Colin N. Dewey

57.0k total citations · 3 hit papers
53 papers, 19.2k citations indexed

About

Colin N. Dewey is a scholar working on Molecular Biology, Genetics and Plant Science. According to data from OpenAlex, Colin N. Dewey has authored 53 papers receiving a total of 19.2k indexed citations (citations by other indexed papers that have themselves been cited), including 44 papers in Molecular Biology, 14 papers in Genetics and 9 papers in Plant Science. Recurrent topics in Colin N. Dewey's work include Genomics and Phylogenetic Studies (25 papers), RNA and protein synthesis mechanisms (11 papers) and RNA modifications and cancer (9 papers). Colin N. Dewey is often cited by papers focused on Genomics and Phylogenetic Studies (25 papers), RNA and protein synthesis mechanisms (11 papers) and RNA modifications and cancer (9 papers). Colin N. Dewey collaborates with scholars based in United States, Taiwan and South Korea. Colin N. Dewey's co-authors include Bo Li, James A. Thomson, Ron Stewart, Lior Pachter, Victor Ruotti, Bret Larget, Cécile Ané, David J Begun, Kristian Stevens and Andrew D. Kern and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and The Journal of Experimental Medicine.

In The Last Decade

Colin N. Dewey

50 papers receiving 19.0k citations

Hit Papers

align trajectories sort by overperformance

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

2011 14.8k citations Bo Li, Colin N. Dewey BMC Bioinformatics profile →
RNA-Seq gene expression estimation with read mapping uncertainty

2009 790 citations Bo Li, Ron Stewart et al. Bioinformatics profile →
Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans

2007 514 citations David J Begun, Alisha K. Holloway et al. PLoS Biology profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Colin N. Dewey United States	27	11.0k	4.3k	3.0k	2.3k	2.2k	53	19.2k
Joaquı́n Dopazo Spain	69	11.8k 1.1×	3.8k 0.9×	3.3k 1.1×	1.7k 0.7×	1.4k 0.7×	356	21.1k
Mihaela Pertea United States	24	12.0k 1.1×	6.6k 1.6×	3.0k 1.0×	2.5k 1.1×	1.6k 0.8×	44	19.8k
Alicia Oshlack Australia	45	11.8k 1.1×	3.2k 0.7×	2.8k 1.0×	2.8k 1.2×	1.9k 0.9×	98	18.8k
Brian A. Williams United States	24	16.7k 1.5×	6.2k 1.4×	3.2k 1.1×	4.1k 1.8×	2.0k 0.9×	34	25.4k
Ana Conesa Spain	51	10.3k 0.9×	5.0k 1.2×	2.3k 0.8×	1.6k 0.7×	1.2k 0.6×	165	17.5k
Harold Pimentel United States	11	16.4k 1.5×	6.4k 1.5×	3.3k 1.1×	4.1k 1.8×	2.8k 1.3×	21	26.3k
Filip Pattyn Belgium	25	10.3k 0.9×	2.4k 0.6×	2.3k 0.8×	2.4k 1.0×	1.9k 0.9×	42	18.5k
Hidemasa Bono Japan	30	19.5k 1.8×	3.4k 0.8×	3.0k 1.0×	3.7k 1.6×	2.4k 1.1×	108	28.8k
Sofia K. Forslund Germany	38	16.9k 1.5×	4.0k 0.9×	2.7k 0.9×	1.7k 0.7×	1.5k 0.7×	99	25.6k

Countries citing papers authored by Colin N. Dewey

Since Specialization

Citations

This map shows the geographic impact of Colin N. Dewey's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Colin N. Dewey with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Colin N. Dewey more than expected).

Fields of papers citing papers by Colin N. Dewey

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Colin N. Dewey. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Colin N. Dewey. The network helps show where Colin N. Dewey may publish in the future.

Co-authorship network of co-authors of Colin N. Dewey

This figure shows the co-authorship network connecting the top 25 collaborators of Colin N. Dewey. A scholar is included among the top collaborators of Colin N. Dewey based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Colin N. Dewey. Colin N. Dewey is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Shortreed, Michael R., Erin D. Jeffery, Ben T. Jordan, et al.. (2025). IsoBayes: a Bayesian approach for single-isoform proteomics inference. Bioinformatics. 41(8).

