Patrick Aloy

15.5k citations

133 papers · 7.2k indexed · h-index 44

Impact in

Computational Theory and Mathematics top 0.2%
- Computational Drug Discovery Methods
Molecular Biology top 1%
- Protein Structure and Dynamics
- Bioinformatics and Genomic Networks
- RNA and protein synthesis mechanisms
- Machine Learning in Bioinformatics
- Microbial Metabolic Engineering and Bioproduction
- Genomics and Phylogenetic Studies

Papers in

Computational Theory and Mathematics 37
- Computational Drug Discovery Methods 37
Molecular Biology 111
- Bioinformatics and Genomic Networks 57
- Protein Structure and Dynamics 38
- Microbial Metabolic Engineering and Bioproduction 21
- RNA and protein synthesis mechanisms 17
- Fungal and yeast genetics research 9

Co-authors: Robert B. Russell Roberto Mosca Amelie Stein Arnaud Céol Miquel Duran‐Frigola Enrique Querol Hugo Ceulemans Juan Cedano
Journals: Nucleic Acids Research (8 papers)Journal of Molecular Biology (7 papers)Nature Communications (6 papers)Genome Medicine (6 papers)PLoS ONE (6 papers)
Partner nations: Spain Germany United States

In The Last Decade

Patrick Aloy

130 papers receiving 7.1k citations

Peers

Countries citing papers authored by Patrick Aloy

Since Specialization

Citations

This map shows the geographic impact of Patrick Aloy's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Patrick Aloy with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Patrick Aloy more than expected).

