Timo Sachsenberg

13.1k total citations
45 papers, 1.8k citations indexed

About

Timo Sachsenberg is a scholar working on Molecular Biology, Spectroscopy and Information Systems and Management. According to data from OpenAlex, Timo Sachsenberg has authored 45 papers receiving a total of 1.8k indexed citations (citations by other indexed papers that have themselves been cited), including 39 papers in Molecular Biology, 26 papers in Spectroscopy and 6 papers in Information Systems and Management. Recurrent topics in Timo Sachsenberg's work include Advanced Proteomics Techniques and Applications (25 papers), Mass Spectrometry Techniques and Applications (14 papers) and Metabolomics and Mass Spectrometry Studies (12 papers). Timo Sachsenberg is often cited by papers focused on Advanced Proteomics Techniques and Applications (25 papers), Mass Spectrometry Techniques and Applications (14 papers) and Metabolomics and Mass Spectrometry Studies (12 papers). Timo Sachsenberg collaborates with scholars based in Germany, United Kingdom and United States. Timo Sachsenberg's co-authors include Detlef Weigel, Georg Zeller, Gunnar Rätsch, Sascha Laubinger, Oliver Kohlbacher, Stefan R. Henz, Yasset Pérez‐Riverol, Wolfgang Busch, Jan U. Lohmann and Christian Widmer and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nature Communications and Bioinformatics.

In The Last Decade

Timo Sachsenberg

42 papers receiving 1.8k citations

Peers

Countries citing papers authored by Timo Sachsenberg

Since Specialization

Citations

This map shows the geographic impact of Timo Sachsenberg's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Timo Sachsenberg with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Timo Sachsenberg more than expected).

Fields of papers citing papers by Timo Sachsenberg

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Timo Sachsenberg. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Timo Sachsenberg. The network helps show where Timo Sachsenberg may publish in the future.

