Ryan Brenke

2.5k citations

13 papers · 1.9k indexed · 1 hit paper · h-index 11

Computational Theory and Mathematics top 1%
- Computational Drug Discovery Methods 4
Molecular Biology top 5%
- Protein Structure and Dynamics 7
- Protein purification and stability 4
- Glycosylation and Glycoproteins Research 2
- DNA and Nucleic Acid Chemistry 2
Radiology, Nuclear Medicine and Imaging top 5%
- Monoclonal and Polyclonal Antibodies Research 3
Immunology
Virology top 10%
Materials Chemistry
- Enzyme Structure and Function 4
Organic Chemistry
- Carbohydrate Chemistry and Synthesis 1

Co-authors: Dima Kozakov Sándor Vajda Stephen R. Comeau Dmitri Beglov Gwo‐Yu Chuang David R. Hall Melissa Landon Carla Mattos
Cited by: Computational Theory and Mathematics Molecular Biology Radiology, Nuclear Medicine and Imaging
Journals: Proteins Structure Function and Bioinformatics (6 papers)Bioinformatics (2 papers)Biophysical Journal (2 papers)
Partner nations: United States Canada Israel

In The Last Decade

Ryan Brenke

13 papers receiving 1.9k citations

Hit Papers

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Peers

Countries citing papers authored by Ryan Brenke

Since Specialization

Citations

This map shows the geographic impact of Ryan Brenke's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ryan Brenke with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ryan Brenke more than expected).

Fields of papers citing papers by Ryan Brenke

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ryan Brenke. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ryan Brenke. The network helps show where Ryan Brenke may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Ryan Brenke, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Ryan Brenke Line = papers co-authored together Ryan Brenke links everyone, so they are left out of the graph.

All Works

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13 of 13 papers shown

#	Work
1	Computational mapping reveals dramatic effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde Nucleic Acids Research ·Tanggis Bohnuud,Dmitri Beglov,直樹谷岡,Brandon S. Zerbe,David R. Hall,Ryan Brenke,Sándor Vajda,Maxim D. Frank‐Kamenetskii,Dima Kozakov	2012	33
2	Application of asymmetric statistical potentials to antibody–protein docking Bioinformatics ·Ryan Brenke,David R. Hall,Gwo‐Yu Chuang,Stephen R. Comeau,Tanggis Bohnuud,Dmitri Beglov,Ora Schueler‐Furman,Sándor Vajda,Dima Kozakov	2012	153
3	Minimal ensembles of side chain conformers for modeling protein–protein interactions Proteins Structure Function and Bioinformatics ·Dmitri Beglov,David R. Hall,Ryan Brenke,Maxim V. Shapovalov,Roland L. Dunbrack,Dima Kozakov,Sándor Vajda	2011	23
4	Structural conservation of druggable hot spots in protein–protein interfaces Proceedings of the National Academy of Sciences ·Dima Kozakov,David R. Hall,Gwo‐Yu Chuang,Regina Cencic,Ryan Brenke,Laurie E. Grove,Dmitri Beglov,Jerry Pelletier,Adrian Whitty,Sándor Vajda	2011	186
5	Achieving reliability and high accuracy in automated protein docking: Cluspro, PIPER, SDU, and stability analysis in CAPRI rounds 13–19 Proteins Structure Function and Bioinformatics ·Dima Kozakov,David R. Hall,Dmitri Beglov,Ryan Brenke,Stephen R. Comeau,Yang Shen,Keyong Li,Komivi DOSSA,Pirooz Vakili,Ioannis Ch. Paschalidis,Sándor Vajda	2010	201
6	Binding Hot Spots and Amantadine Orientation in the Influenza A Virus M2 Proton Channel Biophysical Journal ·Gwo‐Yu Chuang,Dima Kozakov,Ryan Brenke,Dmitri Beglov,Frank Guarnieri,Sándor Vajda	2009	35
7	Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidase Journal of Computer-Aided Molecular Design ·Melissa Landon,Raquel L. Lieberman,Quyen Q. Hoang,Shulin Ju,José M. M. Caaveiro,Susan D. Orwig,Dima Kozakov,Ryan Brenke,Gwo-Yu Chuang,Sırma Çapar,Sándor Vajda,Gregory A. Petsko,Dagmar Ringe	2009	71
8	Structural insights into recognition of β2‐glycoprotein I by the lipoprotein receptors Proteins Structure Function and Bioinformatics ·Dmitri Beglov,Changjin Lee,Alfredo De Biasio,Dima Kozakov,Ryan Brenke,Sándor Vajda,Natalia Beglova	2009	9
9	Fragment-based identification of druggable ‘hot spots’ of proteins using Fourier domain correlation techniques Bioinformatics ·Ryan Brenke,Dima Kozakov,Gwo‐Yu Chuang,Dmitri Beglov,David R. Hall,Melissa Landon,Carla Mattos,Sándor Vajda	2009	364
10	DARS (Decoys As the Reference State) Potentials for Protein-Protein Docking Biophysical Journal ·Gwo‐Yu Chuang,Dima Kozakov,Ryan Brenke,Stephen R. Comeau,Sándor Vajda	2008	129
11	ClusPro: Performance in CAPRI rounds 6–11 and the new server Proteins Structure Function and Bioinformatics ·Stephen R. Comeau,Dima Kozakov,Ryan Brenke,Yang Shen,Dmitri Beglov,Sándor Vajda	2007	69
12	Docking with PIPER and refinement with SDU in rounds 6–11 of CAPRI Proteins Structure Function and Bioinformatics ·Yang Shen,Ryan Brenke,Dima Kozakov,Stephen R. Comeau,Dmitri Beglov,Sándor Vajda	2007	10
13	PIPER: An FFT‐based protein docking program with pairwise potentialsbreakdown → Proteins Structure Function and Bioinformatics ·Dima Kozakov,Ryan Brenke,Stephen R. Comeau,Sándor Vajda	2006	630

About Ryan Brenke

Ryan Brenke is a scholar working on Computational Theory and Mathematics, Molecular Biology and Biophysics, having authored 13 papers that have together received 1.9k indexed citations. Recurring topics across this work include Protein Structure and Dynamics (7 papers), Computational Drug Discovery Methods (4 papers), Enzyme Structure and Function (4 papers), Protein purification and stability (4 papers), Monoclonal and Polyclonal Antibodies Research (3 papers), Glycosylation and Glycoproteins Research (2 papers), DNA and Nucleic Acid Chemistry (2 papers) and Carbohydrate Chemistry and Synthesis (1 paper). The work is most often cited by research in Computational Theory and Mathematics (536 citations), Molecular Biology (1.5k citations) and Radiology, Nuclear Medicine and Imaging (266 citations). Ryan Brenke has collaborated with scholars based in United States, Canada and Israel. Frequent co-authors include Dima Kozakov, Sándor Vajda, Stephen R. Comeau, Dmitri Beglov, Gwo‐Yu Chuang, David R. Hall, Melissa Landon, Carla Mattos, Yang Shen and Tanggis Bohnuud. Their work appears in journals such as Proteins Structure Function and Bioinformatics, Bioinformatics, Biophysical Journal, Nucleic Acids Research and Proceedings of the National Academy of Sciences.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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