Fields of papers citing papers by Patrick Aloy

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Patrick Aloy. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Patrick Aloy. The network helps show where Patrick Aloy may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Patrick Aloy, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Patrick Aloy Line = papers co-authored together Patrick Aloy links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	APBIO: bioactive profiling of air pollutants through inferred bioactivity signatures and prediction of novel target interactions Journal of Cheminformatics ·冉懋韬, Ugo Perricone, Patrick Aloy, Rosalba Giugno	2025	1
2	Comprehensive detection and characterization of human druggable pockets through binding site descriptors Nature Communications ·Ma. de Pedro, Cheung Michael, Xavier Barril, Patrick Aloy	2024	5
3	Global analysis of suppressor mutations that rescue human genetic defects Genome Medicine ·浩一郎鶴田, Carles Pons, Ryan Engley, A. Naithani, Patrick Aloy, Jolanda van Leeuwen	2023	2
4	Molecular characterization of chronic liver disease dynamics: From liver fibrosis to acute-on-chronic liver failure JHEP Reports ·Isabel Graupera, S. Kawakami, Mar Coll, Elisa Pose, Alba Díaz, Júlia Vallverdú, Teresa Rubio‐Tomás, 山村雅紀, Patrícia Huelin, Marta Llopis, Cristina Solé, Elsa Solà, Constantino Fondevila, Juan José Lozano, Pau Sancho‐Bru, Pere Ginès, Patrick Aloy	2022	19
5	Analysing the yeast complexome—the Complex Portal rising to the challenge Nucleic Acids Research ·Birgit Meldal, Carles Pons, Livia Perfetto, Noemí del‐Toro, Edith D. Wong, Patrick Aloy, Henning Hermjakob, Sandra Orchard, Pablo Porras	2021	4
6	Association of Transcriptomic Signatures of Inflammatory Response with Viral Control after Dendritic Cell-Based Therapeutic Vaccination in HIV-1 Infected Individuals Vaccines ·Csaba Fehér, Harrison Hsiang, Lorna Leal, Montserrat Plana, Mireia Arnedo, Henk‐Jan van den Ham, Arno C. Andeweg, Rob A. Gruters, Francisco Díez‐Fuertes, José Alcamı́, Patrick Aloy, Felipe García	2021	2
7	Natural variants suppress mutations in hundreds of essential genes Molecular Systems Biology ·Leopold Parts, A. Naithani, Thanh Kha Ly, Mohsen Markazi, Lingyun Fang, Bryan-Joseph San Luis, Jia‐Xing Yue, Carles Pons, 何倩, Patrick Aloy, Gianni Liti, Jolanda van Leeuwen	2021	16
8	Systematic analysis of bypass suppression of essential genes Molecular Systems Biology ·Jolanda van Leeuwen, Carles Pons, Guihong Tan, B Romański, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Thanh Kha Ly, Matej Ušaj, Yue Zhang, Natascha van Lieshout, Chad L. Myers, Frederick P. Roth, Patrick Aloy, Brenda Andrews, Charles Boone	2020	37
9	Truncating variant burden in high-functioning autism and pleiotropic effects of LRP1 across psychiatric phenotypes Journal of Psychiatry and Neuroscience ·Bàrbara Torrico, Alex D. Shaw, Roberto Mosca, Marie-Hélène Lay, Amaia Hervás, Noèlia Fernàndez‐Castillo, Patrick Aloy, Mónica Bayés, Janice M. Fullerton, Bru Cormand, Claudio Toma	2019	21
10	Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline Nature Communications ·Marco L. Hennrich, Natalie Romanov, Patrick Horn, Samira Jaeger, Volker Eckstein, Violetta Steeples, Fei Ye, Amany R. Abdel Wahid, Laura Poisa-Beiro, Mang Ching Lai, Benjamin Lang, Jacqueline Boultwood, Thomas Luft, Judith B. Zaugg, Andrea Pellagatti, Peer Bork, Patrick Aloy, Anne‐Claude Gavin, Anthony D. Ho	2018	63
11	Quantification of Pathway Cross-talk Reveals Novel Synergistic Drug Combinations for Breast Cancer Cancer Research ·Samira Jaeger, Ana Igea, Kléber Loor Z., Víctor Alcalde, Begoña Cánovas, Modesto Orozco, Ángel R. Nebreda, Patrick Aloy	2016	64
12	NetAligner--a network alignment server to compare complexes, pathways and whole interactomes Nucleic Acids Research ·Roland A. Pache, Arnaud Céol, Patrick Aloy	2012	28
13	The Role of Structural Disorder in the Rewiring of Protein Interactions through Evolution Molecular & Cellular Proteomics ·Roberto Mosca, Roland A. Pache, Patrick Aloy	2012	48
14	Predicting protein–protein interaction specificity through the integration of three-dimensional structural information and the evolutionary record of protein domains Molecular BioSystems ·Alejandro Panjkovich, Patrick Aloy	2010	7
15	Novel Peptide-Mediated Interactions Derived from High-Resolution 3-Dimensional Structures PLoS Computational Biology ·Amelie Stein, Patrick Aloy	2010	51
16	3did: identification and classification of domain-based interactions of known three-dimensional structure Nucleic Acids Research ·Amelie Stein, Arnaud Céol, Patrick Aloy	2010	109
17	Incorporating high‐throughput proteomics experiments into structural biology pipelines: Identification of the low‐hanging fruits PROTEOMICS ·Roland A. Pache, Patrick Aloy	2008	11
18	Structural similarity to bridge sequence space: Finding new families on the bridges Protein Science ·Parantu K. Shah, Patrick Aloy, Peer Bork, Robert B. Russell	2005	10
19	Systematic searches for molecular synapomorphies in model metazoan genomes give some support for Ecdysozoa after accounting for the idiosyncrasies of Caenorhabditis elegans Evolution & Development ·Richard R. Copley, Patrick Aloy, Robert B. Russell, Maximilian J. Telford	2004	45
20	Relation between amino acid composition and cellular location of proteins 1 1Edited by F. E. Cohen Journal of Molecular Biology ·Juan Cedano, Patrick Aloy, Josep A. Pérez-Pons, Enrique Querol	1997	349

About Patrick Aloy

Patrick Aloy is a scholar working on Computational Theory and Mathematics, Molecular Biology, Aging, Pharmacology and Structural Biology, having authored 133 papers that have together received 7.2k indexed citations. Recurring topics across this work include Bioinformatics and Genomic Networks (57 papers), Protein Structure and Dynamics (38 papers), Computational Drug Discovery Methods (37 papers), Microbial Metabolic Engineering and Bioproduction (21 papers), RNA and protein synthesis mechanisms (17 papers), Enzyme Structure and Function (11 papers), Microbial Natural Products and Biosynthesis (9 papers) and Fungal and yeast genetics research (9 papers). The work is most often cited by research in Computational Theory and Mathematics (1.5k citations), Molecular Biology (5.9k citations), Structural Biology (40 citations), Cell Biology (397 citations) and Materials Chemistry (1.1k citations). Patrick Aloy has collaborated with scholars based in Spain, Germany and United States. Frequent co-authors include Robert B. Russell, Roberto Mosca, Amelie Stein, Arnaud Céol, Robert B. Russell, Miquel Duran‐Frigola, Enrique Querol, Hugo Ceulemans, Juan Cedano and Montserrat Soler‐López. Their work appears in journals such as Nucleic Acids Research, Journal of Molecular Biology, Nature Communications, Genome Medicine and PLoS ONE.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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