Michael R. Shortreed

5.4k total citations · 1 hit paper
91 papers, 4.0k citations indexed

About

Michael R. Shortreed is a scholar working on Molecular Biology, Spectroscopy and Electrical and Electronic Engineering. According to data from OpenAlex, Michael R. Shortreed has authored 91 papers receiving a total of 4.0k indexed citations (citations by other indexed papers that have themselves been cited), including 69 papers in Molecular Biology, 46 papers in Spectroscopy and 13 papers in Electrical and Electronic Engineering. Recurrent topics in Michael R. Shortreed's work include Advanced Proteomics Techniques and Applications (42 papers), Mass Spectrometry Techniques and Applications (31 papers) and Metabolomics and Mass Spectrometry Studies (17 papers). Michael R. Shortreed is often cited by papers focused on Advanced Proteomics Techniques and Applications (42 papers), Mass Spectrometry Techniques and Applications (31 papers) and Metabolomics and Mass Spectrometry Studies (17 papers). Michael R. Shortreed collaborates with scholars based in United States, China and Switzerland. Michael R. Shortreed's co-authors include Lloyd M. Smith, Raoul Kopelman, Brian L. Frey, Michael Kuhn, Stefan K. Solntsev, Gloria Sheynkman, Mark Scalf, Edward S. Yeung, Zhong-You Shi and Zhifu Xu and has published in prestigious journals such as Journal of the American Chemical Society, Physical Review Letters and Molecular Cell.

In The Last Decade

Michael R. Shortreed

88 papers receiving 4.0k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Fluorescent Fiber-Optic Calcium Sensor for Physiological Measurements

1996 595 citations Michael R. Shortreed et al. Analytical Chemistry profile →

Peers

Countries citing papers authored by Michael R. Shortreed

Since Specialization

Citations

This map shows the geographic impact of Michael R. Shortreed's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Michael R. Shortreed with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Michael R. Shortreed more than expected).

Fields of papers citing papers by Michael R. Shortreed

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Michael R. Shortreed. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Michael R. Shortreed. The network helps show where Michael R. Shortreed may publish in the future.

