Reuben Thomas

3.5k citations

49 papers · 1.2k indexed · h-index 22

Impact in

Health, Toxicology and Mutagenesis top 5%
- Air Quality and Health Impacts
Cancer Research top 10%
- Carcinogens and Genotoxicity Assessment

Papers in ⓘ

Cancer Research 12
- Carcinogens and Genotoxicity Assessment 8
Health, Toxicology and Mutagenesis 9
- Air Quality and Health Impacts 7

Co-authors: Luoping Zhang (12 shared papers)Christopher J. Portier (8 shared papers)Martyn T. Smith (11 shared papers)Katherine S. Pollard (5 shared papers)Cliona M. McHale (9 shared papers)Julia M. Gohlke (5 shared papers)Alisha K. Holloway (1 shared paper)Alan Hubbard (7 shared papers)
Journals: PLoS ONE (8 papers)Environmental Health Perspectives (4 papers)Environmental and Molecular Mutagenesis (4 papers)Cell Reports (3 papers)Development (3 papers)
Partner nations: United States China Netherlands

In The Last Decade

Reuben Thomas

49 papers receiving 1.2k citations

Peers

Countries citing papers authored by Reuben Thomas

Since Specialization

Citations

This map shows the geographic impact of Reuben Thomas's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Reuben Thomas with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Reuben Thomas more than expected).

Fields of papers citing papers by Reuben Thomas

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Reuben Thomas. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Reuben Thomas. The network helps show where Reuben Thomas may publish in the future.

