Niko Välimäki

4.6k total citations
33 papers, 921 citations indexed

About

Niko Välimäki is a scholar working on Molecular Biology, Artificial Intelligence and Hardware and Architecture. According to data from OpenAlex, Niko Välimäki has authored 33 papers receiving a total of 921 indexed citations (citations by other indexed papers that have themselves been cited), including 19 papers in Molecular Biology, 14 papers in Artificial Intelligence and 5 papers in Hardware and Architecture. Recurrent topics in Niko Välimäki's work include Genomics and Phylogenetic Studies (12 papers), Algorithms and Data Compression (12 papers) and Uterine Myomas and Treatments (4 papers). Niko Välimäki is often cited by papers focused on Genomics and Phylogenetic Studies (12 papers), Algorithms and Data Compression (12 papers) and Uterine Myomas and Treatments (4 papers). Niko Välimäki collaborates with scholars based in Finland, Chile and Sweden. Niko Välimäki's co-authors include Veli Mäkinen, Jouni Sirén, Lauri A. Aaltonen, Gonzalo Navarro, Esa Pitkänen, Eevi Kaasinen, Kimmo Palin, Jukka Corander, Antti Honkela and Auli Karhu and has published in prestigious journals such as Nature Communications, Nature Genetics and Bioinformatics.

In The Last Decade

Niko Välimäki

32 papers receiving 906 citations

Peers

Countries citing papers authored by Niko Välimäki

Since Specialization

Citations

This map shows the geographic impact of Niko Välimäki's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Niko Välimäki with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Niko Välimäki more than expected).

Fields of papers citing papers by Niko Välimäki

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Niko Välimäki. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Niko Välimäki. The network helps show where Niko Välimäki may publish in the future.

