton J. Enright,Gordon Dougan,Martin Turner,Allan Bradley	1561
18	Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data 2007 ·PLoS Computational Biology ·Tom C. Freeman,Leon Goldovsky,Markus Brosch,Stijn van Dongen,Pierre Mazière,Russell Grocock,Shiri Freilich,Janet M. Thornton,Anton J. Enright	176
19	Zebrafish MiR-430 Promotes Deadenylation and Clearance of Maternal mRNAsbreakdown → 2006 ·Science ·Antonio J. Giráldez,Yuichiro Mishima,Jason Rihel,Russell Grocock,Stijn van Dongen,Kunio Inoue,Anton J. Enright,Alexander F. Schier	1238
20	GeneMCL in microarray analysis 2005 ·Computational Biology and Chemistry ·(unknown),Stijn van Dongen,M. James C. Crabbe	9

About Stijn van Dongen

Stijn van Dongen is a scholar working on Cancer Research, Aging and Sensory Systems, having authored 35 papers that have together received 9.6k indexed citations. Recurring topics across this work include MicroRNA in disease regulation (16 papers), Cancer-related molecular mechanisms research (12 papers) and Circular RNAs in diseases (5 papers). The work is most often cited by research in Cancer Research (5.2k citations), Molecular Biology (6.9k citations) and Aging (105 citations). Stijn van Dongen has collaborated with scholars based in United Kingdom, United States and Germany. Frequent co-authors include Anton J. Enright, Harpreet K. Saini, Sam Griffiths‐Jones, Cei Abreu‐Goodger, Russell Grocock, Yuichiro Mishima, Kunio Inoue, Antonio J. Giráldez, Alexander F. Schier and Jason Rihel. Their work appears in journals such as Science, Nucleic Acids Research and Circulation.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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