Leopold Parts

18.3k total citations · 5 hit papers
59 papers, 5.9k citations indexed

About

Leopold Parts is a scholar working on Molecular Biology, Genetics and Biophysics. According to data from OpenAlex, Leopold Parts has authored 59 papers receiving a total of 5.9k indexed citations (citations by other indexed papers that have themselves been cited), including 44 papers in Molecular Biology, 21 papers in Genetics and 10 papers in Biophysics. Recurrent topics in Leopold Parts's work include CRISPR and Genetic Engineering (14 papers), Genetic Mapping and Diversity in Plants and Animals (13 papers) and Cell Image Analysis Techniques (10 papers). Leopold Parts is often cited by papers focused on CRISPR and Genetic Engineering (14 papers), Genetic Mapping and Diversity in Plants and Animals (13 papers) and Cell Image Analysis Techniques (10 papers). Leopold Parts collaborates with scholars based in United Kingdom, Estonia and United States. Leopold Parts's co-authors include Oliver Stegle, Tanel Pärnamaa, Christof Angermueller, Richard Durbin, John Winn, Matias Piipari, Gianni Liti, Jonas Warringer, Omar Wagih and Ville Mustonen and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

Leopold Parts

58 papers receiving 5.8k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Deep learning for computational biology

2016 958 citations Tanel Pärnamaa, Leopold Parts et al. Molecular Systems Biology profile →
Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

2012 486 citations Leopold Parts, John Winn et al. profile →
Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

2009 468 citations Gemma C. Langridge, Minh‐Duy Phan et al. Genome Research profile →
Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes

2017 366 citations Gareth Girling, Leopold Parts et al. profile →
Predicting the mutations generated by repair of Cas9-induced double-strand breaks

2018 348 citations Felicity Allen, Luca Crepaldi et al. Nature Biotechnology profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Leopold Parts United Kingdom	32	4.0k	1.5k	590	485	476	59	5.9k
Christopher T. Workman Denmark	37	4.4k 1.1×	781 0.5×	614 1.0×	209 0.4×	376 0.8×	96	6.0k
Jeremy Goecks United States	14	4.5k 1.1×	891 0.6×	951 1.6×	210 0.4×	568 1.2×	34	7.7k
Satoru Kuhara Japan	46	5.4k 1.4×	905 0.6×	928 1.6×	530 1.1×	135 0.3×	203	8.1k
S. Cenk Şahinalp Canada	25	3.1k 0.8×	1.1k 0.7×	661 1.1×	134 0.3×	636 1.3×	58	4.6k
Daniel Blankenberg United States	21	5.5k 1.4×	1.2k 0.8×	1.2k 2.0×	232 0.5×	643 1.4×	50	8.7k
Jing Tang China	41	4.1k 1.0×	774 0.5×	344 0.6×	130 0.3×	382 0.8×	206	7.5k
Nicola Mulder South Africa	34	4.4k 1.1×	848 0.6×	1.2k 2.1×	174 0.4×	261 0.5×	159	6.8k
Richa Agarwala United States	34	4.0k 1.0×	1.5k 1.0×	1.3k 2.2×	335 0.7×	178 0.4×	77	7.1k
Tyra G. Wolfsberg United States	32	5.5k 1.4×	1.4k 1.0×	462 0.8×	110 0.2×	610 1.3×	68	7.9k
Jacques van Helden Belgium	39	5.1k 1.3×	790 0.5×	901 1.5×	188 0.4×	233 0.5×	92	6.4k

Countries citing papers authored by Leopold Parts

Since Specialization

Citations

This map shows the geographic impact of Leopold Parts's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Leopold Parts with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Leopold Parts more than expected).

Fields of papers citing papers by Leopold Parts

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Leopold Parts. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Leopold Parts. The network helps show where Leopold Parts may publish in the future.

Co-authorship network of co-authors of Leopold Parts

This figure shows the co-authorship network connecting the top 25 collaborators of Leopold Parts. A scholar is included among the top collaborators of Leopold Parts based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Leopold Parts. Leopold Parts is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Koeppel, Jonas, Raphaël Ferreira, Gareth Girling, et al.. (2025). Randomizing the human genome by engineering recombination between repeat elements. Science. 387(6733). eado3979–eado3979. 11 indexed citations

Zapata, Gerardo, et al.. (2025). PARPAL: PARalog Protein redistribution using Abundance and Localization in yeast database. G3 Genes Genomes Genetics. 15(9).