Co-authorship network of co-authors of Niko Välimäki

This figure shows the co-authorship network connecting the top 25 collaborators of Niko Välimäki. A scholar is included among the top collaborators of Niko Välimäki based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Niko Välimäki. Niko Välimäki is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Comprehensive metabolomic and epigenomic characterization of microsatellite stable BRAF-mutated colorectal cancer 2025 ·Oncogene ·Aurora Taira, Mervi Aavikko, Riku Katainen, Eevi Kaasinen, Niko Välimäki, Janne Ravantti, Ari Ristimäki, Toni T. Seppälä, Laura Renkonen‐Sinisalo, Anna Lepistö, (unknown), Anne Mattila, Selja Koskensalo, Jukka‐Pekka Mecklin, Jan Böhm, Jesper B. Bramsen, Claus L. Andersen, Kimmo Palin, Kristiina Rajamäki, Lauri A. Aaltonen, (unknown)	2
2	Activation of FGFR genes by genetic and epigenetic alterations in uterine leiomyomas 2025 ·PubMed ·(unknown), Aurora Taira, Åsa Kolterud, (unknown), Kimmo Palin, Riku Katainen, (unknown), Eevi Kaasinen, (unknown), Anniina Raitila, Helena Kopp Kallner, (unknown), Ralf Bützow, Oskari Heikinheimo, Annukka Pasanen, Auli Karhu, Niko Välimäki, Lauri A. Aaltonen	0
3	Non-stem cell lineages as an alternative origin of intestinal tumorigenesis in the context of inflammation 2024 ·Nature Genetics ·(unknown), Rosalie Joosten, Mark R. Schmitt, Niko Välimäki, Andrea Sacchetti, Kristiina Rajamäki, Jiahn Choi, (unknown), (unknown), (unknown), Thierry van den Bosch, Daniëlle Seinstra, Annemarie C. de Vries, Michail Doukas, Leonard H. Augenlicht, Lauri A. Aaltonen, Riccardo Fodde	17
4	GNAS mutation inhibits growth and induces phosphodiesterase 4D expression in colorectal cancer cell lines 2024 ·International Journal of Cancer ·Pirjo Nummela, Sadia Zafar, (unknown), (unknown), (unknown), (unknown), Muhammad Yasir Asghar, Niko Välimäki, Kid Törnquist, Auli Karhu, Pirjo Laakkonen, Lauri A. Aaltonen, Ari Ristimäki	9
5	Previously reported CCDC26 risk variant and novel germline variants in GALNT13, AR, and MYO10 associated with familial glioma in Finland 2024 ·Scientific Reports ·(unknown), Ebrahim Afyounian, (unknown), Riku Katainen, (unknown), Anssi Nurminen, Mauro Scaravilli, (unknown), Vidal Fey, (unknown), Pauli Helén, Niko Välimäki, Juha Kesseli, Lauri A. Aaltonen, Hannu Haapasalo, Matti Nykter, Kirsi J. Rautajoki	1
6	Lynch syndrome-associated and sporadic microsatellite unstable colorectal cancers: different patterns of clonal evolution yield highly similar tumours 2024 ·Human Molecular Genetics ·(unknown), Riku Katainen, Aurora Taira, Niko Välimäki, Ari Ristimäki, Toni T. Seppälä, Laura Renkonen‐Sinisalo, Anna Lepistö, (unknown), Anne Mattila, Selja Koskensalo, Jukka‐Pekka Mecklin, Kristiina Rajamäki, Kimmo Palin, Lauri A. Aaltonen	3
7	Vitamin C boosts DNA demethylation in TET2 germline mutation carriers 2023 ·Clinical Epigenetics ·Aurora Taira, Kimmo Palin, Anna Kuosmanen, Niko Välimäki, Outi Kuittinen, Outi Kuismin, Eevi Kaasinen, Kristiina Rajamäki, Lauri A. Aaltonen	16
8	Inherited mutations affecting the SRCAP complex are central in moderate-penetrance predisposition to uterine leiomyomas 2023 ·The American Journal of Human Genetics ·Niko Välimäki, (unknown), Tatiana Cajuso, (unknown), Aurora Taira, (unknown), (unknown), (unknown), Annukka Pasanen, Kimmo Palin, Oskari Heikinheimo, Ralf Bützow, Lauri A. Aaltonen, Auli Karhu	9
9	Genetic and Epigenetic Characterization of Growth Hormone–Secreting Pituitary Tumors 2019 ·Molecular Cancer Research ·Niko Välimäki, Camilla Schalin‐Jäntti, Atte Karppinen, Anders Paetau, Leena Kivipelto, Lauri A. Aaltonen, Auli Karhu	18
10	The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease 2018 ·Clinical Infectious Diseases ·Amelieke J. H. Cremers, Fredrick M. Mobegi, Christa E. van der Gaast‐de Jongh, (unknown), (unknown), Minna Vehkala, Mirjam J. Knol, Hester J. Bootsma, Niko Välimäki, Nicholas J. Croucher, Jacques F. Meis, Stephen D. Bentley, Sacha A. F. T. van Hijum, Jukka Corander, Aldert Zomer, Gerben Ferwerda, Marien I. de Jonge	18
11	Towards pan-genome read alignment to improve variation calling 2018 ·BMC Genomics ·Daniel Valenzuela, (unknown), Niko Välimäki, Esa Pitkänen, Veli Mäkinen	20
12	Exome-wide somatic mutation characterization of small bowel adenocarcinoma 2018 ·PLoS Genetics ·Ulrika A. Hänninen, Riku Katainen, Tomas Tanskanen, (unknown), (unknown), (unknown), Ari Ristimäki, Eero Pukkala, Minna Taipale, Jukka‐Pekka Mecklin, (unknown), Esa Pitkänen, Kimmo Palin, Niko Välimäki, Netta Mäkinen, Lauri A. Aaltonen	54
13	Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion 2016 ·Microbial Genomics ·Ann‐Katrin Llarena, Ji Zhang, Minna Vehkala, Niko Välimäki, Marjaana Hakkinen, (unknown), Mati Roasto, Mihkel Mäesaar, Eduardo N. Taboada, (unknown), Giuliano Garofolo, Cesare Cammà, Elisabetta Di Giannatale, Jukka Corander, Mirko Rossi	24
14	Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes 2016 ·Nature Communications ·John A. Lees, Minna Vehkala, Niko Välimäki, Simon R. Harris, Claire Chewapreecha, Nicholas J. Croucher, Pekka Marttinen, Mark R. Davies, Andrew C. Steer, Steven Y. C. Tong, Antti Honkela, Julian Parkhill, Stephen D. Bentley, Jukka Corander	121
15	Whole-Genome Sequencing of Growth Hormone (GH)-Secreting Pituitary Adenomas 2015 ·The Journal of Clinical Endocrinology & Metabolism ·Niko Välimäki, Hande Demi̇r, Esa Pitkänen, Eevi Kaasinen, Atte Karppinen, Leena Kivipelto, Camilla Schalin‐Jäntti, Lauri A. Aaltonen, Auli Karhu	69
16	Indexing Graphs for Path Queries with Applications in Genome Research 2014 ·IEEE/ACM Transactions on Computational Biology and Bioinformatics ·Jouni Sirén, Niko Välimäki, Veli Mäkinen	205
17	Multi-pattern matching with bidirectional indexes ☆ ☆Preliminary version of this article appeared in COCOON 2012 [12]. 2013 ·Journal of Discrete Algorithms ·Simon Gog, (unknown), Juha Kärkkäinen, Veli Mäkinen, Niko Välimäki	1
18	Approximate all-pairs suffix/prefix overlaps 2012 ·Information and Computation ·Niko Välimäki, Susana Ladra, Veli Mäkinen	6
19	EFFICIENT PATH KERNELS FOR REACTION FUNCTION PREDICTION 2012 ·Markus Heinonen, Niko Välimäki, Veli Mäkinen, Juho Rousu	6
20	Run-Length Compressed Indexes for Repetitive Sequence Collections 2008 ·Työväentutkimus Vuosikirja ·Veli Mäkinen, Gonzalo Navarro, Jouni Sirén, Niko Välimäki	1

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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