Co-authorship network of co-authors of Timo Sachsenberg

This figure shows the co-authorship network connecting the top 25 collaborators of Timo Sachsenberg. A scholar is included among the top collaborators of Timo Sachsenberg based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Timo Sachsenberg. Timo Sachsenberg is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Open-Source and FAIR Research Software for Proteomics 2025 ·Journal of Proteome Research ·Yasset Pérez‐Riverol, Wout Bittremieux, William Stafford Noble, Lennart Martens, Aivett Bilbao Pena, Michael R. Lazear, Björn Grüning, Daniel S. Katz, Michael J. MacCoss, (unknown), Jimmy K. Eng, Robbin Bouwmeester, Michael R. Shortreed, Enrique Audain, Timo Sachsenberg, (unknown), Georg Wallmann, Bo Wen, Lukas Käll, William E. Fondrie	6
2	Ibaqpy: A scalable Python package for baseline quantification in proteomics leveraging SDRF metadata 2025 ·Journal of Proteomics ·Ping Zheng, Enrique Audain, Henry Webel, (unknown), Joshua Klein, Marc‐Phillip Hitz, Timo Sachsenberg, Mingze Bai, Yasset Pérez‐Riverol	2
3	MHCquant2 refines immunopeptidomics tumor antigen discovery 2025 ·Genome biology ·(unknown), (unknown), (unknown), (unknown), Timo Sachsenberg, (unknown), Ralf Gabriels, Jens Bauer, Marcel Wacker, Leon Bichmann, Lennart Martens, Marissa L. Dubbelaar, Sven Nahnsen, Juliane S. Walz	0
4	OpenMS WebApps: Building User-Friendly Solutions for MS Analysis 2025 ·Journal of Proteome Research ·(unknown), (unknown), Axel Walter, (unknown), (unknown), (unknown), (unknown), (unknown), Kyowon Jeong, (unknown), (unknown), Hannes Röst, Timo Sachsenberg	2
5	Perspectives in computational mass spectrometry: recent developments and key challenges 2024 ·Bioinformatics Advances ·Timo Sachsenberg, Lindsay K. Pino, Marie A. Brunet, Isabell Bludau, Oliver Kohlbacher, Juan Antonio Vizcaíno, Wout Bittremieux	0
6	Intensity and retention time prediction improves the rescoring of protein‐nucleic acid cross‐links 2024 ·PROTEOMICS ·(unknown), Robbin Bouwmeester, (unknown), Luisa M. Welp, Aleksandar Chernev, (unknown), Henning Urlaub, Lennart Martens, Sven Degroeve, Oliver Kohlbacher, Timo Sachsenberg	2
7	quantms: a cloud-based pipeline for quantitative proteomics enables the reanalysis of public proteomics data 2024 ·Nature Methods ·(unknown), Julianus Pfeuffer, Hong Wang, Ping Zheng, Lukas Käll, Timo Sachsenberg, Vadim Demichev, Mingze Bai, Oliver Kohlbacher, Yasset Pérez‐Riverol	26
8	LFQ-Based Peptide and Protein Intensity Differential Expression Analysis 2023 ·Journal of Proteome Research ·Mingze Bai, (unknown), (unknown), Julianus Pfeuffer, Timo Sachsenberg, Yasset Pérez‐Riverol	13
9	Tissue‐based absolute quantification using large‐scale TMT and LFQ experiments 2023 ·PROTEOMICS ·Hong Wang, (unknown), Julianus Pfeuffer, Timo Sachsenberg, Aniel Sánchez, Mingze Bai, Yasset Pérez‐Riverol	4
10	Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes 2023 ·Microbiome ·Manuel Kleiner, (unknown), (unknown), (unknown), Yihua Liu, (unknown), Nikola Tolić, Timo Sachsenberg, (unknown), Mary Lipton, Marc Strous	18
11	UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis 2023 ·Journal of Cheminformatics ·(unknown), Axel Walter, Oliver Alka, Julianus Pfeuffer, Timo Sachsenberg, Omkar S. Mohite, (unknown), Oliver Kohlbacher, Tilmann Weber	16
12	Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides 2021 ·Bioinformatics ·Husen M. Umer, Enrique Audain, Yafeng Zhu, Julianus Pfeuffer, Timo Sachsenberg, Janne Lehtiö, Rui M. Branca, Yasset Pérez‐Riverol	15
13	A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry 2020 ·Nature Communications ·(unknown), Byron Andrews, Timo Sachsenberg, Helena Santos-Rosa, Oliver Kohlbacher, Tony Kouzarides, Benjamin A. Garcia, Hendrik Weisser	65
14	Analysis of protein-DNA interactions in chromatin by UV induced cross-linking and mass spectrometry 2020 ·Nature Communications ·Alexandra Stützer, Luisa M. Welp, Monika Raabe, Timo Sachsenberg, (unknown), (unknown), Andy M. Lau, (unknown), Aleksandar Chernev, Katharina Kramer, Argyris Politis, Oliver Kohlbacher, Wolfgang Fischle, Henning Urlaub	35
15	ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion 2019 ·Journal of Proteome Research ·Niels Hulstaert, Jim Shofstahl, Timo Sachsenberg, Mathias Walzer, Harald Barsnes, Lennart Martens, Yasset Pérez‐Riverol	141
16	In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics 2016 ·Journal of Proteomics ·Enrique Audain, Julian Uszkoreit, Timo Sachsenberg, Julianus Pfeuffer, Xiao Liang, Henning Hermjakob, Aniel Sánchez, Martin Eisenacher, Knut Reinert, David L. Tabb, Oliver Kohlbacher, Yasset Pérez‐Riverol	45
17	Workflows for automated downstream data analysis and visualization in large‐scale computational mass spectrometry 2015 ·PROTEOMICS ·Stephan Aiche, Timo Sachsenberg, Erhan Kenar, Mathias Walzer, Bernd Wiswedel, Theresa Kristl, Matthew Boyles, Albert Duschl, Christian G. Huber, Michael R. Berthold, Knut Reinert, Oliver Kohlbacher	23
18	Dithiothreitol (DTT) Acts as a Specific, UV-inducible Cross-linker in Elucidation of Protein–RNA Interactions* 2015 ·Molecular & Cellular Proteomics ·(unknown), (unknown), Romina Hofele, Katharina Kramer, Timo Sachsenberg, Oliver Kohlbacher, Christof Lenz, Henning Urlaub	12
19	Stress‐induced changes in the Arabidopsis thaliana transcriptome analyzed using whole‐genome tiling arrays 2009 ·The Plant Journal ·Georg Zeller, Stefan R. Henz, Christian Widmer, Timo Sachsenberg, Gunnar Rätsch, Detlef Weigel, Sascha Laubinger	219
20	At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana 2008 ·Genome biology ·Sascha Laubinger, Georg Zeller, Stefan R. Henz, Timo Sachsenberg, Christian Widmer, Naïra Naouar, Marnik Vuylsteke, Bernhard Schölkopf, Gunnar Rätsch, Detlef Weigel	82

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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