Se Jin Song

44.7k total citations · 3 hit papers
51 papers, 4.8k citations indexed

About

Se Jin Song is a scholar working on Molecular Biology, Physiology and Genetics. According to data from OpenAlex, Se Jin Song has authored 51 papers receiving a total of 4.8k indexed citations (citations by other indexed papers that have themselves been cited), including 38 papers in Molecular Biology, 9 papers in Physiology and 9 papers in Genetics. Recurrent topics in Se Jin Song's work include Gut microbiota and health (37 papers), Metabolomics and Mass Spectrometry Studies (8 papers) and Clostridium difficile and Clostridium perfringens research (8 papers). Se Jin Song is often cited by papers focused on Gut microbiota and health (37 papers), Metabolomics and Mass Spectrometry Studies (8 papers) and Clostridium difficile and Clostridium perfringens research (8 papers). Se Jin Song collaborates with scholars based in United States, France and Belgium. Se Jin Song's co-authors include Rob Knight, Jessica L. Metcalf, Amnon Amir, José C. Clemente, Katherine R. Amato, Zhenjiang Zech Xu, Donna Berg-Lyons, J. Gregory Caporaso, Christian L. Lauber and Yoshiki Vázquez‐Baeza and has published in prestigious journals such as Nature Medicine, Nature Communications and SHILAP Revista de lepidopterología.

In The Last Decade

Se Jin Song

45 papers receiving 4.7k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Cohabiting family members share microbiota with one another and with their dogs

2013 760 citations Se Jin Song, Christian L. Lauber et al. profile →
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer

2016 649 citations Maria Gloria Domínguez-Bello, Nan Shen et al. Nature Medicine profile →
Advancing Our Understanding of the Human Microbiome Using QIIME

2013 441 citations José A. Navas-Molina, Juan Manuel Peralta‐Sánchez et al. Methods in enzymology on CD-ROM/Methods in enzymology profile →

Peers

Countries citing papers authored by Se Jin Song

Since Specialization

Citations

This map shows the geographic impact of Se Jin Song's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Se Jin Song with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Se Jin Song more than expected).

Fields of papers citing papers by Se Jin Song

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Se Jin Song. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Se Jin Song. The network helps show where Se Jin Song may publish in the future.