Co-authorship network of co-authors of Michael R. Shortreed

This figure shows the co-authorship network connecting the top 25 collaborators of Michael R. Shortreed. A scholar is included among the top collaborators of Michael R. Shortreed based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Michael R. Shortreed. Michael R. Shortreed is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Open-Source and FAIR Research Software for Proteomics 2025 ·Journal of Proteome Research ·Yasset Pérez‐Riverol, Wout Bittremieux, William Stafford Noble, Lennart Martens, Aivett Bilbao Pena, Michael R. Lazear, Björn Grüning, Daniel S. Katz, Michael J. MacCoss, (unknown), Jimmy K. Eng, Robbin Bouwmeester, Michael R. Shortreed, Enrique Audain, Timo Sachsenberg, (unknown), Georg Wallmann, Bo Wen, Lukas Käll, William E. Fondrie	6
2	IsoBayes: a Bayesian approach for single-isoform proteomics inference 2025 ·Bioinformatics ·(unknown), Michael R. Shortreed, Erin D. Jeffery, Ben T. Jordan, Rachel Miller, Andrea Cavalli, Lloyd M. Smith, Colin N. Dewey, Gloria Sheynkman, Simone Tiberi	0
3	Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet 2021 ·iScience ·Belinda Yau, (unknown), Alexis Díaz‐Vegas, (unknown), (unknown), Elise J. Needham, (unknown), (unknown), Kyle L. Hoehn, Amanda E. Brandon, Laurence Macia, Gregory J. Cooney, Michael R. Shortreed, Lloyd M. Smith, Mark P. Keller, Peter Thorn, Mark Larance, David E. James, Sean J. Humphrey, Melkam A. Kebede	11
4	Enhanced Protein Isoform Characterization Through Long-Read Proteogenomics - Jurkat Samples and Reference Data 2021 ·Zenodo (CERN European Organization for Nuclear Research) ·Rachel Miller, Ben T. Jordan, (unknown), Erin D. Jeffery, (unknown), (unknown), Robert J. Millikin, Michael R. Shortreed, Simone Tiberi, Ana Conesa, Lloyd M. Smith, Anne Deslattes Mays, Gloria Sheynkman	1
5	Spritz: A Proteogenomic Database Engine 2020 ·Journal of Proteome Research ·Anthony J. Cesnik, Rachel Miller, (unknown), Lei Lü, Robert J. Millikin, Michael R. Shortreed, Brian L. Frey, Lloyd M. Smith	22
6	Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform 2020 ·Proteomes ·Subina Mehta, (unknown), (unknown), Robert J. Millikin, (unknown), Ignacio Eguinoa, Lennart Martens, Michael R. Shortreed, Lloyd M. Smith, Thomas McGowan, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik Jagtap	10
7	Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database 2019 ·Journal of Proteome Research ·(unknown), (unknown), Leah V. Schaffer, Rachel Miller, Robert J. Millikin, Mark Scalf, Brian L. Frey, Michael R. Shortreed, Lloyd M. Smith	21
8	Identification and Quantification of Proteoforms by Mass Spectrometry 2019 ·PMC ·Leah V. Schaffer, Robert J. Millikin, Rachel Miller, Lissa C. Anderson, Ryan T. Fellers, Ying Ge, Neil L. Kelleher, Richard D. LeDuc, Xiaowen Liu, Samuel Payne, Liangliang Sun, Paul M. Thomas, Trisha Tucholski, Zhe Wang, Si Wu, Zhijie Wu, (unknown), Michael R. Shortreed, Lloyd M. Smith	0
9	Comprehensive in vivo identification of the c-Myc mRNA protein interactome using HyPR-MS 2019 ·RNA ·(unknown), (unknown), Anthony J. Cesnik, Rachel Miller, Mark Scalf, Michael R. Shortreed, Lloyd M. Smith	17
10	ProForma: A Standard Proteoform Notation 2018 ·Journal of Proteome Research ·Richard D. LeDuc, Veit Schwämmle, Michael R. Shortreed, Anthony J. Cesnik, Stefan K. Solntsev, Jared Shaw, María Martin, Juan Antonio Vizcaíno, Emanuele Alpi, Paul O. Danis, Neil L. Kelleher, Lloyd M. Smith, Ying Ge, Jeffrey N. Agar, Julia Chamot‐Rooke, Joseph A. Loo, Ljiljana Paša‐Tolić, Yury O. Tsybin	28
11	Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance 2018 ·Stem Cell Reports ·(unknown), (unknown), (unknown), Leah V. Schaffer, Mark Scalf, Michael R. Shortreed, Gopal Iyer, Lloyd M. Smith, Rupa Sridharan	18
12	Multiplexed Sequence-Specific Capture of Chromatin and Mass Spectrometric Discovery of Associated Proteins 2017 ·Analytical Chemistry ·(unknown), Julia Kennedy‐Darling, Michael R. Shortreed, Mark Scalf, Audrey P. Gasch, Lloyd M. Smith	8
13	Elucidating Escherichia coli Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database 2017 ·Journal of Proteome Research ·(unknown), Michael R. Shortreed, Mark Scalf, Brian L. Frey, Anthony J. Cesnik, Stefan K. Solntsev, Leah V. Schaffer, Lloyd M. Smith	27
14	Multiplexed Programmable Release of Captured DNA 2014 ·ChemBioChem ·Julia Kennedy‐Darling, (unknown), Michael R. Shortreed, Lloyd M. Smith	8
15	Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq 2013 ·Molecular & Cellular Proteomics ·Gloria Sheynkman, Michael R. Shortreed, Brian L. Frey, Lloyd M. Smith	100
16	Sirt3 Promotes the Urea Cycle and Fatty Acid Oxidation during Dietary Restriction 2011 ·Molecular Cell ·William C. Hallows, Wei Yu, Brian C. Smith, (unknown), James J. Ellinger, Shinichi Someya, Michael R. Shortreed, Tomas A. Prolla, John L. Markley, Lloyd M. Smith, Shimin Zhao, Kun‐Liang Guan, John M. Denu	320
17	Sirt3 Promotes the Urea Cycle and Fatty Acid Oxidation during Dietary Restriction 2011 ·Molecular Cell ·William C. Hallows, Wei Yu, Brian C. Smith, Mark Devries, James J. Ellinger, Shinichi Someya, Michael R. Shortreed, Tomas A. Prolla, John L. Markley, Lloyd M. Smith, Shimin Zhao, Kun‐Liang Guan, John M. Denu	21
18	Revealing the Role of Phosphatidylserine in Shear Stress–Mediated Protection in Endothelial Cells 2008 ·Endothelium ·Julie K. Freed, Michael R. Shortreed, (unknown), Lloyd M. Smith, Andrew S. Greene	3
19	A surface invasive cleavage assay for highly parallel SNP analysis 2002 ·Human Mutation ·(unknown), Michael R. Shortreed, Jeff G. Hall, Liman Wang, (unknown), Priscilla Wilkins Stevens, David M. Kelso, Victor I. Lyamichev, Bruce Neri, Lloyd M. Smith	10
20	Single-molecule immunoassay and DNA diagnosis 2001 ·Electrophoresis ·Yinfa Ma, Michael R. Shortreed, Hanlin Li, Weihua Huang, Edward S. Yeung	23

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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