Koeppel, Jonas, et al.. (2024). Engineering structural variants to interrogate genome function. Nature Genetics. 56(12). 2623–2635. 4 indexed citations

Girling, Gareth, Luca Crepaldi, Ivan Kuzmin, et al.. (2024). The interplay of DNA repair context with target sequence predictably biases Cas9-generated mutations. Nature Communications. 15(1). 10271–10271. 3 indexed citations

Weller, Juliane, et al.. (2023). Predicting Mutations Generated by Cas9, Base Editing, and Prime Editing in Mammalian Cells. The CRISPR Journal. 6(4). 325–338. 1 indexed citations

Koeppel, Jonas, Juliane Weller, Ivan Kuzmin, et al.. (2023). Prediction of prime editing insertion efficiencies using sequence features and DNA repair determinants. Nature Biotechnology. 41(10). 1446–1456. 51 indexed citations

Rinken, Ago, et al.. (2022). ArtSeg—Artifact segmentation and removal in brightfield cell microscopy images without manual pixel-level annotations. Scientific Reports. 12(1). 11404–11404. 6 indexed citations

Koeppel, Jonas, Juliane Weller, Luca Crepaldi, et al.. (2022). Predicting base editing outcomes using position-specific sequence determinants. Nucleic Acids Research. 50(6). 3551–3564. 27 indexed citations

Fishman, Dmytro, Leopold Parts, Lukas Grätz, et al.. (2022). Live-cell microscopy or fluorescence anisotropy with budded baculoviruses—which way to go with measuring ligand binding to M ₄ muscarinic receptors?. Open Biology. 12(6). 220019–220019. 6 indexed citations

10.

Murphy, Robert, Martin Palm, Ville Mustonen, et al.. (2021). Genomic Epidemiology and Evolution of Escherichia coli in Wild Animals in Mexico. mSphere. 6(1). 19 indexed citations

11.

Parts, Leopold, Bryan-Joseph San Luis, Jia‐Xing Yue, et al.. (2021). Natural variants suppress mutations in hundreds of essential genes. Molecular Systems Biology. 17(5). e10138–e10138. 16 indexed citations

12.

Fishman, Dmytro, S Peel, Jan Wildenhain, et al.. (2021). Practical segmentation of nuclei in brightfield cell images with neural networks trained on fluorescently labelled samples. Journal of Microscopy. 284(1). 12–24. 10 indexed citations

13.

Palm, Martin, Ville Mustonen, Anne Farewell, et al.. (2021). Machine Learning Prediction of Resistance to Subinhibitory Antimicrobial Concentrations from Escherichia coli Genomes. mSystems. 6(4). e0034621–e0034621. 9 indexed citations

14.

Zyryanova, Alisa, Félix Weis, Alexandre Faille, et al.. (2018). Binding of ISRIB reveals a regulatory site in the nucleotide exchange factor eIF2B. Science. 359(6383). 1533–1536. 135 indexed citations

15.

Moradigaravand, Danesh, Martin Palm, Anne Farewell, et al.. (2018). Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data. PLoS Computational Biology. 14(12). e1006258–e1006258. 137 indexed citations

16.

Pärnamaa, Tanel & Leopold Parts. (2017). Accurate Classification of Protein Subcellular Localization from High-Throughput Microscopy Images Using Deep Learning. G3 Genes Genomes Genetics. 7(5). 1385–1392. 108 indexed citations

17.

Brown, Andrew, Zhihao Ding, Ana Viñuela, et al.. (2015). Pathway-Based Factor Analysis of Gene Expression Data Produces Highly Heritable Phenotypes That Associate with Age. G3 Genes Genomes Genetics. 5(5). 839–847. 7 indexed citations

18.

Illingworth, Christopher J. R., Leopold Parts, Anders Bergström, Gianni Liti, & Ville Mustonen. (2013). Inferring Genome-Wide Recombination Landscapes from Advanced Intercross Lines: Application to Yeast Crosses. PLoS ONE. 8(5). e62266–e62266. 20 indexed citations

19.

Wagih, Omar, Matej Ušaj, Anastasia Baryshnikova, et al.. (2013). SGAtools: one-stop analysis and visualization of array-based genetic interaction screens. Nucleic Acids Research. 41(W1). W591–W596. 110 indexed citations

20.

Langridge, Gemma C., Minh‐Duy Phan, Daniel J. Turner, et al.. (2009). Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. Genome Research. 19(12). 2308–2316. 468 indexed citations breakdown →

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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