Miskolci, Veronika, et al.. (2024). Infection induced inflammation impairs wound healing through IL-1β signaling. iScience. 27(4). 109532–109532. 12 indexed citations

Dewey, Colin N., et al.. (2022). Distinctive populations of CD4+T cells associated with vaccine efficacy. iScience. 25(9). 104934–104934. 3 indexed citations

Chhabra, Gagan, Mary A. Ndiaye, Chandra K. Singh, et al.. (2020). PLK1 and NOTCH Positively Correlate in Melanoma and Their Combined Inhibition Results in Synergistic Modulations of Key Melanoma Pathways. Molecular Cancer Therapeutics. 20(1). 161–172. 22 indexed citations

Jing, Peicheng, et al.. (2020). Giant Island Mice Exhibit Widespread Gene Expression Changes in Key Metabolic Organs. Genome Biology and Evolution. 12(8). 1277–1301. 2 indexed citations

Liu, Peng, Alexandra A. Soukup, Emery H. Bresnick, Colin N. Dewey, & Sündüz Keleş. (2020). PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments. Genome Research. 30(11). 1655–1666. 1 indexed citations

Rosowski, Emily E., et al.. (2020). Cell type specific gene expression profiling reveals a role for complement component C3 in neutrophil responses to tissue damage. Scientific Reports. 10(1). 15716–15716. 18 indexed citations

Sanchez‐Vazquez, Patricia, et al.. (2019). Genome-wide effects on Escherichia coli transcription from ppGpp binding to its two sites on RNA polymerase. Proceedings of the National Academy of Sciences. 116(17). 8310–8319. 163 indexed citations

Bernstein, Matthew N., AnHai Doan, & Colin N. Dewey. (2017). MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive. Bioinformatics. 33(18). 2914–2923. 47 indexed citations

10.

Hewitt, Kyle J., Koichi R. Katsumura, Daniel R. Matson, et al.. (2017). GATA Factor-Regulated Samd14 Enhancer Confers Red Blood Cell Regeneration and Survival in Severe Anemia. Developmental Cell. 42(3). 213–225.e4. 30 indexed citations

11.

Moskvin, Oleg V., et al.. (2017). Zebrafish zic2 controls formation of periocular neural crest and choroid fissure morphogenesis. Developmental Biology. 429(1). 92–104. 18 indexed citations

12.

Liu, Peng, Rajendran Sanalkumar, Emery H. Bresnick, Sündüz Keleş, & Colin N. Dewey. (2016). Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq. Genome Research. 26(8). 1124–1133. 17 indexed citations

13.

Jiang, Peng, Ning Leng, Michael Collins, et al.. (2016). Analysis of embryonic development in the unsequenced axolotl: Waves of transcriptomic upheaval and stability. Developmental Biology. 426(2). 143–154. 22 indexed citations

14.

Hewitt, Kyle J., Rajendran Sanalkumar, Kirby D. Johnson, et al.. (2015). Hematopoietic Signaling Mechanism Revealed from a Stem/Progenitor Cell Cistrome. Molecular Cell. 59(1). 62–74. 36 indexed citations

15.

Li, Bo, Nathanael R. Fillmore, Yongsheng Bai, et al.. (2014). Evaluation of de novo transcriptome assemblies from RNA-Seq data. Genome biology. 15(12). 553–553. 185 indexed citations

16.

Li, Bo & Colin N. Dewey. (2011). RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics. 12(1). 323–323. 14812 indexed citations breakdown →

17.

Begun, David J, Alisha K. Holloway, Kristian Stevens, et al.. (2007). Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans. PLoS Biology. 5(11). e310–e310. 514 indexed citations breakdown →

18.

Dewey, Colin N. & Lior Pachter. (2006). Evolution at the nucleotide level: the problem of multiple whole-genome alignment. Human Molecular Genetics. 15(suppl_1). R51–R56. 38 indexed citations

19.

Dewey, Colin N., Peter Huggins, Kevin M. Woods, Bernd Sturmfels, & Lior Pachter. (2006). Parametric Alignment of Drosophila Genomes. PLoS Computational Biology. 2(6). e73–e73. 28 indexed citations

20.

Pachter, Lior, Lior Pachter, Lior Pachter, et al.. (2005). Algebraic Statistics for Computational Biology. Cambridge University Press eBooks. 245 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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