Co-authorship network of co-authors of Se Jin Song

This figure shows the co-authorship network connecting the top 25 collaborators of Se Jin Song. A scholar is included among the top collaborators of Se Jin Song based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Se Jin Song. Se Jin Song is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Calculating fast differential genome coverages among metagenomic sources using micov 2025 ·Communications Biology ·(unknown), (unknown), Daniel McDonald, (unknown), Suzanne Devkota, Evguenia Kopylova, Gregory D. Sepich‐Poore, Rodolfo A. Salido, M. Omar Din, Se Jin Song, Kit Curtius, Hiutung Chu, Andrew Bartko, Jeff Hasty, Rob Knight	0
2	Chronological age estimation from human microbiomes with transformer-based Robust Principal Component Analysis 2025 ·Communications Biology ·(unknown), Se Jin Song, (unknown), Britta De Pessemier, (unknown), Daniel McDonald, Shi Huang, Richard L. Gallo, Chris Callewaert, Aki S. Havulinna, Leo Lahti, Guus Roeselers, Manolo Laiola, Sudarshan A. Shetty, Scott T. Kelley, Rob Knight, Andrew Bartko	0
3	ChIP provides 10-fold microbial DNA enrichment from tissue while minimizing bias 2025 ·Molecular Biology Reports ·Shrikant S. Bhute, Jon G. Sanders, Se Jin Song, Sydney Lavoie, Austin D. Swafford, (unknown), Lucas Patel, Antonio G. González, Michelle Rooks, Rob Knight, Andrew Bartko	1
4	Temporal nutrition analysis associates dietary regularity and quality with gut microbiome diversity: insights from the Food & You digital cohort 2025 ·Nature Communications ·(unknown), (unknown), (unknown), Se Jin Song, Andrew Bartko, Robert J. Knight, Marcel Salathé	0
5	The impact of breastfeeding on the preterm infant’s microbiome and metabolome: a pilot study 2024 ·Pediatric Research ·(unknown), (unknown), Sarah M. Allard, Gertrude Ecklu-Mensah, (unknown), Se Jin Song, Jack A. Gilbert, Lars Bode, Pieter C. Dorrestein, (unknown), David J. Gonzalez, Sydney Leibel, Sandra L. Leibel	0
6	Social behaviour mediates the microbiome response to antibiotic treatment in a wild mammal 2024 ·Proceedings of the Royal Society B Biological Sciences ·Bianca R. P. Brown, Allison E. Williams, (unknown), (unknown), (unknown), Se Jin Song, Rob Knight, Vanessa O. Ezenwa	3
7	Feasibility of Home Collection for Urogenital Microbiome Samples 2024 ·Urogynecology ·Emily S. Lukacz, Cynthia S. Fok, MacKenzie Bryant, (unknown), Melanie Meister, Margaret G. Mueller, Cora E. Lewis, Jerry L. Lowder, Ariana L. Smith, Ann E. Stapleton, (unknown), Ratna Pakpahan, (unknown), Daniel McDonald, Sara Putnam, Kyle Rudser, Se Jin Song, Rob Knight, Linda Brubaker	2
8	Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies 2024 ·mSystems ·Caitriona Brennan, Pedro Belda‐Ferre, Simone Zuffa, (unknown), (unknown), Gail Ackermann, Celeste Allaband, (unknown), (unknown), MacKenzie Bryant, Kalen Cantrell, Antonio López González, Daniel McDonald, Rodolfo A. Salido, Se Jin Song, Gillian Wright, Pieter C. Dorrestein, Rob Knight	3
9	A multi-study analysis enables identification of potential microbial features associated with skin aging signs 2024 ·SHILAP Revista de lepidopterología ·(unknown), Amina Bouslimani, Shi Huang, (unknown), Cécile Clavaud, (unknown), (unknown), Audrey Guéniche, Charbel Bouez, Qian Zheng, Luc Aguilar, Rob Knight, (unknown), Se Jin Song	16
10	Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors 2023 ·Nature Communications ·Julien Tap, Franck Lejzerowicz, Aurélie Cotillard, Matthieu Pichaud, Daniel McDonald, Se Jin Song, Rob Knight, Patrick Veiga, Muriel Derrien	20
11	The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study) 2022 ·Scientific Reports ·(unknown), (unknown), Kelly C. Weldon, (unknown), (unknown), (unknown), Annalee Fürst, Bob Geng, Se Jin Song, Jack A. Gilbert, Lars Bode, Pieter C. Dorrestein, Rob Knight, Sydney Leibel, Sandra L. Leibel	3
12	A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project 2021 ·American Journal of Clinical Nutrition ·Aurélie Cotillard, (unknown), Nicole S. Litwin, (unknown), (unknown), Franck Lejzerowicz, Julien Tap, Hana Koutníková, (unknown), Daniel McDonald, Se Jin Song, Rob Knight, Muriel Derrien, Patrick Veiga	52
13	Early-life gut dysbiosis linked to juvenile mortality in ostriches 2020 ·Microbiome ·Elin Videvall, Se Jin Song, Hanna M. Bensch, Maria Strandh, Anel Engelbrecht, (unknown), Olof Hellgren, Adriaan Olivier, S.W.P. Cloete, Rob Knight, Charlie K. Cornwallis	33
14	Major shifts in gut microbiota during development and its relationship to growth in ostriches 2019 ·Molecular Ecology ·Elin Videvall, Se Jin Song, Hanna M. Bensch, Maria Strandh, Anel Engelbrecht, (unknown), Olof Hellgren, Adriaan Olivier, S.W.P. Cloete, Rob Knight, Charlie K. Cornwallis	50
15	Learning representations of microbe–metabolite interactions 2019 ·Nature Methods ·James T. Morton, Alexander A. Aksenov, Louis‐Félix Nothias, James R. Foulds, Robert A. Quinn, Michelle Badri, Tami L. Swenson, Marc W. Van Goethem, Trent R. Northen, Yoshiki Vázquez‐Baeza, Mingxun Wang, Nicholas A. Bokulich, Aaron Watters, Se Jin Song, Richard Bonneau, Pieter C. Dorrestein, Rob Knight	175
16	Evaluating the impact of domestication and captivity on the horse gut microbiome 2017 ·Scientific Reports ·Jessica L. Metcalf, Se Jin Song, James T. Morton, Sophie Weiss, Andaine Seguin‐Orlando, (unknown), Claudia Feh, Pierre Taberlet, Éric Coissac, Amnon Amir, Eske Willerslev, Rob Knight, Valerie J. McKenzie, Ludovic Orlando	105
17	Tiny microbes, enormous impacts: what matters in gut microbiome studies? 2016 ·Genome biology ·Justine W. Debelius, Se Jin Song, Yoshiki Vázquez‐Baeza, Zhenjiang Zech Xu, Antonio González, Rob Knight	113
18	Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer breakdown → 2016 ·Nature Medicine ·Maria Gloria Domínguez-Bello, (unknown), Nan Shen, Laura M. Cox, Amnon Amir, Antonio G. González, Nicholas A. Bokulich, Se Jin Song, (unknown), Juana I Rivera-Viñas, Keimari Méndez, Rob Knight, José C. Clemente	649
19	Prevalence and genetic diversity of Blastocystis in family units living in the United States 2016 ·Infection Genetics and Evolution ·Pauline D. Scanlan, Rob Knight, Se Jin Song, Gail Ackermann, Paul D. Cotter	36
20	Advancing Our Understanding of the Human Microbiome Using QIIME breakdown → 2013 ·Methods in enzymology on CD-ROM/Methods in enzymology ·José A. Navas-Molina, Juan Manuel Peralta‐Sánchez, Antonio González, Paul J. McMurdie, Yoshiki Vázquez‐Baeza, Zhenjiang Zech Xu, Luke K. Ursell, Christian L. Lauber, Hongwei Zhou, Se Jin Song, James S. Huntley, Gail Ackermann, Donna Berg-Lyons, Susan Holmes, J. Gregory Caporaso, Rob Knight	441

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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