Co-authors

The 25 scholars most cited alongside Reuben Thomas, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Reuben Thomas Line = papers co-authored together Reuben Thomas links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 49 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics during Cardiac Reprogramming Cell stem cell ·Nicole R. Stone, Casey A. Gifford, Reuben Thomas, Karishma Pratt, Kaitlen Samse-Knapp, Tamer Mohamed, Ethan Radzinsky, Amelia Schricker, Lin Ye, Pengzhi Yu, Joke G. van Bemmel, Kathryn N. Ivey, Katherine S. Pollard, Deepak Srivastava	2019	94
2	Global Gene Expression Profiling of a Population Exposed to a Range of Benzene Levels Environmental Health Perspectives ·Cliona M. McHale, Luoping Zhang, Qing Lan, Roel Vermeulen, Guilan Li, Alan Hubbard, Kristin E. Porter, Reuben Thomas, Christopher J. Portier, Minxue Shen, Stephen M. Rappaport, Songnian Yin, Martyn T. Smith, Nathaniel Rothman	2010	89
3	Features that define the best ChIP-seq peak calling algorithms Briefings in Bioinformatics ·Reuben Thomas, Sean Thomas, Alisha K. Holloway, Katherine S. Pollard	2016	74
4	Phosphorylation of tau at Y18, but not tau-fyn binding, is required for tau to modulate NMDA receptor-dependent excitotoxicity in primary neuronal culture Molecular Neurodegeneration ·Takashi Miyamoto, Liana R. Stein, Reuben Thomas, Biljana Djukic, Praveen Taneja, Joseph A. Knox, Keith Vossel, Lennart Mucke	2017	74
5	Neuronal APOE4 removal protects against tau-mediated gliosis, neurodegeneration and myelin deficits Nature Aging ·Nicole Koutsodendris, Jessica Blumenfeld, Ayushi Agrawal, Michela Traglia, Brian P. Grone, Misha Zilberter, Oscar Yip, Antara Rao, Maxine Nelson, Yanxia Hao, Reuben Thomas, Seo Yeon Yoon, Patrick Arriola, Yadong Huang	2023	64
6	Inhaled formaldehyde induces DNA–protein crosslinks and oxidative stress in bone marrow and other distant organs of exposed mice Environmental and Molecular Mutagenesis ·Xin Ye, Zhiying Ji, Chenxi Wei, Cliona M. McHale, Shumao Ding, Reuben Thomas, Xu Yang, Luoping Zhang	2013	57
7	Genetic and environmental pathways to complex diseases BMC Systems Biology ·Julia M. Gohlke, Reuben Thomas, Yonqing Zhang, Michael C. Rosenstein, Allan Peter Davis, Cynthia G. Murphy, Kevin G. Becker, Carolyn Mattingly, Christopher J. Portier	2009	56
8	Genome-Wide Functional Profiling Reveals Genes Required for Tolerance to Benzene Metabolites in Yeast PLoS ONE ·Matthew North, Vickram J. Tandon, Reuben Thomas, Alex Loguinov, Inna Gerlovina, Alan Hubbard, Luoping Zhang, Martyn T. Smith, Chris D. Vulpe	2011	51
9	A Chromatin Accessibility Atlas of the Developing Human Telencephalon Cell ·Eirene Markenscoff-Papadimitriou, Sean Whalen, Pawel F. Przytycki, Reuben Thomas, Fadya Binyameen, Tomasz J. Nowakowski, Arnold R. Kriegstein, Stephan Sanders, Matthew W. State, Katherine S. Pollard, John L.R. Rubenstein	2020	49
10	Estimating the Global Public Health Implications of Electricity andCoal Consumption Environmental Health Perspectives ·Julia M. Gohlke, Reuben Thomas, Alistair Woodward, Diarmid Campbell‐Lendrum, Annette Prüss‐Üstün, Simon Hales, Christopher J. Portier	2011	37
11	Choosing the right path: enhancement of biologically relevant sets of genes or proteins using pathway structure Genome biology ·Reuben Thomas, Julia M. Gohlke, Geffrey F. Stopper, Fred Parham, Christopher J. Portier	2009	36
12	Dynamic BAF chromatin remodeling complex subunit inclusion promotes temporally distinct gene expression programs in cardiogenesis Development ·Swetansu K. Hota, Jeffrey R. Johnson, Erik Verschueren, Reuben Thomas, Aaron M. Blotnick, Yiwen Zhu, Xin Sun, L Pennacchio, Nevan J. Krogan, Benoit G. Bruneau	2019	35
13	Characterization of Changes in Gene Expression and Biochemical Pathways at Low Levels of Benzene Exposure PLoS ONE ·Reuben Thomas, Alan Hubbard, Cliona M. McHale, Luoping Zhang, Stephen M. Rappaport, Qing Lan, Nathaniel Rothman, Roel Vermeulen, Kathryn Z. Guyton, Jennifer Jinot, Babasaheb Sonawane, Martyn T. Smith	2014	34
14	Estimating the Global Public Health Implications of Electricity and Coal Consumption Environmental Health Perspectives ·Julia M. Gohlke, Reuben Thomas, Alistair Woodward, Diarmid Campbell‐Lendrum, Annette Prüss‐Üstün, Simon Hales, Christopher J. Portier	2011	33
15	Deep immunophenotyping reveals endometriosis is marked by dysregulation of the mononuclear phagocytic system in endometrium and peripheral blood BMC Medicine ·Júlia Vallvé-Juanico, Ashley F. George, Sushmita Sen, Reuben Thomas, Min‐Gyoung Shin, Divyashree Kushnoor, Joshua Vasquez, Kim Chi Vo, Juan C. Irwin, Nadia R. Roan, Alexis J. Combes, Linda C. Giudice	2022	31
16	Analysis of the transcriptome in molecular epidemiology studies Environmental and Molecular Mutagenesis ·Cliona M. McHale, Luoping Zhang, Reuben Thomas, Martyn T. Smith	2013	29
17	Low-dose metabolism of benzene in humans: science and obfuscation Carcinogenesis ·Stephen M. Rappaport, Sungkyoon Kim, Reuben Thomas, Brent A. Johnson, Frédéric Y. Bois, Lawrence L. Kupper	2012	27
18	Post-GWAS Functional Characterization of Susceptibility Variants for Chronic Lymphocytic Leukemia PLoS ONE ·Fenna C.M. Sillé, Reuben Thomas, Martyn T. Smith, Lucía Conde, Christine F. Skibola	2012	27
19	A model-based optimization framework for the inference on gene regulatory networks from DNA array data Bioinformatics ·Reuben Thomas, Sanjay Mehrotra, Eleftherios T. Papoutsakis, Vassily Hatzimanikatis	2004	26
20	A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression data BMC Bioinformatics ·Reuben Thomas, Carlos J. Paredes, Sanjay Mehrotra, Vassily Hatzimanikatis, Eleftherios T. Papoutsakis	2007	23

About Reuben Thomas

Reuben Thomas is a scholar working on Cancer Research, Health, Toxicology and Mutagenesis, Neurology, Virology and Molecular Biology, having authored 49 papers that have together received 1.2k indexed citations. Recurring topics across this work include Gene expression and cancer classification (9 papers), Carcinogens and Genotoxicity Assessment (8 papers), Air Quality and Health Impacts (7 papers), Genomics and Chromatin Dynamics (6 papers), Bioinformatics and Genomic Networks (5 papers), Alzheimer's disease research and treatments (4 papers), Neuroinflammation and Neurodegeneration Mechanisms (4 papers) and Molecular Biology Techniques and Applications (4 papers). The work is most often cited by research in Health, Toxicology and Mutagenesis (212 citations), Cancer Research (199 citations), Molecular Biology (682 citations), Chemical Health and Safety (6 citations) and Neurology (73 citations). Reuben Thomas has collaborated with scholars based in United States, China and Netherlands. Frequent co-authors include Luoping Zhang, Christopher J. Portier, Martyn T. Smith, Katherine S. Pollard, Cliona M. McHale, Julia M. Gohlke, Alisha K. Holloway, Alan Hubbard, Sean Thomas and Stephen M. Rappaport. Their work appears in journals such as PLoS ONE, Environmental Health Perspectives, Environmental and Molecular Mutagenesis, Cell Reports and Development.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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