Jouni Sirén

4.9k total citations
19 papers, 892 citations indexed

About

Jouni Sirén is a scholar working on Molecular Biology, Artificial Intelligence and Hardware and Architecture. According to data from OpenAlex, Jouni Sirén has authored 19 papers receiving a total of 892 indexed citations (citations by other indexed papers that have themselves been cited), including 13 papers in Molecular Biology, 13 papers in Artificial Intelligence and 4 papers in Hardware and Architecture. Recurrent topics in Jouni Sirén's work include Algorithms and Data Compression (13 papers), Genomics and Phylogenetic Studies (12 papers) and Network Packet Processing and Optimization (3 papers). Jouni Sirén is often cited by papers focused on Algorithms and Data Compression (13 papers), Genomics and Phylogenetic Studies (12 papers) and Network Packet Processing and Optimization (3 papers). Jouni Sirén collaborates with scholars based in United States, Chile and Finland. Jouni Sirén's co-authors include Niko Välimäki, Veli Mäkinen, Benedict Paten, Jordan M. Eizenga, Adam M. Novak, Erik Garrison, Jonas A. Sibbesen, Glenn Hickey, Jean Monlong and Gonzalo Navarro and has published in prestigious journals such as Science, Bioinformatics and Nature Methods.

In The Last Decade

Jouni Sirén

19 papers receiving 882 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Jouni Sirén United States	10	587	286	267	204	40	19	892
Niko Välimäki Finland	17	472 0.8×	163 0.6×	117 0.4×	176 0.9×	59 1.5×	33	921
Leena Salmela Finland	12	751 1.3×	280 1.0×	136 0.5×	200 1.0×	85 2.1×	35	1.1k
Guillaume Rizk France	10	572 1.0×	177 0.6×	116 0.4×	246 1.2×	38 0.9×	12	804
Patrick Flick United States	7	488 0.8×	226 0.8×	108 0.4×	53 0.3×	38 0.9×	13	848
Gianluca Della Vedova Italy	15	526 0.9×	102 0.4×	192 0.7×	214 1.0×	78 1.9×	68	801
Nadia Pisanti Italy	11	363 0.6×	91 0.3×	160 0.6×	191 0.9×	22 0.6×	47	519
Santiago Marco‐Sola Spain	12	578 1.0×	166 0.6×	139 0.5×	216 1.1×	61 1.5×	28	731
German Tischler United Kingdom	11	271 0.5×	84 0.3×	96 0.4×	79 0.4×	48 1.2×	21	486
Paola Bonizzoni Italy	19	751 1.3×	84 0.3×	245 0.9×	243 1.2×	96 2.4×	96	954
Neil Jones United Kingdom	14	366 0.6×	387 1.4×	149 0.6×	126 0.6×	7 0.2×	21	789

Countries citing papers authored by Jouni Sirén

Since Specialization

Citations

This map shows the geographic impact of Jouni Sirén's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jouni Sirén with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jouni Sirén more than expected).

Fields of papers citing papers by Jouni Sirén

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jouni Sirén. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jouni Sirén. The network helps show where Jouni Sirén may publish in the future.

Co-authorship network of co-authors of Jouni Sirén

This figure shows the co-authorship network connecting the top 25 collaborators of Jouni Sirén. A scholar is included among the top collaborators of Jouni Sirén based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jouni Sirén. Jouni Sirén is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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19 of 19 papers shown

Sirén, Jouni, Glenn Hickey, Jordan M. Eizenga, et al.. (2024). Personalized pangenome references. Nature Methods. 21(11). 2017–2023. 9 indexed citations

Sibbesen, Jonas A., Jordan M. Eizenga, Adam M. Novak, et al.. (2023). Haplotype-aware pantranscriptome analyses using spliced pangenome graphs. Nature Methods. 20(2). 239–247. 31 indexed citations

Sirén, Jouni & Benedict Paten. (2022). GBZ file format for pangenome graphs. Bioinformatics. 38(22). 5012–5018. 8 indexed citations

Baaijens, Jasmijn A., Paola Bonizzoni, Christina Boucher, et al.. (2022). Computational graph pangenomics: a tutorial on data structures and their applications. Natural Computing. 21(1). 81–108. 21 indexed citations

Sirén, Jouni, Jean Monlong, Xian Chang, et al.. (2021). Pangenomics enables genotyping of known structural variants in 5202 diverse genomes. Science. 374(6574). abg8871–abg8871. 165 indexed citations

Oliva, Marco Antônio, Massimiliano Rossi, Jouni Sirén, et al.. (2021). Efficiently Merging r-indexes. CINECA IRIS Institutial research information system (University of Pisa). 203–212. 1 indexed citations

Chang, Xian, Jordan M. Eizenga, Adam M. Novak, Jouni Sirén, & Benedict Paten. (2020). Distance indexing and seed clustering in sequence graphs. Bioinformatics. 36(Supplement_1). i146–i153. 9 indexed citations

Hickey, Glenn, David N. Heller, Jean Monlong, et al.. (2020). Genotyping structural variants in pangenome graphs using the vg toolkit. Genome biology. 21(1). 35–35. 156 indexed citations

Eizenga, Jordan M., Adam M. Novak, Jonas A. Sibbesen, et al.. (2020). Pangenome Graphs. Annual Review of Genomics and Human Genetics. 21(1). 139–162. 135 indexed citations

10.

Gagie, Travis, Giovanni Manzini, & Jouni Sirén. (2017). Wheeler graphs: A framework for BWT-based data structures. Theoretical Computer Science. 698. 67–78. 36 indexed citations

11.

Gagie, Travis, et al.. (2017). Relative Suffix Trees. The Computer Journal. 61(5). 773–788. 5 indexed citations

12.

Gagie, Travis, et al.. (2015). Document Counting in Compressed Space. 103–112. 2 indexed citations

13.

Sirén, Jouni, Niko Välimäki, & Veli Mäkinen. (2014). Indexing Graphs for Path Queries with Applications in Genome Research. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 11(2). 375–388. 205 indexed citations

14.

Ferragina, Paolo, Jouni Sirén, & Rossano Venturini. (2013). Distribution-Aware Compressed Full-Text Indexes. Algorithmica. 67(4). 529–546. 3 indexed citations

15.

Arroyuelo, Diego, Francisco Claude, Sebastian Maneth, et al.. (2013). Fast in‐memory XPath search using compressed indexes. Software Practice and Experience. 45(3). 399–434. 6 indexed citations

16.

Sirén, Jouni. (2012). Compressed Full-Text Indexes for Highly Repetitive Collections. Työväentutkimus Vuosikirja. 8 indexed citations

17.

Mäkinen, Veli, Gonzalo Navarro, Jouni Sirén, & Niko Välimäki. (2010). Storage and Retrieval of Highly Repetitive Sequence Collections. Journal of Computational Biology. 17(3). 281–308. 80 indexed citations

18.

Arroyuelo, Diego, Francisco Claude, Sebastian Maneth, et al.. (2010). Fast in-memory XPath search using compressed indexes. Työväentutkimus Vuosikirja. 31. 417–428. 11 indexed citations

19.

Mäkinen, Veli, Gonzalo Navarro, Jouni Sirén, & Niko Välimäki. (2008). Run-Length Compressed Indexes for Repetitive Sequence Collections. Työväentutkimus Vuosikirja. 1 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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